Wall clock time and date at job start Fri Apr 10 2020 17:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.66904 * 2 1 4 4 O 1.21288 * 119.99863 * 120.49987 * 3 2 1 5 5 N 1.34770 * 120.00360 * 300.49620 * 3 2 1 6 6 C 1.46496 * 120.00367 * 179.97438 * 5 3 2 7 7 H 1.09003 * 115.51504 * 9.58912 * 6 5 3 8 8 C 1.52998 * 117.44834 * 224.24313 * 6 5 3 9 9 H 1.08999 * 119.53886 * 4.11711 * 8 6 5 10 10 C 1.54382 * 118.12519 * 160.80777 * 8 6 5 11 11 N 1.48148 * 104.61803 * 87.19476 * 10 8 6 12 12 C 1.36933 * 127.84263 * 140.41726 * 11 10 8 13 13 H 1.08005 * 119.99708 * 340.85926 * 12 11 10 14 14 C 1.38806 * 120.00337 * 160.85901 * 12 11 10 15 15 N 1.31624 * 120.00187 * 163.44400 * 14 12 11 16 16 Si 1.86792 * 120.00174 * 343.44800 * 14 12 11 17 17 H 1.48503 * 109.47467 * 85.38157 * 16 14 12 18 18 H 1.48503 * 109.47637 * 205.38529 * 16 14 12 19 19 H 1.48506 * 109.46960 * 325.38223 * 16 14 12 20 20 C 1.48147 * 104.32275 * 320.41252 * 11 10 8 21 21 C 1.52998 * 117.44526 * 154.99815 * 6 5 3 22 22 H 1.09003 * 119.54161 * 354.29142 * 21 6 5 23 23 C 1.53347 * 109.67530 * 120.50075 * 2 1 3 24 24 C 1.52926 * 108.80955 * 52.15571 * 23 2 1 25 25 N 1.46116 * 110.28603 * 50.70042 * 24 23 2 26 26 C 1.33356 * 124.17867 * 341.02860 * 25 24 23 27 27 O 1.21279 * 118.24609 * 182.16056 * 26 25 24 28 28 C 1.50173 * 123.50577 * 2.18010 * 26 25 24 29 29 H 1.08997 * 109.47198 * 299.49719 * 1 2 3 30 30 H 1.09005 * 109.47199 * 59.50441 * 1 2 3 31 31 H 1.09001 * 109.46882 * 179.49616 * 1 2 3 32 32 H 0.97001 * 119.99914 * 359.97438 * 5 3 2 33 33 H 1.08998 * 110.40818 * 328.40927 * 10 8 6 34 34 H 1.09006 * 110.50817 * 206.02401 * 10 8 6 35 35 H 0.96999 * 120.00398 * 179.97438 * 15 14 12 36 36 H 1.09001 * 110.40600 * 280.80601 * 20 11 10 37 37 H 1.08998 * 110.50832 * 158.42163 * 20 11 10 38 38 H 1.09002 * 109.60427 * 171.99684 * 23 2 1 39 39 H 1.09000 * 109.60159 * 292.32469 * 23 2 1 40 40 H 1.08996 * 109.29837 * 171.14849 * 24 23 2 41 41 H 1.09000 * 109.29918 * 290.52486 * 24 23 2 42 42 H 0.97004 * 117.87666 * 160.99124 * 25 24 23 43 43 H 1.09000 * 109.40046 * 222.28815 * 28 26 25 44 44 H 1.08995 * 109.40390 * 102.54825 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0372 1.4190 0.0000 4 8 2.7434 1.8106 0.9051 5 7 1.7063 2.2530 -1.0056 6 6 2.1990 3.6326 -1.0054 7 1 2.9532 3.8617 -0.2525 8 6 1.2026 4.7373 -1.3629 9 1 0.1574 4.4823 -1.5378 10 6 1.5398 6.1847 -0.9448 11 7 2.3546 6.7164 -2.0620 12 6 2.3125 7.9707 -2.6098 13 1 1.4469 8.5981 -2.4564 14 6 3.3823 8.4359 -3.3620 15 7 3.2287 9.4788 -4.1501 16 14 5.0401 7.5816 -3.2561 17 1 5.0682 6.4363 -4.2010 18 1 6.1157 8.5423 -3.6106 19 1 5.2546 7.0871 -1.8723 20 6 3.2254 5.5832 -2.4523 21 6 2.3140 4.3406 -2.3568 22 1 2.1222 3.7831 -3.2736 23 6 2.0463 -0.7329 1.2441 24 6 1.3761 -2.1052 1.3216 25 7 1.5043 -2.8044 0.0450 26 6 1.7823 -2.2046 -1.1131 27 8 1.8247 -2.8849 -2.1162 28 6 2.0461 -0.7318 -1.2415 29 1 -0.3633 0.5060 0.8944 30 1 -0.3634 0.5215 -0.8855 31 1 -0.3633 -1.0276 -0.0090 32 1 1.1420 1.9397 -1.7297 33 1 2.1154 6.1887 -0.0192 34 1 0.6281 6.7705 -0.8271 35 1 3.9763 9.8041 -4.6755 36 1 4.0642 5.4931 -1.7620 37 1 3.5861 5.7125 -3.4727 38 1 3.1269 -0.8571 1.1733 39 1 1.8022 -0.1559 2.1361 40 1 1.8492 -2.6933 2.1080 41 1 0.3196 -1.9774 1.5577 42 1 1.3796 -3.7664 0.0403 43 1 1.5368 -0.3484 -2.1256 44 1 3.1183 -0.5633 -1.3414 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960521183.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:42 Heat of formation + Delta-G solvation = -9.698081 kcal Electronic energy + Delta-G solvation = -25616.095949 eV Core-core repulsion = 21956.130007 eV Total energy + Delta-G solvation = -3659.965942 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.41238 -39.86771 -38.78120 -36.93567 -34.85442 -34.25195 -32.61719 -30.84548 -30.08344 -28.37420 -27.85575 -25.99584 -25.01770 -23.54247 -21.69235 -20.83411 -20.45521 -19.70531 -18.82948 -17.96938 -17.10033 -16.96469 -16.72911 -16.32800 -15.81968 -15.33586 -15.18430 -15.02324 -14.49707 -13.89378 -13.73835 -13.69334 -13.60054 -13.17311 -12.98832 -12.60370 -12.57836 -12.26433 -12.21649 -11.92587 -11.78285 -11.47187 -11.37282 -11.25548 -11.08477 -10.78521 -10.56109 -10.22711 -10.14161 -9.79458 -9.59969 -9.54700 -9.36982 -8.85157 -8.65629 -7.16416 -5.96634 -3.31338 2.22090 2.34592 2.80365 2.82176 3.29938 3.45873 3.47179 3.92581 3.98101 4.04446 4.16299 4.26469 4.50123 4.53932 4.62226 4.78358 4.80325 4.95789 5.04805 5.05389 5.07592 5.14043 5.24369 5.29973 5.34737 5.44951 5.48538 5.59717 5.66236 5.69745 5.72150 5.95421 6.18672 6.30594 6.43676 6.49172 6.50726 6.60396 6.73107 6.85288 7.31590 7.54993 7.78061 8.00920 8.28075 8.73760 9.62008 10.15390 11.19525 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.028766 B = 0.002929 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.139480 B = 9556.890316 C = 9823.457792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C 0.528 3.472 4 O -0.531 6.531 5 N -0.694 5.694 6 C 0.097 3.903 7 H 0.134 0.866 8 C -0.175 4.175 9 H 0.109 0.891 10 C 0.158 3.842 11 N -0.604 5.604 12 C -0.237 4.237 13 H 0.096 0.904 14 C 0.019 3.981 15 N -0.914 5.914 16 Si 0.888 3.112 17 H -0.286 1.286 18 H -0.302 1.302 19 H -0.271 1.271 20 C 0.129 3.871 21 C -0.175 4.175 22 H 0.111 0.889 23 C -0.114 4.114 24 C 0.108 3.892 25 N -0.721 5.721 26 C 0.527 3.473 27 O -0.554 6.554 28 C -0.126 4.126 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.400 0.600 33 H 0.034 0.966 34 H 0.062 0.938 35 H 0.264 0.736 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.400 0.600 43 H 0.108 0.892 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.291 -24.719 11.231 27.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C 0.313 3.687 4 O -0.407 6.407 5 N -0.342 5.342 6 C -0.008 4.008 7 H 0.151 0.849 8 C -0.196 4.196 9 H 0.127 0.873 10 C 0.032 3.968 11 N -0.328 5.328 12 C -0.363 4.363 13 H 0.113 0.887 14 C -0.179 4.179 15 N -0.557 5.557 16 Si 0.719 3.281 17 H -0.214 1.214 18 H -0.230 1.230 19 H -0.196 1.196 20 C 0.003 3.997 21 C -0.197 4.197 22 H 0.129 0.871 23 C -0.152 4.152 24 C -0.016 4.016 25 N -0.373 5.373 26 C 0.314 3.686 27 O -0.433 6.433 28 C -0.166 4.166 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.235 0.765 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.235 0.765 43 H 0.126 0.874 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.648 -24.232 11.206 27.289 hybrid contribution 0.569 -0.881 -0.464 1.147 sum -5.080 -25.114 10.742 27.783 Atomic orbital electron populations 1.21990 0.91637 1.03342 1.03512 1.20916 0.97947 0.92631 0.96936 1.20211 0.80150 0.86525 0.81767 1.90727 1.37122 1.77141 1.35700 1.45368 1.52271 1.11273 1.25306 1.21860 1.00253 0.78906 0.99828 0.84887 1.24394 0.95460 0.95540 1.04201 0.87260 1.21120 0.95702 0.89302 0.90705 1.45535 1.43023 1.08903 1.35364 1.18663 1.02011 0.88546 1.27128 0.88678 1.25013 0.97939 0.96537 0.98440 1.69769 1.31663 1.26691 1.27625 0.86911 0.85112 0.77709 0.78398 1.21358 1.22974 1.19577 1.21679 0.92682 0.85344 0.99959 1.24287 1.02501 0.99862 0.93001 0.87108 1.21762 1.01459 0.94145 0.97839 1.21552 1.01375 0.93571 0.85065 1.45575 1.72090 1.11854 1.07813 1.19909 0.75583 0.90355 0.82738 1.90793 1.52045 1.65050 1.35382 1.21768 1.04778 0.91391 0.98678 0.91009 0.91518 0.91029 0.76543 0.94843 0.91921 0.92594 0.94553 0.90940 0.90037 0.88428 0.89905 0.90947 0.76455 0.87416 0.87410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 7.71 37.16 0.29 -0.56 16 2 C -0.08 -0.59 0.63 -155.44 -0.10 -0.69 16 3 C 0.53 5.81 6.47 -10.99 -0.07 5.74 16 4 O -0.53 -7.89 15.47 5.55 0.09 -7.81 16 5 N -0.69 -7.50 5.37 -53.81 -0.29 -7.79 16 6 C 0.10 1.40 5.97 -67.93 -0.41 0.99 16 7 H 0.13 2.18 7.40 -51.93 -0.38 1.80 16 8 C -0.17 -2.72 7.06 -89.22 -0.63 -3.35 16 9 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 10 C 0.16 3.04 7.04 -2.41 -0.02 3.02 16 11 N -0.60 -14.40 3.19 -168.86 -0.54 -14.94 16 12 C -0.24 -6.65 10.78 -15.06 -0.16 -6.82 16 13 H 0.10 2.82 8.06 -52.48 -0.42 2.40 16 14 C 0.02 0.55 5.49 -17.43 -0.10 0.46 16 15 N -0.91 -28.09 13.97 55.49 0.78 -27.32 16 16 Si 0.89 22.52 24.49 -169.99 -4.16 18.36 16 17 H -0.29 -6.96 6.35 56.52 0.36 -6.60 16 18 H -0.30 -7.77 7.11 56.52 0.40 -7.36 16 19 H -0.27 -6.73 6.33 56.52 0.36 -6.37 16 20 C 0.13 2.75 4.49 -2.41 -0.01 2.74 16 21 C -0.18 -2.88 7.06 -89.22 -0.63 -3.51 16 22 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 23 C -0.11 -0.73 4.33 -26.59 -0.12 -0.84 16 24 C 0.11 0.44 6.41 -4.29 -0.03 0.41 16 25 N -0.72 -4.38 5.25 -61.14 -0.32 -4.70 16 26 C 0.53 4.82 7.14 -11.87 -0.08 4.74 16 27 O -0.55 -7.45 17.78 5.56 0.10 -7.35 16 28 C -0.13 -0.98 4.65 -28.10 -0.13 -1.11 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.36 7.54 -51.93 -0.39 -0.03 16 31 H 0.07 0.36 5.92 -51.93 -0.31 0.06 16 32 H 0.40 3.32 7.99 -40.82 -0.33 2.99 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 36 H 0.04 0.79 6.79 -51.93 -0.35 0.44 16 37 H 0.07 1.66 5.06 -51.93 -0.26 1.40 16 38 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 39 H 0.10 0.65 7.90 -51.93 -0.41 0.24 16 40 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.07 0.21 6.88 -51.93 -0.36 -0.14 16 42 H 0.40 2.04 8.80 -40.82 -0.36 1.68 16 43 H 0.11 0.76 7.94 -51.93 -0.41 0.34 16 44 H 0.11 0.88 8.09 -51.93 -0.42 0.46 16 LS Contribution 344.21 15.07 5.19 5.19 Total: -1.00 -35.35 344.21 -7.94 -43.30 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.59 Total: 1.85 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -2.19 Total: 1.21 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.37 Total: -54.74 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.18 Total: -15.16 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.16 Total: 18.36 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.35 -7.94 -43.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960521183.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.599 kcal (2) G-P(sol) polarization free energy of solvation -35.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds