Wall clock time and date at job start Fri Apr 10 2020 17:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00104 * 2 1 4 4 H 1.48500 * 109.47233 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47295 * 300.00043 * 3 2 1 6 6 H 1.48503 * 109.47125 * 60.00115 * 3 2 1 7 7 C 1.38817 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99604 * 189.11296 * 7 2 1 9 9 N 1.36937 * 119.99937 * 9.10572 * 7 2 1 10 10 C 1.48143 * 127.83740 * 15.61889 * 9 7 2 11 11 C 1.54389 * 104.61530 * 140.41449 * 10 9 7 12 12 H 1.08995 * 118.18645 * 244.20217 * 11 10 9 13 13 C 1.54283 * 104.95986 * 23.86923 * 11 10 9 14 14 H 1.09001 * 123.13011 * 221.64167 * 13 11 10 15 15 C 1.48147 * 127.83779 * 195.62250 * 9 7 2 16 16 C 1.52998 * 59.72584 * 114.13963 * 13 11 10 17 17 H 1.08999 * 117.44063 * 252.39608 * 16 13 11 18 18 N 1.46491 * 117.44420 * 107.64660 * 16 13 11 19 19 C 1.34779 * 120.00027 * 155.00276 * 18 16 13 20 20 O 1.21279 * 120.00207 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00244 * 179.97438 * 19 18 16 22 22 C 1.52997 * 109.47324 * 179.97438 * 21 19 18 23 23 H 1.09000 * 109.60233 * 54.67513 * 22 21 19 24 24 C 1.53340 * 109.60300 * 175.00238 * 22 21 19 25 25 C 1.53079 * 108.42448 * 187.28586 * 24 22 21 26 26 C 1.50175 * 109.89008 * 311.10062 * 25 24 22 27 27 O 1.21277 * 118.24010 * 197.58449 * 26 25 24 28 28 N 1.33352 * 123.50982 * 17.57671 * 26 25 24 29 29 C 1.45753 * 124.10777 * 357.78511 * 28 26 25 30 30 H 0.96997 * 120.00028 * 0.02562 * 1 2 3 31 31 H 1.09001 * 110.40931 * 259.19532 * 10 9 7 32 32 H 1.08996 * 110.40978 * 21.51181 * 10 9 7 33 33 H 1.08995 * 110.41059 * 100.79782 * 15 9 7 34 34 H 1.09004 * 110.40170 * 338.36642 * 15 9 7 35 35 H 0.97000 * 120.00105 * 335.00294 * 18 16 13 36 36 H 1.09009 * 109.47142 * 59.99894 * 21 19 18 37 37 H 1.09003 * 109.47233 * 300.00121 * 21 19 18 38 38 H 1.09002 * 109.67594 * 67.55561 * 24 22 21 39 39 H 1.08998 * 109.70704 * 307.03661 * 24 22 21 40 40 H 1.09000 * 109.39763 * 71.22819 * 25 24 22 41 41 H 1.08999 * 109.40178 * 190.96858 * 25 24 22 42 42 H 0.96997 * 117.94635 * 177.77953 * 28 26 25 43 43 H 1.09001 * 109.29818 * 258.76146 * 29 28 26 44 44 H 1.08998 * 109.13841 * 139.27618 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0800 -1.2081 0.1476 9 7 1.3385 -2.3805 -0.1887 10 6 -0.0338 -2.5705 -0.7136 11 6 0.0648 -3.8162 -1.6201 12 1 -0.1213 -3.6927 -2.6870 13 6 1.2865 -4.5970 -1.0927 14 1 2.0187 -5.0703 -1.7468 15 6 1.8192 -3.7546 0.0864 16 6 -0.1181 -5.1925 -0.9770 17 1 -0.5689 -5.2269 0.0147 18 7 -0.4517 -6.3119 -1.8612 19 6 -1.4117 -7.1885 -1.5056 20 8 -1.9990 -7.0509 -0.4535 21 6 -1.7554 -8.3397 -2.4154 22 6 -2.8677 -9.1768 -1.7808 23 1 -3.7177 -8.5366 -1.5445 24 6 -3.3063 -10.2747 -2.7573 25 6 -4.5359 -10.9767 -2.1756 26 6 -4.2821 -11.3480 -0.7428 27 8 -4.9995 -12.1807 -0.2300 28 7 -3.3101 -10.8113 -0.0043 29 6 -2.3476 -9.8371 -0.5032 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7320 -2.7497 0.1040 32 1 -0.3431 -1.7004 -1.2926 33 1 1.4104 -4.1187 1.0289 34 1 2.9087 -3.7786 0.1090 35 1 0.0183 -6.4222 -2.7025 36 1 -0.8726 -8.9618 -2.5636 37 1 -2.0939 -7.9543 -3.3771 38 1 -2.4988 -10.9955 -2.8859 39 1 -3.5585 -9.8307 -3.7203 40 1 -5.3944 -10.3072 -2.2296 41 1 -4.7446 -11.8781 -2.7518 42 1 -3.2392 -11.0865 0.9232 43 1 -1.4039 -10.3394 -0.7158 44 1 -2.1858 -9.0730 0.2571 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960249913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:38 Heat of formation + Delta-G solvation = -49.961922 kcal Electronic energy + Delta-G solvation = -24758.553389 eV Core-core repulsion = 21096.841476 eV Total energy + Delta-G solvation = -3661.711913 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.52201 -40.89193 -39.82858 -37.66788 -36.02426 -34.46222 -34.20165 -32.49252 -31.83540 -28.92563 -28.21406 -27.23363 -25.38023 -23.79149 -22.85760 -21.89270 -21.28202 -20.85476 -19.98140 -18.87655 -18.21687 -18.02963 -17.54311 -17.06537 -16.75066 -16.46836 -16.09866 -15.68670 -15.44892 -15.00110 -14.90107 -14.65162 -14.50919 -14.30811 -13.91205 -13.71763 -13.36764 -13.30405 -13.01778 -12.87871 -12.74972 -12.47021 -12.17739 -12.10644 -12.00587 -11.92458 -11.86004 -11.72938 -11.61376 -10.92110 -10.81955 -10.74160 -10.63141 -10.05704 -9.62686 -8.93051 -7.92713 -5.29760 1.46782 1.47232 1.58544 1.61752 1.66071 2.06014 2.37235 2.48235 2.88980 3.28107 3.57263 3.59972 3.69125 3.76238 3.85932 3.86775 3.97704 4.06427 4.17280 4.40632 4.43071 4.48052 4.53867 4.58684 4.71095 4.77843 4.82229 4.88236 4.93947 5.00097 5.02196 5.04134 5.21467 5.30212 5.40642 5.43374 5.47057 5.61033 5.64848 5.77983 6.16144 6.36718 6.64607 6.99365 7.18967 7.36307 7.66774 8.44881 9.21342 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.040786 B = 0.002208 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.348413 B =12680.297464 C =12753.865997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.290 1.290 6 H -0.294 1.294 7 C -0.239 4.239 8 H 0.085 0.915 9 N -0.618 5.618 10 C 0.188 3.812 11 C -0.186 4.186 12 H 0.123 0.877 13 C -0.160 4.160 14 H 0.143 0.857 15 C 0.145 3.855 16 C 0.120 3.880 17 H 0.101 0.899 18 N -0.684 5.684 19 C 0.507 3.493 20 O -0.583 6.583 21 C -0.119 4.119 22 C -0.089 4.089 23 H 0.068 0.932 24 C -0.108 4.108 25 C -0.133 4.133 26 C 0.508 3.492 27 O -0.619 6.619 28 N -0.713 5.713 29 C 0.106 3.894 30 H 0.249 0.751 31 H -0.009 1.009 32 H 0.055 0.945 33 H 0.017 0.983 34 H 0.065 0.935 35 H 0.420 0.580 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.397 0.603 43 H 0.085 0.915 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 -21.887 -12.026 25.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.216 1.216 6 H -0.221 1.221 7 C -0.367 4.367 8 H 0.102 0.898 9 N -0.342 5.342 10 C 0.062 3.938 11 C -0.208 4.208 12 H 0.141 0.859 13 C -0.180 4.180 14 H 0.161 0.839 15 C 0.020 3.980 16 C 0.012 3.988 17 H 0.119 0.881 18 N -0.334 5.334 19 C 0.296 3.704 20 O -0.463 6.463 21 C -0.158 4.158 22 C -0.109 4.109 23 H 0.087 0.913 24 C -0.145 4.145 25 C -0.172 4.172 26 C 0.297 3.703 27 O -0.502 6.502 28 N -0.362 5.362 29 C -0.018 4.018 30 H 0.058 0.942 31 H 0.009 0.991 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.084 0.916 35 H 0.258 0.742 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.107 0.893 39 H 0.127 0.873 40 H 0.123 0.877 41 H 0.130 0.870 42 H 0.232 0.768 43 H 0.103 0.897 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.984 -21.887 -11.243 24.686 hybrid contribution 0.285 1.337 0.792 1.579 sum -1.699 -20.551 -10.452 23.118 Atomic orbital electron populations 1.70116 1.06666 1.25697 1.57291 1.25796 0.96493 1.01489 1.02149 0.84967 0.78371 0.78998 0.76695 1.18608 1.21644 1.22124 1.19446 0.91434 0.83472 1.42368 0.89779 1.45513 1.13779 1.01271 1.73678 1.20758 0.85971 0.94004 0.93064 1.24377 1.04310 0.91713 1.00382 0.85933 1.24178 0.90757 1.01456 1.01635 0.83926 1.21299 0.98085 0.84393 0.94223 1.21312 0.97470 0.85138 0.94868 0.88104 1.45243 1.39049 1.25783 1.23366 1.21600 0.77968 0.83696 0.87140 1.90710 1.52747 1.75714 1.27119 1.21736 1.01359 0.93613 0.99116 1.21206 0.98521 0.96692 0.94432 0.91343 1.21737 0.96739 0.96904 0.99154 1.21688 1.01545 1.04049 0.89932 1.20963 0.78931 0.79639 0.90718 1.90727 1.48904 1.36294 1.74316 1.45585 1.31689 1.43841 1.15075 1.21761 0.91398 0.90760 0.97839 0.94151 0.99139 0.92628 0.96516 0.91635 0.74221 0.84815 0.84817 0.89290 0.87317 0.87653 0.86968 0.76850 0.89660 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.43 10.86 21.65 0.24 -57.19 16 2 C -0.07 -3.72 5.40 84.86 0.46 -3.27 16 3 Si 0.98 45.09 29.56 68.60 2.03 47.12 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 7 C -0.24 -13.23 10.35 84.03 0.87 -12.36 16 8 H 0.08 4.42 7.84 -2.91 -0.02 4.40 16 9 N -0.62 -31.63 3.38 -688.16 -2.33 -33.96 16 10 C 0.19 9.25 5.70 86.54 0.49 9.75 16 11 C -0.19 -6.53 7.06 -9.88 -0.07 -6.60 16 12 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 13 C -0.16 -4.86 7.05 -9.89 -0.07 -4.93 16 14 H 0.14 3.31 8.14 -2.39 -0.02 3.29 16 15 C 0.15 5.82 7.04 86.53 0.61 6.43 16 16 C 0.12 3.51 5.97 44.99 0.27 3.78 16 17 H 0.10 3.67 7.40 -2.39 -0.02 3.65 16 18 N -0.68 -12.70 5.56 -442.54 -2.46 -15.16 16 19 C 0.51 9.52 7.59 87.66 0.67 10.19 16 20 O -0.58 -17.06 13.63 -3.03 -0.04 -17.11 16 21 C -0.12 -0.83 5.17 29.85 0.15 -0.68 16 22 C -0.09 -0.95 1.89 -10.71 -0.02 -0.97 16 23 H 0.07 1.09 7.93 -2.39 -0.02 1.07 16 24 C -0.11 -0.61 5.33 30.73 0.16 -0.45 16 25 C -0.13 -1.54 6.03 29.71 0.18 -1.36 16 26 C 0.51 10.52 7.71 87.71 0.68 11.19 16 27 O -0.62 -18.80 17.78 -3.02 -0.05 -18.85 16 28 N -0.71 -12.63 5.45 -467.32 -2.55 -15.17 16 29 C 0.11 1.49 6.11 86.50 0.53 2.02 16 30 H 0.25 14.58 8.31 -92.71 -0.77 13.80 16 31 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 32 H 0.06 3.09 6.51 -2.39 -0.02 3.08 16 33 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.42 4.48 8.83 -92.71 -0.82 3.66 16 36 H 0.13 0.12 8.10 -2.38 -0.02 0.10 16 37 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.09 0.30 8.13 -2.39 -0.02 0.28 16 39 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.11 1.15 8.14 -2.39 -0.02 1.14 16 41 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.40 7.10 8.80 -92.71 -0.82 6.28 16 43 H 0.09 0.82 8.08 -2.39 -0.02 0.81 16 44 H 0.07 1.47 6.24 -2.39 -0.01 1.45 16 Total: -1.00 -81.87 355.42 -0.86 -82.74 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -0.61 Total: 14.85 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 4.91 Total: 12.74 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -7.10 Total: -121.48 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.09 Total: -35.96 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -81.87 -0.86 -82.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960249913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.774 kcal (2) G-P(sol) polarization free energy of solvation -81.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds