Wall clock time and date at job start Fri Apr 10 2020 17:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.67152 * 2 1 4 4 C 1.53073 * 109.70160 * 120.51344 * 2 1 3 5 5 C 1.50183 * 109.89224 * 168.65178 * 4 2 1 6 6 O 1.21276 * 118.24748 * 162.39675 * 5 4 2 7 7 N 1.33351 * 123.50346 * 342.41853 * 5 4 2 8 8 C 1.46115 * 124.18300 * 2.18219 * 7 5 4 9 9 H 1.08991 * 109.29249 * 101.20932 * 8 7 5 10 10 C 1.50702 * 109.51305 * 220.71023 * 8 7 5 11 11 O 1.21276 * 120.00104 * 20.91533 * 10 8 7 12 12 N 1.34781 * 119.99769 * 200.92168 * 10 8 7 13 13 C 1.46496 * 120.00024 * 179.97438 * 12 10 8 14 14 H 1.09007 * 115.51198 * 350.41330 * 13 12 10 15 15 C 1.52997 * 117.44428 * 205.00069 * 13 12 10 16 16 H 1.09001 * 119.53764 * 4.11125 * 15 13 12 17 17 C 1.54392 * 118.12566 * 159.20763 * 15 13 12 18 18 N 1.48148 * 104.61219 * 87.18990 * 17 15 13 19 19 C 1.36935 * 127.83785 * 140.42115 * 18 17 15 20 20 H 1.08010 * 119.99937 * 344.38410 * 19 18 17 21 21 C 1.38812 * 120.00702 * 164.38204 * 19 18 17 22 22 N 1.31617 * 119.99379 * 350.81842 * 21 19 18 23 23 Si 1.86796 * 120.00351 * 170.81223 * 21 19 18 24 24 H 1.48490 * 109.47331 * 94.81508 * 23 21 19 25 25 H 1.48506 * 109.46993 * 214.81631 * 23 21 19 26 26 H 1.48504 * 109.47213 * 334.81110 * 23 21 19 27 27 C 1.48150 * 104.32809 * 320.41196 * 18 17 15 28 28 C 1.52994 * 117.44496 * 135.75678 * 13 12 10 29 29 H 1.08992 * 119.54015 * 355.87917 * 28 13 12 30 30 C 1.52923 * 110.28358 * 341.02594 * 8 7 5 31 31 H 1.09000 * 109.47049 * 180.49816 * 1 2 3 32 32 H 1.08999 * 109.47198 * 300.50226 * 1 2 3 33 33 H 1.09002 * 109.46412 * 60.49763 * 1 2 3 34 34 H 1.08999 * 109.40157 * 288.77983 * 4 2 1 35 35 H 1.09001 * 109.39894 * 48.52444 * 4 2 1 36 36 H 0.97003 * 117.94380 * 182.22230 * 7 5 4 37 37 H 0.96994 * 120.00184 * 359.97438 * 12 10 8 38 38 H 1.08990 * 110.40844 * 205.96913 * 17 15 13 39 39 H 1.08996 * 110.40534 * 328.41210 * 17 15 13 40 40 H 0.97005 * 120.00112 * 179.97438 * 22 21 19 41 41 H 1.08995 * 110.40646 * 158.37136 * 27 18 17 42 42 H 1.08994 * 110.40557 * 280.68664 * 27 18 17 43 43 H 1.09003 * 109.60861 * 290.85686 * 30 8 7 44 44 H 1.09000 * 109.60014 * 170.53857 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0460 -0.7317 1.2415 5 6 3.5219 -0.9784 1.1128 6 8 4.1488 -1.2460 2.1159 7 7 4.1799 -0.9184 -0.0455 8 6 3.5641 -0.5629 -1.3220 9 1 3.7988 0.4749 -1.5584 10 6 4.1097 -1.4526 -2.4092 11 8 4.6187 -2.5158 -2.1242 12 7 4.0320 -1.0665 -3.6982 13 6 4.5628 -1.9311 -4.7550 14 1 5.1463 -2.7861 -4.4133 15 6 4.9899 -1.2638 -6.0639 16 1 4.9536 -0.1778 -6.1502 17 6 5.9746 -2.0220 -6.9799 18 7 5.1124 -2.8757 -7.8300 19 6 5.2566 -3.1511 -9.1636 20 1 5.9089 -2.5431 -9.7731 21 6 4.5646 -4.2116 -9.7322 22 7 3.9148 -5.0605 -8.9645 23 14 4.5556 -4.4339 -11.5869 24 1 5.6293 -5.3825 -11.9770 25 1 3.2394 -4.9728 -12.0144 26 1 4.7905 -3.1229 -12.2437 27 6 4.0589 -3.3641 -6.9100 28 6 3.7067 -2.1187 -6.0091 29 1 2.7146 -1.6696 -6.0545 30 6 2.0464 -0.7328 -1.2441 31 1 -0.3633 -1.0276 0.0089 32 1 -0.3633 0.5216 0.8854 33 1 -0.3632 0.5061 -0.8945 34 1 1.8565 -0.1229 2.1256 35 1 1.5270 -1.6850 1.3418 36 1 5.1278 -1.1245 -0.0411 37 1 3.6246 -0.2163 -3.9261 38 1 6.5389 -1.3206 -7.5944 39 1 6.6502 -2.6369 -6.3853 40 1 3.4309 -5.8014 -9.3617 41 1 3.1782 -3.6752 -7.4716 42 1 4.4348 -4.1899 -6.3060 43 1 1.8001 -1.7923 -1.1730 44 1 1.5847 -0.3092 -2.1360 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000959938255.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:32 Heat of formation + Delta-G solvation = -19.380097 kcal Electronic energy + Delta-G solvation = -25094.097632 eV Core-core repulsion = 21433.711847 eV Total energy + Delta-G solvation = -3660.385786 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.06268 -39.62038 -38.35450 -36.94295 -34.66407 -34.29525 -32.79748 -30.74798 -29.85480 -28.30986 -27.07067 -25.92583 -24.92865 -22.21625 -21.71040 -20.73063 -20.31144 -19.61550 -19.37611 -17.82041 -17.25403 -16.94444 -16.75370 -16.03499 -15.57421 -15.12002 -14.76575 -14.72706 -14.25811 -14.03067 -13.77914 -13.62546 -13.32429 -12.99197 -12.80764 -12.56321 -12.33185 -12.19356 -11.89872 -11.61908 -11.52426 -11.37553 -11.24376 -11.02921 -10.87414 -10.44677 -10.32273 -10.29768 -10.19335 -9.94587 -9.80125 -9.38094 -9.23893 -8.80369 -8.45621 -6.92710 -5.84849 -3.19536 2.29230 2.32722 2.72458 3.14382 3.34974 3.40587 3.42607 4.08104 4.12635 4.15693 4.20958 4.26823 4.42423 4.55356 4.67651 4.91200 5.06316 5.07301 5.12835 5.20174 5.29657 5.31040 5.31507 5.37598 5.49935 5.51346 5.67096 5.73584 5.80419 5.80681 5.96072 6.08718 6.42782 6.45221 6.61801 6.67047 6.80068 7.00696 7.28049 7.36624 7.47903 7.66372 7.92616 8.04715 8.14911 9.05532 9.68265 10.44729 11.29403 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.029962 B = 0.002539 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.290785 B =11025.040562 C =11386.583115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.082 0.918 4 C -0.132 4.132 5 C 0.525 3.475 6 O -0.555 6.555 7 N -0.700 5.700 8 C 0.128 3.872 9 H 0.099 0.901 10 C 0.503 3.497 11 O -0.524 6.524 12 N -0.691 5.691 13 C 0.091 3.909 14 H 0.132 0.868 15 C -0.182 4.182 16 H 0.103 0.897 17 C 0.155 3.845 18 N -0.592 5.592 19 C -0.229 4.229 20 H 0.077 0.923 21 C -0.005 4.005 22 N -0.914 5.914 23 Si 0.914 3.086 24 H -0.287 1.287 25 H -0.289 1.289 26 H -0.280 1.280 27 C 0.187 3.813 28 C -0.181 4.181 29 H 0.106 0.894 30 C -0.125 4.125 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.405 0.595 37 H 0.400 0.600 38 H 0.052 0.948 39 H 0.027 0.973 40 H 0.255 0.745 41 H 0.090 0.910 42 H 0.030 0.970 43 H 0.083 0.917 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 14.190 16.051 22.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.312 3.688 6 O -0.433 6.433 7 N -0.353 5.353 8 C 0.019 3.981 9 H 0.117 0.883 10 C 0.287 3.713 11 O -0.398 6.398 12 N -0.340 5.340 13 C -0.014 4.014 14 H 0.150 0.850 15 C -0.203 4.203 16 H 0.121 0.879 17 C 0.028 3.972 18 N -0.316 5.316 19 C -0.357 4.357 20 H 0.095 0.905 21 C -0.202 4.202 22 N -0.560 5.560 23 Si 0.743 3.257 24 H -0.214 1.214 25 H -0.215 1.215 26 H -0.205 1.205 27 C 0.061 3.939 28 C -0.203 4.203 29 H 0.124 0.876 30 C -0.163 4.163 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.242 0.758 37 H 0.234 0.766 38 H 0.071 0.929 39 H 0.045 0.955 40 H 0.065 0.935 41 H 0.108 0.892 42 H 0.048 0.952 43 H 0.102 0.898 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.918 13.143 16.572 22.254 hybrid contribution 0.079 0.296 -1.249 1.286 sum -6.839 13.439 15.322 21.498 Atomic orbital electron populations 1.21817 0.93567 1.02610 1.02452 1.21255 0.96963 0.99725 0.93205 0.89916 1.21782 0.91672 1.03597 1.00168 1.20138 0.90400 0.75846 0.82369 1.90776 1.68350 1.49079 1.35139 1.45315 1.13763 1.70166 1.06031 1.20929 0.95043 0.98634 0.83536 0.88317 1.20662 0.79738 0.87329 0.83590 1.90774 1.43697 1.22975 1.82402 1.45350 1.60560 1.22723 1.05388 1.21941 1.01578 0.96113 0.81816 0.85034 1.24276 1.00609 0.98176 0.97221 0.87950 1.21137 0.91675 0.92890 0.91484 1.45126 1.25756 1.55036 1.05634 1.18990 1.25150 1.09576 0.81986 0.90492 1.24915 1.01020 0.95916 0.98366 1.69895 1.37053 1.15689 1.33362 0.86089 0.77159 0.77807 0.84601 1.21444 1.21535 1.20501 1.21650 0.94216 0.88822 0.89208 1.25466 0.94480 1.02709 0.97598 0.87584 1.21975 0.91201 1.03220 0.99924 0.92103 0.92043 0.91899 0.87916 0.87879 0.75795 0.76639 0.92917 0.95487 0.93468 0.89227 0.95225 0.89808 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.20 37.16 0.34 -0.27 16 2 C -0.09 -0.47 2.80 -90.41 -0.25 -0.73 16 3 H 0.08 0.35 8.13 -51.93 -0.42 -0.07 16 4 C -0.13 -0.95 5.36 -28.10 -0.15 -1.10 16 5 C 0.53 5.84 7.71 -11.87 -0.09 5.74 16 6 O -0.56 -8.57 17.78 5.56 0.10 -8.47 16 7 N -0.70 -7.12 4.81 -55.76 -0.27 -7.39 16 8 C 0.13 1.01 3.47 -69.33 -0.24 0.77 16 9 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 10 C 0.50 5.96 6.98 -10.98 -0.08 5.88 16 11 O -0.52 -8.75 15.99 5.56 0.09 -8.67 16 12 N -0.69 -7.69 5.56 -53.81 -0.30 -7.99 16 13 C 0.09 1.40 5.92 -67.94 -0.40 1.00 16 14 H 0.13 2.39 7.40 -51.92 -0.38 2.01 16 15 C -0.18 -2.97 6.98 -89.22 -0.62 -3.59 16 16 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 17 C 0.15 3.13 7.04 -2.41 -0.02 3.11 16 18 N -0.59 -14.77 3.38 -166.73 -0.56 -15.33 16 19 C -0.23 -6.24 10.35 -15.06 -0.16 -6.39 16 20 H 0.08 2.02 7.85 -52.48 -0.41 1.61 16 21 C 0.00 -0.13 5.40 -17.43 -0.09 -0.23 16 22 N -0.91 -26.36 10.87 55.49 0.60 -25.76 16 23 Si 0.91 21.51 29.56 -169.99 -5.03 16.49 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C 0.19 4.38 5.76 -0.57 0.00 4.38 16 28 C -0.18 -3.19 7.34 -87.38 -0.64 -3.83 16 29 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 30 C -0.13 -0.78 4.57 -26.59 -0.12 -0.90 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.41 4.55 8.48 -40.82 -0.35 4.21 16 37 H 0.40 3.08 8.83 -40.82 -0.36 2.72 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.09 2.34 6.52 -51.93 -0.34 2.00 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 44 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 359.43 15.07 5.42 5.42 Total: -1.00 -34.46 359.43 -9.37 -43.83 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.89 Total: 4.01 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -2.53 Total: 3.86 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.53 Total: -56.47 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: 0.19 Total: -17.13 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.46 -9.37 -43.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000959938255.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.447 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds