Wall clock time and date at job start Fri Apr 10 2020 17:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36766 * 125.79911 * 2 1 4 4 C 1.47260 * 126.94403 * 359.97438 * 3 2 1 5 5 O 1.21628 * 120.00172 * 359.71138 * 4 3 2 6 6 N 1.34781 * 120.00124 * 179.70529 * 4 3 2 7 7 C 1.46500 * 119.99697 * 179.97438 * 6 4 3 8 8 C 1.53006 * 109.46719 * 180.02562 * 7 6 4 9 9 H 1.08995 * 110.64028 * 303.31454 * 8 7 6 10 10 C 1.54324 * 110.71890 * 66.45585 * 8 7 6 11 11 N 1.47020 * 107.39983 * 140.47837 * 10 8 7 12 12 C 1.36946 * 125.64749 * 181.10549 * 11 10 8 13 13 H 1.08000 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.38814 * 119.99867 * 180.02562 * 12 11 10 15 15 N 1.31617 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99829 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47087 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47426 * 119.99468 * 16 14 12 19 19 H 1.48497 * 109.47269 * 239.99725 * 16 14 12 20 20 C 1.47743 * 108.53125 * 1.18235 * 11 10 8 21 21 C 1.54909 * 104.83995 * 335.74644 * 20 11 10 22 22 H 1.08989 * 111.04037 * 279.00643 * 21 20 11 23 23 O 1.42904 * 111.00107 * 155.16655 * 21 20 11 24 24 C 1.46687 * 106.11657 * 179.72182 * 3 2 1 25 25 C 1.34493 * 106.33016 * 0.24345 * 24 3 2 26 26 N 1.34658 * 125.80258 * 180.12963 * 2 1 3 27 27 C 1.46499 * 124.85105 * 0.03060 * 26 2 1 28 28 H 1.09001 * 109.47241 * 89.99746 * 1 2 3 29 29 H 1.09003 * 109.47039 * 210.00140 * 1 2 3 30 30 H 1.08994 * 109.47255 * 329.99977 * 1 2 3 31 31 H 0.97000 * 119.99671 * 0.02562 * 6 4 3 32 32 H 1.08996 * 109.47222 * 60.01303 * 7 6 4 33 33 H 1.08997 * 109.47438 * 300.00126 * 7 6 4 34 34 H 1.09002 * 109.88322 * 259.97367 * 10 8 7 35 35 H 1.09000 * 109.88025 * 20.98532 * 10 8 7 36 36 H 0.96998 * 119.99524 * 180.02562 * 15 14 12 37 37 H 1.09003 * 110.29227 * 216.94505 * 20 11 10 38 38 H 1.08996 * 110.53057 * 94.67717 * 20 11 10 39 39 H 0.96704 * 113.99765 * 67.80908 * 23 21 20 40 40 H 1.07997 * 126.84181 * 180.26006 * 24 3 2 41 41 H 1.07999 * 125.57116 * 179.97438 * 25 24 3 42 42 H 1.08998 * 109.46721 * 270.27764 * 27 26 2 43 43 H 1.09000 * 109.47104 * 30.27995 * 27 26 2 44 44 H 1.09002 * 109.47166 * 150.28427 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6839 2.7839 -0.0063 6 7 2.7849 3.5054 0.0056 7 6 2.3502 4.9045 0.0045 8 6 3.5765 5.8195 0.0116 9 1 4.2150 5.5995 0.8671 10 6 4.3657 5.6849 -1.3078 11 7 4.8209 7.0305 -1.6869 12 6 5.5383 7.3432 -2.8108 13 1 5.8165 6.5662 -3.5074 14 6 5.9087 8.6587 -3.0540 15 7 5.5701 9.6055 -2.2048 16 14 6.8879 9.0851 -4.5866 17 1 7.1401 7.8504 -5.3723 18 1 6.1186 10.0497 -5.4131 19 1 8.1837 9.6939 -4.1927 20 6 4.3760 7.9858 -0.6515 21 6 3.1486 7.3109 0.0100 22 1 2.2504 7.4590 -0.5893 23 8 2.9568 7.7901 1.3425 24 6 3.6882 0.6152 0.0068 25 6 3.6095 -0.7274 0.0049 26 7 2.2947 -1.0921 -0.0025 27 6 1.8094 -2.4744 -0.0062 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 3.7310 3.2914 0.0099 32 1 1.7469 5.0982 0.8913 33 1 1.7567 5.0999 -0.8886 34 1 5.2250 5.0306 -1.1606 35 1 3.7198 5.2790 -2.0863 36 1 5.8287 10.5247 -2.3750 37 1 4.0877 8.9322 -1.1091 38 1 5.1636 8.1458 0.0848 39 1 2.6886 8.7178 1.3921 40 1 4.5890 1.2109 0.0126 41 1 4.4497 -1.4059 0.0082 42 1 1.6839 -2.8181 1.0205 43 1 0.8519 -2.5219 -0.5250 44 1 2.5314 -3.1116 -0.5170 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958390804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:19 Heat of formation + Delta-G solvation = -12.089047 kcal Electronic energy + Delta-G solvation = -25131.619992 eV Core-core repulsion = 21471.550370 eV Total energy + Delta-G solvation = -3660.069622 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.47377 -39.12813 -37.97443 -35.07687 -34.48218 -33.06996 -32.10216 -31.69222 -29.71648 -27.69117 -26.83353 -26.45115 -25.29690 -23.49173 -22.02074 -20.55625 -19.92538 -19.81634 -18.91882 -17.52166 -16.96029 -16.69317 -15.86846 -15.69376 -15.49159 -15.05462 -14.76857 -14.28021 -13.98624 -13.76371 -13.39561 -13.24283 -13.09908 -12.94966 -12.82262 -12.70633 -12.65790 -12.31782 -12.20481 -11.88926 -11.65478 -11.45746 -11.20365 -10.90519 -10.77624 -10.55829 -10.00728 -9.91511 -9.72214 -9.54907 -9.10189 -8.86507 -8.68990 -8.64882 -8.24030 -6.87531 -5.69124 -3.10997 1.72842 2.31369 2.59327 3.38718 3.44209 3.46789 3.60020 3.71642 4.39691 4.44476 4.58863 4.74034 4.75140 4.78231 4.97797 5.06476 5.09047 5.27962 5.34652 5.42939 5.48081 5.51524 5.58927 5.73334 5.78475 5.85011 6.02482 6.06647 6.11124 6.20441 6.30388 6.47867 6.60737 6.65502 6.76835 6.89090 6.91977 7.06472 7.38797 7.57649 7.76993 7.85862 8.20215 8.32010 8.56845 9.17136 9.78315 10.42356 11.35412 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.019283 B = 0.002945 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.681011 B = 9504.273238 C =10460.306799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.101 3.899 3 C -0.233 4.233 4 C 0.590 3.410 5 O -0.557 6.557 6 N -0.720 5.720 7 C 0.136 3.864 8 C -0.104 4.104 9 H 0.085 0.915 10 C 0.141 3.859 11 N -0.602 5.602 12 C -0.221 4.221 13 H 0.080 0.920 14 C -0.012 4.012 15 N -0.923 5.923 16 Si 0.916 3.084 17 H -0.280 1.280 18 H -0.290 1.290 19 H -0.290 1.290 20 C 0.128 3.872 21 C 0.081 3.919 22 H 0.061 0.939 23 O -0.569 6.569 24 C -0.164 4.164 25 C -0.021 4.021 26 N -0.448 5.448 27 C 0.069 3.931 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.400 0.600 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.024 0.976 35 H 0.030 0.970 36 H 0.252 0.748 37 H 0.108 0.892 38 H 0.022 0.978 39 H 0.376 0.624 40 H 0.147 0.853 41 H 0.166 0.834 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.324 -21.175 6.400 23.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.015 4.015 3 C -0.243 4.243 4 C 0.378 3.622 5 O -0.438 6.438 6 N -0.370 5.370 7 C 0.013 3.987 8 C -0.123 4.123 9 H 0.103 0.897 10 C 0.015 3.985 11 N -0.329 5.329 12 C -0.349 4.349 13 H 0.098 0.902 14 C -0.207 4.207 15 N -0.572 5.572 16 Si 0.747 3.253 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.217 1.217 20 C 0.003 3.997 21 C 0.021 3.979 22 H 0.079 0.921 23 O -0.374 6.374 24 C -0.189 4.189 25 C -0.147 4.147 26 N -0.125 5.125 27 C -0.073 4.073 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.235 0.765 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.126 0.874 38 H 0.040 0.960 39 H 0.223 0.777 40 H 0.164 0.836 41 H 0.184 0.816 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.981 -21.756 6.424 24.047 hybrid contribution 1.153 0.586 -0.914 1.584 sum -6.829 -21.169 5.509 22.916 Atomic orbital electron populations 1.20551 0.87163 1.03989 1.03313 1.20307 0.93724 0.85161 1.02320 1.20170 0.93227 0.92089 1.18820 1.17314 0.85297 0.84005 0.75537 1.90710 1.16712 1.84532 1.51825 1.45796 1.09832 1.06118 1.75291 1.21367 0.96347 0.78922 1.02110 1.22396 0.96201 0.94123 0.99625 0.89655 1.21362 0.95237 0.89498 0.92390 1.44405 1.63911 1.01132 1.23439 1.19144 1.25739 0.92934 0.97124 0.90218 1.24803 1.01289 0.95718 0.98938 1.69777 1.50935 1.00263 1.36226 0.85970 0.79287 0.78046 0.82033 1.20473 1.21707 1.21739 1.22575 0.91304 0.95697 0.90148 1.23307 0.99058 0.92968 0.82584 0.92127 1.86377 1.91891 1.31376 1.27710 1.22071 0.95922 0.93589 1.07278 1.21674 0.85316 0.96273 1.11406 1.43537 1.06066 1.06028 1.56874 1.22069 1.01685 0.80187 1.03382 0.90581 0.92154 0.87971 0.76534 0.91354 0.91456 0.95802 0.95252 0.93718 0.87420 0.95982 0.77716 0.83552 0.81638 0.90799 0.89707 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 9.26 36.01 0.33 -0.60 16 2 C 0.10 1.20 6.89 -81.88 -0.56 0.63 16 3 C -0.23 -3.21 6.29 -103.35 -0.65 -3.86 16 4 C 0.59 9.50 7.81 -12.59 -0.10 9.40 16 5 O -0.56 -10.38 14.82 5.25 0.08 -10.30 16 6 N -0.72 -10.91 5.40 -61.43 -0.33 -11.24 16 7 C 0.14 2.26 4.99 -4.04 -0.02 2.24 16 8 C -0.10 -1.89 2.75 -88.78 -0.24 -2.14 16 9 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 10 C 0.14 2.93 6.52 -3.06 -0.02 2.91 16 11 N -0.60 -15.40 3.41 -169.81 -0.58 -15.98 16 12 C -0.22 -6.15 10.28 -15.05 -0.15 -6.31 16 13 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 14 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 15 N -0.92 -26.72 10.11 55.49 0.56 -26.16 16 16 Si 0.92 22.01 29.55 -169.99 -5.02 16.98 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 20 C 0.13 3.10 5.65 -2.35 -0.01 3.09 16 21 C 0.08 1.59 3.88 -24.58 -0.10 1.49 16 22 H 0.06 1.17 8.05 -51.94 -0.42 0.75 16 23 O -0.57 -10.11 13.47 -35.23 -0.47 -10.58 16 24 C -0.16 -1.86 10.56 -37.50 -0.40 -2.26 16 25 C -0.02 -0.20 11.34 -16.82 -0.19 -0.39 16 26 N -0.45 -4.13 3.09 -119.88 -0.37 -4.50 16 27 C 0.07 0.33 10.60 59.85 0.63 0.96 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.43 7.59 -51.93 -0.39 0.04 16 30 H 0.10 1.25 6.47 -51.93 -0.34 0.92 16 31 H 0.40 5.35 7.45 -40.82 -0.30 5.05 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.03 0.62 7.76 -51.93 -0.40 0.21 16 36 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.11 2.88 5.89 -51.93 -0.31 2.58 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.38 5.20 9.12 45.56 0.42 5.62 16 40 H 0.15 1.42 7.70 -52.49 -0.40 1.02 16 41 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.08 0.33 7.51 -51.93 -0.39 -0.06 16 44 H 0.09 0.26 8.13 -51.93 -0.42 -0.16 16 LS Contribution 360.22 15.07 5.43 5.43 Total: -1.00 -34.76 360.22 -8.17 -42.93 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.89 Total: 8.67 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -1.57 Total: 4.75 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.72 Total: -57.87 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.40 Total: -20.88 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.76 -8.17 -42.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958390804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.840 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds