Wall clock time and date at job start Fri Apr 10 2020 17:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36769 * 125.80103 * 2 1 4 4 C 1.47270 * 126.94279 * 359.94851 * 3 2 1 5 5 O 1.21629 * 119.99713 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00367 * 179.97438 * 4 3 2 7 7 C 1.46497 * 120.00288 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47260 * 180.02562 * 7 6 4 9 9 H 1.09005 * 110.63876 * 303.31300 * 8 7 6 10 10 C 1.54319 * 110.72026 * 66.45976 * 8 7 6 11 11 N 1.47019 * 107.27411 * 140.73488 * 10 8 7 12 12 C 1.36933 * 125.65365 * 181.02085 * 11 10 8 13 13 H 1.08005 * 119.99346 * 13.62994 * 12 11 10 14 14 C 1.38803 * 120.00505 * 193.62301 * 12 11 10 15 15 N 1.31626 * 119.99731 * 27.27804 * 14 12 11 16 16 Si 1.86804 * 120.00452 * 207.27269 * 14 12 11 17 17 H 1.48494 * 109.46849 * 90.00056 * 16 14 12 18 18 H 1.48503 * 109.46862 * 330.00133 * 16 14 12 19 19 H 1.48496 * 109.47029 * 210.00372 * 16 14 12 20 20 C 1.47429 * 108.70035 * 1.28221 * 11 10 8 21 21 C 1.55122 * 104.72375 * 335.55720 * 20 11 10 22 22 H 1.09003 * 110.91017 * 155.27351 * 21 20 11 23 23 O 1.42903 * 111.22668 * 279.17415 * 21 20 11 24 24 C 1.46685 * 106.11836 * 180.20769 * 3 2 1 25 25 C 1.34481 * 106.33278 * 359.62656 * 24 3 2 26 26 N 1.34653 * 125.80375 * 179.97438 * 2 1 3 27 27 C 1.46497 * 124.85327 * 0.02562 * 26 2 1 28 28 H 1.08995 * 109.47329 * 89.99963 * 1 2 3 29 29 H 1.09002 * 109.46822 * 209.99989 * 1 2 3 30 30 H 1.08999 * 109.46982 * 329.99634 * 1 2 3 31 31 H 0.97003 * 119.99585 * 0.02562 * 6 4 3 32 32 H 1.09003 * 109.46590 * 60.00215 * 7 6 4 33 33 H 1.08997 * 109.47229 * 300.00877 * 7 6 4 34 34 H 1.09000 * 109.88113 * 21.31392 * 10 8 7 35 35 H 1.09006 * 110.00857 * 260.22355 * 10 8 7 36 36 H 0.96994 * 119.99479 * 5.84381 * 15 14 12 37 37 H 1.09001 * 110.36546 * 94.48417 * 20 11 10 38 38 H 1.08995 * 110.36676 * 216.80510 * 20 11 10 39 39 H 0.96702 * 114.00038 * 292.20559 * 23 21 20 40 40 H 1.08006 * 126.83345 * 179.75277 * 24 3 2 41 41 H 1.07996 * 125.57607 * 180.16132 * 25 24 3 42 42 H 1.08990 * 109.47596 * 89.99493 * 27 26 2 43 43 H 1.09006 * 109.47135 * 210.00250 * 27 26 2 44 44 H 1.09005 * 109.46943 * 329.99285 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8702 2.5157 -0.0011 5 8 0.6838 2.7839 -0.0025 6 7 2.7848 3.5055 -0.0004 7 6 2.3502 4.9045 -0.0020 8 6 3.5765 5.8195 -0.0015 9 1 4.2186 5.6010 0.8519 10 6 4.3602 5.6829 -1.3238 11 7 4.8177 7.0282 -1.7011 12 6 5.5334 7.3417 -2.8256 13 1 5.6203 6.6238 -3.6279 14 6 6.1469 8.5820 -2.9346 15 7 6.5168 9.2307 -1.8507 16 14 6.4478 9.3305 -4.6195 17 1 5.2755 10.1529 -5.0122 18 1 6.6475 8.2462 -5.6143 19 1 7.6598 10.1873 -4.5712 20 6 4.3838 7.9830 -0.6649 21 6 3.1525 7.3121 -0.0014 22 1 3.0110 7.6780 1.0156 23 8 1.9723 7.5093 -0.7826 24 6 3.6882 0.6152 -0.0051 25 6 3.6096 -0.7273 0.0007 26 7 2.2947 -1.0921 0.0005 27 6 1.8095 -2.4743 0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 3.7310 3.2915 0.0004 32 1 1.7505 5.0996 0.8870 33 1 1.7530 5.0984 -0.8929 34 1 3.7096 5.2812 -2.1005 35 1 5.2183 5.0256 -1.1826 36 1 6.4387 8.8071 -0.9817 37 1 5.1768 8.1343 0.0675 38 1 4.0994 8.9322 -1.1189 39 1 1.6690 8.4270 -0.8121 40 1 4.5890 1.2111 -0.0102 41 1 4.4498 -1.4058 0.0016 42 1 1.6894 -2.8174 -1.0270 43 1 2.5287 -3.1119 0.5148 44 1 0.8492 -2.5223 0.5142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958390806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:25 Heat of formation + Delta-G solvation = -12.516731 kcal Electronic energy + Delta-G solvation = -25298.688261 eV Core-core repulsion = 21638.600093 eV Total energy + Delta-G solvation = -3660.088168 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.48586 -39.20319 -38.19309 -34.92458 -34.60549 -33.09011 -32.14152 -31.70508 -29.62695 -28.02496 -26.91838 -26.47177 -25.04728 -23.58932 -22.04896 -20.55095 -19.95916 -19.81566 -18.92191 -17.68974 -17.49227 -16.78661 -15.89634 -15.71908 -15.46594 -14.88042 -14.46949 -14.30095 -14.24926 -13.69100 -13.54677 -13.34500 -13.21948 -13.15382 -12.99174 -12.78833 -12.67809 -12.39804 -12.24157 -12.09234 -11.66011 -11.47549 -10.91861 -10.72040 -10.58513 -10.46676 -10.27071 -10.01053 -9.64545 -9.58375 -9.24996 -8.87001 -8.65915 -8.39354 -8.24811 -6.90748 -6.06909 -3.08543 1.72272 2.30254 2.58205 3.54144 3.56569 3.58994 3.71297 3.72786 4.38523 4.56701 4.58205 4.66136 4.70938 4.75194 4.94145 5.06486 5.08929 5.19995 5.26376 5.32983 5.36902 5.41415 5.50854 5.61062 5.76808 5.80504 5.84029 5.95108 6.00789 6.10848 6.32456 6.36565 6.58973 6.64025 6.73929 6.80180 6.88727 6.90515 6.96030 7.05380 7.78926 7.84727 8.14671 8.50725 8.56513 9.04997 9.84463 10.38764 11.26472 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.002934 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.034292 B = 9541.564678 C =10241.196749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.101 3.899 3 C -0.234 4.234 4 C 0.590 3.410 5 O -0.556 6.556 6 N -0.723 5.723 7 C 0.143 3.857 8 C -0.106 4.106 9 H 0.087 0.913 10 C 0.146 3.854 11 N -0.598 5.598 12 C -0.329 4.329 13 H 0.066 0.934 14 C -0.029 4.029 15 N -0.924 5.924 16 Si 1.067 2.933 17 H -0.294 1.294 18 H -0.293 1.293 19 H -0.291 1.291 20 C 0.118 3.882 21 C 0.092 3.908 22 H 0.060 0.940 23 O -0.553 6.553 24 C -0.165 4.165 25 C -0.021 4.021 26 N -0.448 5.448 27 C 0.068 3.932 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.399 0.601 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.031 0.969 35 H 0.020 0.980 36 H 0.267 0.733 37 H 0.032 0.968 38 H 0.057 0.943 39 H 0.374 0.626 40 H 0.146 0.854 41 H 0.166 0.834 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.970 -20.727 7.632 23.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.015 4.015 3 C -0.244 4.244 4 C 0.378 3.622 5 O -0.436 6.436 6 N -0.373 5.373 7 C 0.020 3.980 8 C -0.125 4.125 9 H 0.105 0.895 10 C 0.020 3.980 11 N -0.325 5.325 12 C -0.456 4.456 13 H 0.084 0.916 14 C -0.229 4.229 15 N -0.566 5.566 16 Si 0.897 3.103 17 H -0.221 1.221 18 H -0.219 1.219 19 H -0.217 1.217 20 C -0.008 4.008 21 C 0.031 3.969 22 H 0.077 0.923 23 O -0.358 6.358 24 C -0.189 4.189 25 C -0.147 4.147 26 N -0.125 5.125 27 C -0.074 4.074 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.233 0.767 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.221 0.779 40 H 0.164 0.836 41 H 0.184 0.816 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.210 -20.159 6.641 23.137 hybrid contribution 0.242 -0.995 0.834 1.320 sum -8.968 -21.153 7.475 24.161 Atomic orbital electron populations 1.20559 0.87158 1.03916 1.03368 1.20304 0.93732 0.85166 1.02308 1.20180 0.93209 0.92111 1.18870 1.17305 0.85305 0.83979 0.75575 1.90714 1.16685 1.84519 1.51726 1.45843 1.09761 1.06322 1.75389 1.21137 0.95921 0.78218 1.02718 1.22501 0.96335 0.93865 0.99848 0.89517 1.21313 0.94998 0.89081 0.92560 1.44410 1.63314 1.00744 1.24034 1.19814 1.29147 1.03474 0.93192 0.91588 1.25695 0.96731 0.95595 1.04900 1.70776 1.44087 1.42396 0.99390 0.83476 0.76318 0.75762 0.74716 1.22128 1.21926 1.21702 1.22265 0.92502 0.94295 0.91730 1.23017 0.86207 0.94755 0.92881 0.92253 1.86450 1.43240 1.32049 1.74064 1.22065 0.95913 0.93605 1.07302 1.21672 0.85309 0.96261 1.11422 1.43536 1.06064 1.06042 1.56831 1.22078 1.01643 0.80153 1.03490 0.90525 0.92160 0.88002 0.76687 0.91926 0.90259 0.95089 0.96172 0.92084 0.95050 0.92459 0.77886 0.83597 0.81628 0.90706 0.89648 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 9.52 36.00 0.34 -0.60 16 2 C 0.10 1.21 6.89 -81.89 -0.56 0.64 16 3 C -0.23 -3.25 6.29 -103.35 -0.65 -3.90 16 4 C 0.59 9.60 7.81 -12.59 -0.10 9.50 16 5 O -0.56 -10.49 14.81 5.25 0.08 -10.41 16 6 N -0.72 -11.01 5.40 -61.43 -0.33 -11.34 16 7 C 0.14 2.39 4.60 -4.04 -0.02 2.38 16 8 C -0.11 -1.85 2.93 -88.79 -0.26 -2.11 16 9 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 10 C 0.15 3.14 6.52 -3.07 -0.02 3.12 16 11 N -0.60 -15.46 3.33 -169.94 -0.57 -16.03 16 12 C -0.33 -9.50 10.05 -15.06 -0.15 -9.66 16 13 H 0.07 1.92 7.96 -52.48 -0.42 1.51 16 14 C -0.03 -0.83 5.09 -17.43 -0.09 -0.92 16 15 N -0.92 -28.04 12.82 55.49 0.71 -27.33 16 16 Si 1.07 25.96 30.00 -169.99 -5.10 20.86 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 C 0.12 2.72 4.97 -2.41 -0.01 2.71 16 21 C 0.09 1.67 4.17 -24.47 -0.10 1.57 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 23 O -0.55 -10.03 12.25 -35.23 -0.43 -10.46 16 24 C -0.16 -1.89 10.56 -37.50 -0.40 -2.29 16 25 C -0.02 -0.20 11.34 -16.82 -0.19 -0.39 16 26 N -0.45 -4.16 3.09 -119.89 -0.37 -4.53 16 27 C 0.07 0.33 10.82 59.85 0.65 0.98 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.43 6.92 -51.93 -0.36 0.07 16 30 H 0.10 1.25 6.47 -51.93 -0.34 0.92 16 31 H 0.40 5.36 7.45 -40.82 -0.30 5.06 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.54 7.45 -51.93 -0.39 1.15 16 34 H 0.03 0.71 7.77 -51.93 -0.40 0.30 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.27 8.05 5.83 -40.82 -0.24 7.82 16 37 H 0.03 0.76 6.84 -51.93 -0.36 0.40 16 38 H 0.06 1.44 7.73 -51.93 -0.40 1.04 16 39 H 0.37 5.34 9.12 45.56 0.42 5.76 16 40 H 0.15 1.45 7.70 -52.48 -0.40 1.04 16 41 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.26 8.13 -51.93 -0.42 -0.17 16 44 H 0.08 0.32 6.88 -51.93 -0.36 -0.04 16 LS Contribution 357.71 15.07 5.39 5.39 Total: -1.00 -36.87 357.71 -7.90 -44.77 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -5.72 Total: 8.04 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -1.56 Total: 1.04 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.56 Total: -59.23 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.35 Total: -20.87 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.10 Total: 20.86 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.87 -7.90 -44.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958390806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.257 kcal (2) G-P(sol) polarization free energy of solvation -36.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds