Wall clock time and date at job start Fri Apr 10 2020 17:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36769 * 125.80103 * 2 1 4 4 C 1.47270 * 126.94279 * 359.94851 * 3 2 1 5 5 O 1.21629 * 119.99713 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00367 * 179.97438 * 4 3 2 7 7 C 1.46497 * 120.00288 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47260 * 180.02562 * 7 6 4 9 9 H 1.09005 * 110.63876 * 303.31300 * 8 7 6 10 10 C 1.54319 * 110.72026 * 66.45976 * 8 7 6 11 11 N 1.47019 * 107.27411 * 140.73488 * 10 8 7 12 12 C 1.36933 * 125.65365 * 181.02085 * 11 10 8 13 13 H 1.08005 * 119.99346 * 13.62994 * 12 11 10 14 14 C 1.38803 * 120.00505 * 193.62301 * 12 11 10 15 15 N 1.31626 * 119.99731 * 27.27804 * 14 12 11 16 16 Si 1.86804 * 120.00452 * 207.27269 * 14 12 11 17 17 H 1.48494 * 109.46849 * 90.00056 * 16 14 12 18 18 H 1.48503 * 109.46862 * 330.00133 * 16 14 12 19 19 H 1.48496 * 109.47029 * 210.00372 * 16 14 12 20 20 C 1.47429 * 108.70035 * 1.28221 * 11 10 8 21 21 C 1.55122 * 104.72375 * 335.55720 * 20 11 10 22 22 H 1.09003 * 110.91017 * 155.27351 * 21 20 11 23 23 O 1.42903 * 111.22668 * 279.17415 * 21 20 11 24 24 C 1.46685 * 106.11836 * 180.20769 * 3 2 1 25 25 C 1.34481 * 106.33278 * 359.62656 * 24 3 2 26 26 N 1.34653 * 125.80375 * 179.97438 * 2 1 3 27 27 C 1.46497 * 124.85327 * 0.02562 * 26 2 1 28 28 H 1.08995 * 109.47329 * 89.99963 * 1 2 3 29 29 H 1.09002 * 109.46822 * 209.99989 * 1 2 3 30 30 H 1.08999 * 109.46982 * 329.99634 * 1 2 3 31 31 H 0.97003 * 119.99585 * 0.02562 * 6 4 3 32 32 H 1.09003 * 109.46590 * 60.00215 * 7 6 4 33 33 H 1.08997 * 109.47229 * 300.00877 * 7 6 4 34 34 H 1.09000 * 109.88113 * 21.31392 * 10 8 7 35 35 H 1.09006 * 110.00857 * 260.22355 * 10 8 7 36 36 H 0.96994 * 119.99479 * 5.84381 * 15 14 12 37 37 H 1.09001 * 110.36546 * 94.48417 * 20 11 10 38 38 H 1.08995 * 110.36676 * 216.80510 * 20 11 10 39 39 H 0.96702 * 114.00038 * 292.20559 * 23 21 20 40 40 H 1.08006 * 126.83345 * 179.75277 * 24 3 2 41 41 H 1.07996 * 125.57607 * 180.16132 * 25 24 3 42 42 H 1.08990 * 109.47596 * 89.99493 * 27 26 2 43 43 H 1.09006 * 109.47135 * 210.00250 * 27 26 2 44 44 H 1.09005 * 109.46943 * 329.99285 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8702 2.5157 -0.0011 5 8 0.6838 2.7839 -0.0025 6 7 2.7848 3.5055 -0.0004 7 6 2.3502 4.9045 -0.0020 8 6 3.5765 5.8195 -0.0015 9 1 4.2186 5.6010 0.8519 10 6 4.3602 5.6829 -1.3238 11 7 4.8177 7.0282 -1.7011 12 6 5.5334 7.3417 -2.8256 13 1 5.6203 6.6238 -3.6279 14 6 6.1469 8.5820 -2.9346 15 7 6.5168 9.2307 -1.8507 16 14 6.4478 9.3305 -4.6195 17 1 5.2755 10.1529 -5.0122 18 1 6.6475 8.2462 -5.6143 19 1 7.6598 10.1873 -4.5712 20 6 4.3838 7.9830 -0.6649 21 6 3.1525 7.3121 -0.0014 22 1 3.0110 7.6780 1.0156 23 8 1.9723 7.5093 -0.7826 24 6 3.6882 0.6152 -0.0051 25 6 3.6096 -0.7273 0.0007 26 7 2.2947 -1.0921 0.0005 27 6 1.8095 -2.4743 0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 3.7310 3.2915 0.0004 32 1 1.7505 5.0996 0.8870 33 1 1.7530 5.0984 -0.8929 34 1 3.7096 5.2812 -2.1005 35 1 5.2183 5.0256 -1.1826 36 1 6.4387 8.8071 -0.9817 37 1 5.1768 8.1343 0.0675 38 1 4.0994 8.9322 -1.1189 39 1 1.6690 8.4270 -0.8121 40 1 4.5890 1.2111 -0.0102 41 1 4.4498 -1.4058 0.0016 42 1 1.6894 -2.8174 -1.0270 43 1 2.5287 -3.1119 0.5148 44 1 0.8492 -2.5223 0.5142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958390806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:24 Heat of formation + Delta-G solvation = -40.314707 kcal Electronic energy + Delta-G solvation = -25299.893672 eV Core-core repulsion = 21638.600093 eV Total energy + Delta-G solvation = -3661.293578 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.28567 -40.59400 -39.66357 -36.56313 -36.11854 -34.16589 -33.60146 -32.52420 -31.32181 -29.72605 -27.91863 -27.19793 -26.73509 -25.18108 -23.14611 -22.22780 -21.34385 -20.96916 -19.96146 -19.66624 -18.50156 -18.22244 -16.85347 -16.66844 -16.63740 -16.30736 -16.16260 -15.78343 -15.59474 -15.19350 -15.12841 -14.71941 -14.30277 -14.04087 -13.99963 -13.90904 -13.77657 -13.60913 -13.18126 -13.12903 -12.86531 -12.73157 -12.55367 -12.46866 -12.36300 -12.18688 -11.90615 -11.78170 -11.62644 -10.91380 -10.84248 -10.55130 -10.09974 -9.51298 -9.10843 -9.02106 -8.33897 -5.32260 0.74416 1.51038 1.56251 1.63646 1.81790 1.88741 2.42895 2.58352 2.61999 3.14625 3.22733 3.44124 3.75594 3.78205 3.84091 3.87874 3.97158 4.02899 4.18881 4.30636 4.36715 4.42210 4.46460 4.54872 4.65165 4.69951 4.72272 4.75125 4.85171 4.88487 4.97418 5.01861 5.07694 5.09644 5.23482 5.28427 5.50884 5.62156 5.79312 6.09681 6.30331 6.36843 6.66707 6.84141 6.92136 7.35162 7.68853 8.26121 8.99241 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.002934 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.034292 B = 9541.564678 C =10241.196749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.094 3.906 3 C -0.274 4.274 4 C 0.583 3.417 5 O -0.592 6.592 6 N -0.718 5.718 7 C 0.159 3.841 8 C -0.091 4.091 9 H 0.114 0.886 10 C 0.146 3.854 11 N -0.622 5.622 12 C -0.344 4.344 13 H 0.055 0.945 14 C -0.077 4.077 15 N -0.947 5.947 16 Si 1.117 2.883 17 H -0.286 1.286 18 H -0.275 1.275 19 H -0.290 1.290 20 C 0.120 3.880 21 C 0.105 3.895 22 H 0.101 0.899 23 O -0.566 6.566 24 C -0.187 4.187 25 C -0.009 4.009 26 N -0.442 5.442 27 C 0.058 3.942 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.408 0.592 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.013 0.987 35 H 0.025 0.975 36 H 0.258 0.742 37 H 0.021 0.979 38 H 0.027 0.973 39 H 0.391 0.609 40 H 0.153 0.847 41 H 0.203 0.797 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.069 -23.035 8.217 26.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.024 4.024 3 C -0.284 4.284 4 C 0.374 3.626 5 O -0.475 6.475 6 N -0.369 5.369 7 C 0.035 3.965 8 C -0.110 4.110 9 H 0.132 0.868 10 C 0.021 3.979 11 N -0.349 5.349 12 C -0.472 4.472 13 H 0.072 0.928 14 C -0.272 4.272 15 N -0.591 5.591 16 Si 0.941 3.059 17 H -0.213 1.213 18 H -0.201 1.201 19 H -0.216 1.216 20 C -0.006 4.006 21 C 0.045 3.955 22 H 0.119 0.881 23 O -0.373 6.373 24 C -0.211 4.211 25 C -0.135 4.135 26 N -0.118 5.118 27 C -0.082 4.082 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.243 0.757 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.039 0.961 38 H 0.046 0.954 39 H 0.240 0.760 40 H 0.171 0.829 41 H 0.220 0.780 42 H 0.105 0.895 43 H 0.128 0.872 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.310 -22.507 7.240 25.410 hybrid contribution 0.260 -0.395 0.645 0.800 sum -9.050 -22.902 7.885 25.857 Atomic orbital electron populations 1.20516 0.86423 1.04236 1.03460 1.20523 0.94488 0.85712 1.01703 1.20211 0.95103 0.91220 1.21851 1.17770 0.84868 0.85178 0.74738 1.90682 1.18041 1.85214 1.53524 1.45757 1.10228 1.05649 1.75234 1.20839 0.95102 0.78941 1.01638 1.22442 0.96330 0.93791 0.98405 0.86828 1.21376 0.95139 0.87233 0.94193 1.44682 1.63033 1.03089 1.24076 1.20025 1.29329 1.03664 0.94205 0.92751 1.27036 0.96611 0.96131 1.07442 1.70876 1.45943 1.42743 0.99519 0.82820 0.76312 0.75522 0.71212 1.21269 1.20072 1.21618 1.22269 0.94337 0.93131 0.90856 1.22973 0.84086 0.94401 0.94075 0.88135 1.86433 1.42783 1.33735 1.74386 1.22263 0.95180 0.94890 1.08756 1.22235 0.86257 0.96074 1.08925 1.43851 1.05809 1.07107 1.54998 1.22453 1.02993 0.77823 1.04887 0.90484 0.88873 0.90599 0.75656 0.91051 0.93250 0.96902 0.95737 0.93124 0.96105 0.95431 0.76005 0.82898 0.78042 0.89518 0.87192 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.74 9.52 71.24 0.68 -1.06 16 2 C 0.09 2.15 6.89 41.78 0.29 2.44 16 3 C -0.27 -7.56 6.29 -19.04 -0.12 -7.68 16 4 C 0.58 19.38 7.81 86.62 0.68 20.06 16 5 O -0.59 -23.06 14.81 -4.12 -0.06 -23.12 16 6 N -0.72 -21.92 5.40 -466.53 -2.52 -24.44 16 7 C 0.16 5.25 4.60 86.38 0.40 5.65 16 8 C -0.09 -3.07 2.93 -9.61 -0.03 -3.09 16 9 H 0.11 3.29 8.14 -2.38 -0.02 3.27 16 10 C 0.15 6.31 6.52 86.73 0.57 6.87 16 11 N -0.62 -32.75 3.33 -691.57 -2.30 -35.05 16 12 C -0.34 -20.30 10.05 84.03 0.84 -19.46 16 13 H 0.05 3.25 7.96 -2.91 -0.02 3.23 16 14 C -0.08 -4.50 5.09 84.86 0.43 -4.07 16 15 N -0.95 -58.49 12.82 21.65 0.28 -58.22 16 16 Si 1.12 52.78 30.00 68.60 2.06 54.84 16 17 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 20 C 0.12 5.59 4.97 86.93 0.43 6.02 16 21 C 0.11 3.69 4.17 32.06 0.13 3.83 16 22 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 23 O -0.57 -20.14 12.25 -148.98 -1.82 -21.97 16 24 C -0.19 -4.08 10.56 23.62 0.25 -3.83 16 25 C -0.01 -0.14 11.34 83.11 0.94 0.80 16 26 N -0.44 -7.03 3.09 -533.21 -1.65 -8.68 16 27 C 0.06 0.35 10.82 127.77 1.38 1.73 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.09 1.12 6.92 -2.39 -0.02 1.11 16 30 H 0.08 1.91 6.47 -2.39 -0.02 1.90 16 31 H 0.41 10.85 7.45 -92.71 -0.69 10.16 16 32 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.05 1.95 7.45 -2.39 -0.02 1.93 16 34 H 0.01 0.60 7.77 -2.39 -0.02 0.59 16 35 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.26 15.94 5.83 -92.71 -0.54 15.40 16 37 H 0.02 1.03 6.84 -2.39 -0.02 1.01 16 38 H 0.03 1.42 7.73 -2.39 -0.02 1.40 16 39 H 0.39 10.83 9.12 -74.06 -0.68 10.16 16 40 H 0.15 2.90 7.70 -2.91 -0.02 2.88 16 41 H 0.20 1.64 8.06 -2.91 -0.02 1.62 16 42 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.11 0.16 8.13 -2.38 -0.02 0.14 16 44 H 0.10 0.36 6.88 -2.38 -0.02 0.35 16 Total: -1.00 -82.82 357.71 0.75 -82.07 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: -0.11 Total: 26.35 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 6.87 Total: 8.21 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -6.19 Total: -126.38 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -1.89 Total: -45.09 kcal Atomic # 14 Polarization: 52.78 SS G_CDS: 2.06 Total: 54.84 kcal Total: -82.82 0.75 -82.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958390806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.756 kcal (2) G-P(sol) polarization free energy of solvation -82.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds