Wall clock time and date at job start Fri Apr 10 2020 17:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36766 * 125.79911 * 2 1 4 4 C 1.47260 * 126.94403 * 359.97438 * 3 2 1 5 5 O 1.21628 * 120.00172 * 359.71138 * 4 3 2 6 6 N 1.34781 * 120.00124 * 179.70529 * 4 3 2 7 7 C 1.46500 * 119.99697 * 179.97438 * 6 4 3 8 8 C 1.53006 * 109.46719 * 180.02562 * 7 6 4 9 9 H 1.08995 * 110.64028 * 303.31454 * 8 7 6 10 10 C 1.54324 * 110.71890 * 66.45585 * 8 7 6 11 11 N 1.47020 * 107.39983 * 140.47837 * 10 8 7 12 12 C 1.36946 * 125.64749 * 181.10549 * 11 10 8 13 13 H 1.08000 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.38814 * 119.99867 * 180.02562 * 12 11 10 15 15 N 1.31617 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99829 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47087 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47426 * 119.99468 * 16 14 12 19 19 H 1.48497 * 109.47269 * 239.99725 * 16 14 12 20 20 C 1.47743 * 108.53125 * 1.18235 * 11 10 8 21 21 C 1.54909 * 104.83995 * 335.74644 * 20 11 10 22 22 H 1.08989 * 111.04037 * 279.00643 * 21 20 11 23 23 O 1.42904 * 111.00107 * 155.16655 * 21 20 11 24 24 C 1.46687 * 106.11657 * 179.72182 * 3 2 1 25 25 C 1.34493 * 106.33016 * 0.24345 * 24 3 2 26 26 N 1.34658 * 125.80258 * 180.12963 * 2 1 3 27 27 C 1.46499 * 124.85105 * 0.03060 * 26 2 1 28 28 H 1.09001 * 109.47241 * 89.99746 * 1 2 3 29 29 H 1.09003 * 109.47039 * 210.00140 * 1 2 3 30 30 H 1.08994 * 109.47255 * 329.99977 * 1 2 3 31 31 H 0.97000 * 119.99671 * 0.02562 * 6 4 3 32 32 H 1.08996 * 109.47222 * 60.01303 * 7 6 4 33 33 H 1.08997 * 109.47438 * 300.00126 * 7 6 4 34 34 H 1.09002 * 109.88322 * 259.97367 * 10 8 7 35 35 H 1.09000 * 109.88025 * 20.98532 * 10 8 7 36 36 H 0.96998 * 119.99524 * 180.02562 * 15 14 12 37 37 H 1.09003 * 110.29227 * 216.94505 * 20 11 10 38 38 H 1.08996 * 110.53057 * 94.67717 * 20 11 10 39 39 H 0.96704 * 113.99765 * 67.80908 * 23 21 20 40 40 H 1.07997 * 126.84181 * 180.26006 * 24 3 2 41 41 H 1.07999 * 125.57116 * 179.97438 * 25 24 3 42 42 H 1.08998 * 109.46721 * 270.27764 * 27 26 2 43 43 H 1.09000 * 109.47104 * 30.27995 * 27 26 2 44 44 H 1.09002 * 109.47166 * 150.28427 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6839 2.7839 -0.0063 6 7 2.7849 3.5054 0.0056 7 6 2.3502 4.9045 0.0045 8 6 3.5765 5.8195 0.0116 9 1 4.2150 5.5995 0.8671 10 6 4.3657 5.6849 -1.3078 11 7 4.8209 7.0305 -1.6869 12 6 5.5383 7.3432 -2.8108 13 1 5.8165 6.5662 -3.5074 14 6 5.9087 8.6587 -3.0540 15 7 5.5701 9.6055 -2.2048 16 14 6.8879 9.0851 -4.5866 17 1 7.1401 7.8504 -5.3723 18 1 6.1186 10.0497 -5.4131 19 1 8.1837 9.6939 -4.1927 20 6 4.3760 7.9858 -0.6515 21 6 3.1486 7.3109 0.0100 22 1 2.2504 7.4590 -0.5893 23 8 2.9568 7.7901 1.3425 24 6 3.6882 0.6152 0.0068 25 6 3.6095 -0.7274 0.0049 26 7 2.2947 -1.0921 -0.0025 27 6 1.8094 -2.4744 -0.0062 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 3.7310 3.2914 0.0099 32 1 1.7469 5.0982 0.8913 33 1 1.7567 5.0999 -0.8886 34 1 5.2250 5.0306 -1.1606 35 1 3.7198 5.2790 -2.0863 36 1 5.8287 10.5247 -2.3750 37 1 4.0877 8.9322 -1.1091 38 1 5.1636 8.1458 0.0848 39 1 2.6886 8.7178 1.3921 40 1 4.5890 1.2109 0.0126 41 1 4.4497 -1.4059 0.0082 42 1 1.6839 -2.8181 1.0205 43 1 0.8519 -2.5219 -0.5250 44 1 2.5314 -3.1116 -0.5170 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958390804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:18 Heat of formation + Delta-G solvation = -37.737746 kcal Electronic energy + Delta-G solvation = -25132.732203 eV Core-core repulsion = 21471.550370 eV Total energy + Delta-G solvation = -3661.181833 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.25897 -40.47514 -39.50797 -36.64604 -36.01988 -34.12353 -33.57652 -32.49726 -31.40515 -29.37070 -27.92270 -27.16572 -26.90675 -25.04097 -23.11729 -22.24174 -21.35721 -20.93994 -19.94856 -18.94120 -18.44244 -18.16321 -17.09155 -16.77911 -16.61394 -16.48895 -16.13230 -15.62986 -15.44969 -15.02236 -14.74650 -14.33410 -14.26177 -14.05359 -13.94632 -13.87442 -13.64177 -13.57313 -13.23269 -13.13258 -13.09622 -12.81146 -12.78089 -12.46661 -12.35287 -12.27816 -11.89752 -11.82970 -11.38682 -10.95631 -10.76589 -10.71972 -10.08908 -9.48615 -9.08237 -8.92649 -7.80041 -5.25069 0.76618 1.47742 1.48403 1.53792 1.58966 1.90818 2.42969 2.49031 2.60517 3.21410 3.31103 3.62244 3.74901 3.86515 3.91747 3.99881 4.05426 4.10653 4.24358 4.40287 4.43582 4.46758 4.48763 4.61947 4.68562 4.74987 4.76012 4.77034 4.90378 4.97793 5.00042 5.08819 5.26081 5.30459 5.42382 5.47306 5.51521 5.73284 5.82147 6.12135 6.24031 6.39324 6.69518 6.89313 7.07104 7.36932 7.73012 8.36802 9.22672 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.019283 B = 0.002945 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.681011 B = 9504.273238 C =10460.306799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.094 3.906 3 C -0.273 4.273 4 C 0.584 3.416 5 O -0.592 6.592 6 N -0.715 5.715 7 C 0.150 3.850 8 C -0.087 4.087 9 H 0.091 0.909 10 C 0.141 3.859 11 N -0.624 5.624 12 C -0.238 4.238 13 H 0.084 0.916 14 C -0.067 4.067 15 N -0.950 5.950 16 Si 0.982 3.018 17 H -0.266 1.266 18 H -0.291 1.291 19 H -0.292 1.292 20 C 0.134 3.866 21 C 0.097 3.903 22 H 0.067 0.933 23 O -0.568 6.568 24 C -0.186 4.186 25 C -0.009 4.009 26 N -0.443 5.443 27 C 0.059 3.941 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.409 0.591 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.035 0.965 35 H 0.030 0.970 36 H 0.248 0.752 37 H 0.079 0.921 38 H -0.006 1.006 39 H 0.394 0.606 40 H 0.155 0.845 41 H 0.203 0.797 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.068 -24.049 6.332 25.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.024 4.024 3 C -0.283 4.283 4 C 0.375 3.625 5 O -0.475 6.475 6 N -0.366 5.366 7 C 0.026 3.974 8 C -0.106 4.106 9 H 0.109 0.891 10 C 0.016 3.984 11 N -0.351 5.351 12 C -0.367 4.367 13 H 0.102 0.898 14 C -0.260 4.260 15 N -0.599 5.599 16 Si 0.811 3.189 17 H -0.190 1.190 18 H -0.218 1.218 19 H -0.219 1.219 20 C 0.008 3.992 21 C 0.036 3.964 22 H 0.085 0.915 23 O -0.375 6.375 24 C -0.210 4.210 25 C -0.135 4.135 26 N -0.118 5.118 27 C -0.081 4.081 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.245 0.755 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.012 0.988 39 H 0.244 0.756 40 H 0.172 0.828 41 H 0.219 0.781 42 H 0.107 0.893 43 H 0.113 0.887 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.717 -24.674 6.369 26.626 hybrid contribution 1.069 1.396 -0.856 1.955 sum -6.648 -23.278 5.514 24.828 Atomic orbital electron populations 1.20506 0.86450 1.04177 1.03503 1.20524 0.94467 0.85713 1.01740 1.20197 0.95122 0.91177 1.21787 1.17764 0.84846 0.85159 0.74704 1.90680 1.18029 1.85201 1.53562 1.45696 1.10331 1.05359 1.75211 1.21082 0.95195 0.79572 1.01530 1.22222 0.96438 0.93575 0.98384 0.89093 1.21474 0.95779 0.87565 0.93558 1.44690 1.63914 1.03243 1.23254 1.19512 1.25863 0.93301 0.97992 0.89804 1.25655 1.02668 0.95717 1.01930 1.70012 1.51898 1.00241 1.37784 0.84947 0.77439 0.77943 0.78616 1.19027 1.21772 1.21922 1.22358 0.92276 0.95165 0.89367 1.22983 0.97040 0.93226 0.83125 0.91496 1.86350 1.91783 1.33103 1.26291 1.22276 0.95204 0.94851 1.08669 1.22239 0.86241 0.96109 1.08944 1.43850 1.05832 1.07081 1.55061 1.22440 1.02876 0.77873 1.04933 0.90331 0.89061 0.90623 0.75493 0.91465 0.92519 0.94689 0.95196 0.94208 0.90273 0.98818 0.75642 0.82771 0.78069 0.89275 0.88690 0.87313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 9.26 71.24 0.66 -1.05 16 2 C 0.09 2.10 6.89 41.78 0.29 2.39 16 3 C -0.27 -7.38 6.29 -19.04 -0.12 -7.50 16 4 C 0.58 19.04 7.81 86.61 0.68 19.71 16 5 O -0.59 -22.60 14.82 -4.12 -0.06 -22.66 16 6 N -0.72 -21.55 5.40 -466.52 -2.52 -24.06 16 7 C 0.15 4.96 4.99 86.38 0.43 5.39 16 8 C -0.09 -3.11 2.75 -9.60 -0.03 -3.14 16 9 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 10 C 0.14 5.84 6.52 86.73 0.57 6.40 16 11 N -0.62 -32.35 3.41 -691.17 -2.35 -34.70 16 12 C -0.24 -13.35 10.28 84.03 0.86 -12.49 16 13 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 14 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16 15 N -0.95 -56.32 10.11 21.65 0.22 -56.10 16 16 Si 0.98 45.56 29.55 68.60 2.03 47.58 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 19 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 20 C 0.13 6.65 5.65 86.79 0.49 7.14 16 21 C 0.10 3.78 3.88 31.99 0.12 3.90 16 22 H 0.07 2.55 8.05 -2.39 -0.02 2.53 16 23 O -0.57 -19.72 13.47 -148.98 -2.01 -21.72 16 24 C -0.19 -3.95 10.56 23.62 0.25 -3.70 16 25 C -0.01 -0.14 11.34 83.12 0.94 0.80 16 26 N -0.44 -6.89 3.09 -533.20 -1.65 -8.54 16 27 C 0.06 0.34 10.60 127.77 1.35 1.69 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 1.11 7.59 -2.39 -0.02 1.09 16 30 H 0.07 1.89 6.47 -2.39 -0.02 1.88 16 31 H 0.41 10.73 7.45 -92.71 -0.69 10.04 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.06 2.00 8.06 -2.39 -0.02 1.98 16 34 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.03 1.24 7.76 -2.39 -0.02 1.23 16 36 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 37 H 0.08 4.40 5.89 -2.39 -0.01 4.38 16 38 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 39 H 0.39 10.56 9.12 -74.05 -0.68 9.89 16 40 H 0.15 2.81 7.70 -2.91 -0.02 2.79 16 41 H 0.20 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.09 0.38 7.51 -2.39 -0.02 0.37 16 44 H 0.11 0.17 8.13 -2.39 -0.02 0.15 16 Total: -1.00 -76.80 360.22 0.28 -76.52 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: -0.34 Total: 27.47 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 6.96 Total: 16.21 kcal Atomic # 7 Polarization: -117.10 SS G_CDS: -6.30 Total: -123.40 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -2.07 Total: -44.39 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -76.80 0.28 -76.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958390804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.781 kcal (2) G-P(sol) polarization free energy of solvation -76.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds