Wall clock time and date at job start Fri Apr 10 2020 17:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00104 * 2 1 4 4 H 1.48500 * 109.47233 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47295 * 300.00043 * 3 2 1 6 6 H 1.48503 * 109.47125 * 60.00115 * 3 2 1 7 7 C 1.38817 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99604 * 189.11296 * 7 2 1 9 9 N 1.36937 * 119.99937 * 9.10572 * 7 2 1 10 10 C 1.48143 * 127.83740 * 15.61889 * 9 7 2 11 11 C 1.54389 * 104.61530 * 140.41449 * 10 9 7 12 12 H 1.08995 * 118.18645 * 244.20217 * 11 10 9 13 13 C 1.54283 * 104.95986 * 23.86923 * 11 10 9 14 14 H 1.09001 * 123.13011 * 221.64167 * 13 11 10 15 15 C 1.48147 * 127.83779 * 195.62250 * 9 7 2 16 16 C 1.52998 * 59.72584 * 114.13963 * 13 11 10 17 17 H 1.08999 * 117.44063 * 252.39608 * 16 13 11 18 18 N 1.46491 * 117.44420 * 107.64660 * 16 13 11 19 19 C 1.34779 * 120.00027 * 155.00276 * 18 16 13 20 20 O 1.21279 * 120.00207 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00244 * 179.97438 * 19 18 16 22 22 C 1.52997 * 109.47324 * 179.97438 * 21 19 18 23 23 H 1.09000 * 109.60233 * 54.67513 * 22 21 19 24 24 C 1.53340 * 109.60300 * 175.00238 * 22 21 19 25 25 C 1.53079 * 108.42448 * 187.28586 * 24 22 21 26 26 C 1.50175 * 109.89008 * 311.10062 * 25 24 22 27 27 O 1.21277 * 118.24010 * 197.58449 * 26 25 24 28 28 N 1.33352 * 123.50982 * 17.57671 * 26 25 24 29 29 C 1.45753 * 124.10777 * 357.78511 * 28 26 25 30 30 H 0.96997 * 120.00028 * 0.02562 * 1 2 3 31 31 H 1.09001 * 110.40931 * 259.19532 * 10 9 7 32 32 H 1.08996 * 110.40978 * 21.51181 * 10 9 7 33 33 H 1.08995 * 110.41059 * 100.79782 * 15 9 7 34 34 H 1.09004 * 110.40170 * 338.36642 * 15 9 7 35 35 H 0.97000 * 120.00105 * 335.00294 * 18 16 13 36 36 H 1.09009 * 109.47142 * 59.99894 * 21 19 18 37 37 H 1.09003 * 109.47233 * 300.00121 * 21 19 18 38 38 H 1.09002 * 109.67594 * 67.55561 * 24 22 21 39 39 H 1.08998 * 109.70704 * 307.03661 * 24 22 21 40 40 H 1.09000 * 109.39763 * 71.22819 * 25 24 22 41 41 H 1.08999 * 109.40178 * 190.96858 * 25 24 22 42 42 H 0.96997 * 117.94635 * 177.77953 * 28 26 25 43 43 H 1.09001 * 109.29818 * 258.76146 * 29 28 26 44 44 H 1.08998 * 109.13841 * 139.27618 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0800 -1.2081 0.1476 9 7 1.3385 -2.3805 -0.1887 10 6 -0.0338 -2.5705 -0.7136 11 6 0.0648 -3.8162 -1.6201 12 1 -0.1213 -3.6927 -2.6870 13 6 1.2865 -4.5970 -1.0927 14 1 2.0187 -5.0703 -1.7468 15 6 1.8192 -3.7546 0.0864 16 6 -0.1181 -5.1925 -0.9770 17 1 -0.5689 -5.2269 0.0147 18 7 -0.4517 -6.3119 -1.8612 19 6 -1.4117 -7.1885 -1.5056 20 8 -1.9990 -7.0509 -0.4535 21 6 -1.7554 -8.3397 -2.4154 22 6 -2.8677 -9.1768 -1.7808 23 1 -3.7177 -8.5366 -1.5445 24 6 -3.3063 -10.2747 -2.7573 25 6 -4.5359 -10.9767 -2.1756 26 6 -4.2821 -11.3480 -0.7428 27 8 -4.9995 -12.1807 -0.2300 28 7 -3.3101 -10.8113 -0.0043 29 6 -2.3476 -9.8371 -0.5032 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7320 -2.7497 0.1040 32 1 -0.3431 -1.7004 -1.2926 33 1 1.4104 -4.1187 1.0289 34 1 2.9087 -3.7786 0.1090 35 1 0.0183 -6.4222 -2.7025 36 1 -0.8726 -8.9618 -2.5636 37 1 -2.0939 -7.9543 -3.3771 38 1 -2.4988 -10.9955 -2.8859 39 1 -3.5585 -9.8307 -3.7203 40 1 -5.3944 -10.3072 -2.2296 41 1 -4.7446 -11.8781 -2.7518 42 1 -3.2392 -11.0865 0.9232 43 1 -1.4039 -10.3394 -0.7158 44 1 -2.1858 -9.0730 0.2571 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960249913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:39 Heat of formation + Delta-G solvation = -23.888510 kcal Electronic energy + Delta-G solvation = -24757.422761 eV Core-core repulsion = 21096.841476 eV Total energy + Delta-G solvation = -3660.581285 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.75048 -39.82717 -38.52817 -36.86010 -34.54500 -33.72186 -32.74383 -31.66594 -30.28145 -27.31402 -27.18152 -25.59035 -24.78012 -22.69999 -21.67362 -20.61744 -20.12612 -19.41581 -19.34358 -17.43897 -17.21417 -16.91155 -16.36231 -16.30605 -15.75833 -15.34084 -14.78513 -14.69495 -14.28493 -14.01963 -13.71812 -13.50526 -13.44127 -13.17699 -12.81056 -12.59531 -12.27468 -11.93294 -11.69134 -11.63377 -11.45773 -11.34186 -11.25967 -11.03105 -10.88287 -10.46553 -10.25596 -10.18388 -10.02902 -9.84778 -9.77632 -9.28187 -9.24253 -8.79345 -8.40076 -6.91461 -5.83831 -3.18526 2.41040 2.50767 2.99224 3.05928 3.35079 3.41025 3.43572 4.14360 4.20234 4.26829 4.28000 4.39791 4.43355 4.65870 4.90116 5.01203 5.04562 5.09375 5.15278 5.23043 5.30403 5.33381 5.35876 5.40066 5.44084 5.51627 5.69587 5.77659 5.83363 5.88277 6.08546 6.18286 6.45692 6.51599 6.62725 6.72871 6.82434 7.09505 7.30837 7.47109 7.49827 7.67760 7.96981 8.16113 8.17124 9.06596 9.69360 10.45829 11.30487 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.040786 B = 0.002208 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.348413 B =12680.297464 C =12753.865997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.185 3.815 11 C -0.178 4.178 12 H 0.101 0.899 13 C -0.183 4.183 14 H 0.103 0.897 15 C 0.155 3.845 16 C 0.094 3.906 17 H 0.131 0.869 18 N -0.697 5.697 19 C 0.512 3.488 20 O -0.537 6.537 21 C -0.133 4.133 22 C -0.089 4.089 23 H 0.092 0.908 24 C -0.120 4.120 25 C -0.135 4.135 26 C 0.517 3.483 27 O -0.566 6.566 28 N -0.716 5.716 29 C 0.107 3.893 30 H 0.254 0.746 31 H 0.026 0.974 32 H 0.091 0.909 33 H 0.027 0.973 34 H 0.052 0.948 35 H 0.399 0.601 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.400 0.600 43 H 0.062 0.938 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.072 -20.145 -9.027 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.059 3.941 11 C -0.200 4.200 12 H 0.119 0.881 13 C -0.204 4.204 14 H 0.121 0.879 15 C 0.028 3.972 16 C -0.012 4.012 17 H 0.149 0.851 18 N -0.346 5.346 19 C 0.298 3.702 20 O -0.413 6.413 21 C -0.174 4.174 22 C -0.108 4.108 23 H 0.111 0.889 24 C -0.158 4.158 25 C -0.174 4.174 26 C 0.304 3.696 27 O -0.445 6.445 28 N -0.367 5.367 29 C -0.017 4.017 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.109 0.891 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.233 0.767 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.235 0.765 43 H 0.080 0.920 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.890 -20.115 -8.202 22.069 hybrid contribution 0.880 0.835 -0.273 1.243 sum -3.010 -19.281 -8.475 21.275 Atomic orbital electron populations 1.69905 1.05073 1.25402 1.55651 1.24919 0.95657 0.98048 1.01678 0.86036 0.78857 0.83470 0.77310 1.20349 1.21602 1.21642 1.19032 0.90838 0.82265 1.43452 0.90455 1.45188 1.13389 0.99982 1.73087 1.21053 0.86913 0.92517 0.93667 1.24725 1.01858 0.92913 1.00479 0.88061 1.24284 0.90189 1.02482 1.03491 0.87875 1.21126 0.97216 0.85944 0.92902 1.21860 0.98682 0.85045 0.95565 0.85116 1.45417 1.38598 1.27320 1.23218 1.20598 0.79262 0.83133 0.87201 1.90699 1.51332 1.74586 1.24727 1.21690 1.00363 0.95686 0.99655 1.21214 0.98872 0.96315 0.94411 0.88945 1.21761 0.97458 0.97578 0.98997 1.21627 1.00166 1.03183 0.92453 1.20210 0.79657 0.80479 0.89212 1.90757 1.47048 1.33785 1.72938 1.45476 1.31857 1.44238 1.15095 1.21672 0.90754 0.91471 0.97790 0.93531 0.95604 0.89086 0.95555 0.92964 0.76742 0.88422 0.88008 0.90913 0.90102 0.88065 0.88087 0.76510 0.91980 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.50 10.86 55.49 0.60 -25.89 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 3 Si 0.91 21.59 29.56 -169.99 -5.03 16.56 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.23 -6.23 10.35 -15.06 -0.16 -6.38 16 8 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 9 N -0.59 -14.86 3.38 -168.86 -0.57 -15.43 16 10 C 0.18 4.35 5.70 -2.41 -0.01 4.33 16 11 C -0.18 -3.20 7.06 -89.22 -0.63 -3.83 16 12 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 13 C -0.18 -3.01 7.05 -89.22 -0.63 -3.64 16 14 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 15 C 0.15 3.13 7.04 -2.41 -0.02 3.12 16 16 C 0.09 1.45 5.97 -67.93 -0.41 1.04 16 17 H 0.13 2.33 7.40 -51.93 -0.38 1.95 16 18 N -0.70 -7.69 5.56 -53.81 -0.30 -7.99 16 19 C 0.51 5.52 7.59 -10.98 -0.08 5.44 16 20 O -0.54 -7.97 13.63 5.56 0.08 -7.89 16 21 C -0.13 -0.80 5.17 -27.88 -0.14 -0.94 16 22 C -0.09 -0.61 1.89 -90.48 -0.17 -0.78 16 23 H 0.09 0.81 7.93 -51.93 -0.41 0.40 16 24 C -0.12 -0.60 5.33 -26.51 -0.14 -0.74 16 25 C -0.13 -0.93 6.03 -28.10 -0.17 -1.10 16 26 C 0.52 5.46 7.71 -11.87 -0.09 5.37 16 27 O -0.57 -8.38 17.78 5.56 0.10 -8.28 16 28 N -0.72 -6.47 5.45 -61.39 -0.33 -6.80 16 29 C 0.11 0.85 6.11 -4.48 -0.03 0.82 16 30 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 2.40 6.51 -51.93 -0.34 2.06 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.40 3.19 8.83 -40.82 -0.36 2.83 16 36 H 0.10 0.38 8.10 -51.92 -0.42 -0.04 16 37 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.32 8.13 -51.93 -0.42 -0.10 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.40 3.45 8.80 -40.82 -0.36 3.09 16 43 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 44 H 0.10 0.99 6.24 -51.93 -0.32 0.67 16 LS Contribution 355.42 15.07 5.36 5.36 Total: -1.00 -34.47 355.42 -9.66 -44.13 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.79 Total: 3.80 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -2.77 Total: 2.44 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.60 Total: -56.12 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.17 Total: -16.17 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.47 -9.66 -44.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960249913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.239 kcal (2) G-P(sol) polarization free energy of solvation -34.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds