Wall clock time and date at job start Fri Apr 10 2020 17:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86804 * 120.00015 * 2 1 4 4 H 1.48498 * 109.46963 * 269.99913 * 3 2 1 5 5 H 1.48496 * 109.47133 * 30.00257 * 3 2 1 6 6 H 1.48503 * 109.47277 * 150.00268 * 3 2 1 7 7 C 1.38808 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00625 * 170.64828 * 7 2 1 9 9 N 1.36940 * 119.99902 * 350.64783 * 7 2 1 10 10 C 1.48145 * 127.83953 * 164.84789 * 9 7 2 11 11 C 1.54393 * 104.61673 * 140.41732 * 10 9 7 12 12 H 1.08998 * 118.17969 * 244.20431 * 11 10 9 13 13 C 1.54147 * 104.92900 * 23.84639 * 11 10 9 14 14 H 1.08997 * 121.82283 * 222.20009 * 13 11 10 15 15 C 1.51503 * 127.63396 * 345.19656 * 9 7 2 16 16 C 1.52998 * 118.12067 * 87.19065 * 11 10 9 17 17 H 1.08995 * 117.44472 * 16.11390 * 16 11 10 18 18 N 1.46508 * 117.43827 * 160.85533 * 16 11 10 19 19 C 1.34780 * 119.99583 * 224.00196 * 18 16 11 20 20 O 1.21280 * 120.00259 * 0.02562 * 19 18 16 21 21 C 1.50701 * 119.99538 * 180.02562 * 19 18 16 22 22 N 1.46502 * 109.46649 * 179.97438 * 21 19 18 23 23 C 1.45746 * 117.95077 * 269.73679 * 22 21 19 24 24 C 1.53099 * 110.38939 * 160.74898 * 23 22 21 25 25 C 1.53339 * 108.53142 * 51.11376 * 24 23 22 26 26 C 1.53072 * 108.42610 * 292.31468 * 25 24 23 27 27 C 1.33356 * 117.94380 * 90.00377 * 22 21 19 28 28 O 1.21286 * 118.24727 * 2.19784 * 27 22 21 29 29 H 0.96998 * 120.00247 * 359.97438 * 1 2 3 30 30 H 1.09003 * 110.40647 * 21.63586 * 10 9 7 31 31 H 1.09000 * 110.41090 * 259.20216 * 10 9 7 32 32 H 1.09003 * 111.97508 * 100.88235 * 15 9 7 33 33 H 1.09005 * 110.44538 * 337.34070 * 15 9 7 34 34 H 0.96999 * 120.00422 * 44.00219 * 18 16 11 35 35 H 1.08998 * 109.46910 * 299.99489 * 21 19 18 36 36 H 1.09001 * 109.47115 * 60.00130 * 21 19 18 37 37 H 1.09005 * 109.30170 * 281.24444 * 23 22 21 38 38 H 1.09005 * 109.29826 * 40.61671 * 23 22 21 39 39 H 1.09008 * 109.80388 * 291.32542 * 24 23 22 40 40 H 1.08992 * 109.54572 * 170.75248 * 24 23 22 41 41 H 1.09001 * 109.67731 * 172.57906 * 25 24 23 42 42 H 1.09001 * 109.67366 * 52.04257 * 25 24 23 43 43 H 1.08999 * 109.40202 * 288.77190 * 26 25 24 44 44 H 1.08994 * 109.33184 * 168.98515 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0795 -1.2083 -0.1525 9 7 1.3392 -2.3802 0.1917 10 6 1.8224 -3.7551 -0.0746 11 6 1.2867 -4.5920 1.1072 12 1 2.0090 -5.0455 1.7859 13 6 0.0639 -3.8098 1.6256 14 1 -0.1259 -3.6800 2.6911 15 6 -0.0688 -2.5676 0.7185 16 6 -0.1168 -5.1897 0.9899 17 1 -0.5640 -5.2306 -0.0033 18 7 -0.4525 -6.3042 1.8796 19 6 -1.1048 -7.3798 1.3957 20 8 -1.4135 -7.4252 0.2237 21 6 -1.4506 -8.5259 2.3110 22 7 -2.1522 -9.5633 1.5507 23 6 -3.6059 -9.4906 1.4766 24 6 -4.1222 -10.3216 0.2991 25 6 -3.5094 -11.7245 0.3868 26 6 -2.0049 -11.6124 0.1278 27 6 -1.4209 -10.5180 0.9744 28 8 -0.2199 -10.5015 1.1427 29 1 -0.4850 0.8400 0.0004 30 1 2.9120 -3.7781 -0.0934 31 1 1.4172 -4.1248 -1.0165 32 1 -0.7825 -2.7571 -0.0833 33 1 -0.3750 -1.7005 1.3038 34 1 -0.2052 -6.2681 2.8169 35 1 -0.5362 -8.9412 2.7346 36 1 -2.0936 -8.1677 3.1149 37 1 -4.0335 -9.8699 2.4048 38 1 -3.9083 -8.4519 1.3424 39 1 -3.8294 -9.8527 -0.6404 40 1 -5.2085 -10.3931 0.3517 41 1 -3.9638 -12.3711 -0.3638 42 1 -3.6808 -12.1383 1.3806 43 1 -1.8346 -11.3858 -0.9247 44 1 -1.5244 -12.5584 0.3769 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960753229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:49 Heat of formation + Delta-G solvation = -6.159344 kcal Electronic energy + Delta-G solvation = -25155.458901 eV Core-core repulsion = 21495.646410 eV Total energy + Delta-G solvation = -3659.812491 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.93466 -39.48137 -38.10322 -36.68058 -34.41515 -34.24654 -32.62308 -30.33366 -29.94976 -28.13514 -27.12172 -25.54770 -24.68825 -22.86760 -21.80769 -20.57357 -20.22565 -19.19841 -18.87688 -17.34306 -17.09123 -16.80074 -16.76150 -16.01525 -15.59128 -14.88553 -14.66297 -14.51304 -14.39052 -13.99445 -13.68997 -13.51737 -13.41043 -13.15101 -12.74033 -12.40644 -12.17086 -12.01893 -11.62690 -11.47564 -11.45805 -11.33563 -11.31599 -10.99529 -10.81914 -10.42302 -10.20677 -10.15350 -10.05306 -9.89016 -9.67233 -9.22514 -8.90062 -8.73626 -8.32525 -6.86639 -5.78235 -3.10996 2.35729 2.62220 2.65799 3.27958 3.39656 3.44701 3.46624 4.24109 4.33035 4.36570 4.39854 4.45953 4.47956 4.69961 4.85216 4.99239 5.09705 5.12221 5.16884 5.23538 5.36588 5.36753 5.40172 5.46525 5.51510 5.57088 5.57455 5.80494 5.83900 5.92302 6.00183 6.15393 6.23481 6.55122 6.71566 6.80876 6.91587 7.18202 7.30921 7.51523 7.56726 7.70519 7.95167 8.16041 8.27875 9.07807 9.74119 10.51068 11.36929 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.037349 B = 0.002472 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.507719 B =11325.255803 C =11574.895451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.158 3.842 11 C -0.182 4.182 12 H 0.103 0.897 13 C -0.178 4.178 14 H 0.102 0.898 15 C 0.186 3.814 16 C 0.096 3.904 17 H 0.130 0.870 18 N -0.696 5.696 19 C 0.500 3.500 20 O -0.531 6.531 21 C 0.088 3.912 22 N -0.585 5.585 23 C 0.115 3.885 24 C -0.137 4.137 25 C -0.123 4.123 26 C -0.132 4.132 27 C 0.523 3.477 28 O -0.553 6.553 29 H 0.254 0.746 30 H 0.052 0.948 31 H 0.026 0.974 32 H 0.031 0.969 33 H 0.092 0.908 34 H 0.399 0.601 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.102 0.898 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.044 -22.751 6.854 25.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.323 5.323 10 C 0.031 3.969 11 C -0.203 4.203 12 H 0.121 0.879 13 C -0.199 4.199 14 H 0.120 0.880 15 C 0.061 3.939 16 C -0.010 4.010 17 H 0.148 0.852 18 N -0.346 5.346 19 C 0.285 3.715 20 O -0.407 6.407 21 C -0.039 4.039 22 N -0.317 5.317 23 C -0.007 4.007 24 C -0.174 4.174 25 C -0.161 4.161 26 C -0.172 4.172 27 C 0.312 3.688 28 O -0.431 6.431 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.110 0.890 34 H 0.233 0.767 35 H 0.135 0.865 36 H 0.125 0.875 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.120 0.880 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.684 -22.536 6.039 25.261 hybrid contribution 0.539 1.001 0.558 1.267 sum -9.145 -21.534 6.597 24.308 Atomic orbital electron populations 1.69882 1.05047 1.25361 1.56108 1.24867 0.95642 0.97904 1.02027 0.86122 0.78698 0.83296 0.77645 1.21486 1.21587 1.20621 1.19012 0.90826 0.82432 1.42925 0.90541 1.45996 1.12431 0.99755 1.74068 1.21068 0.97151 0.85830 0.92850 1.24353 0.90544 1.02348 1.03102 0.87887 1.24571 1.02461 0.92436 1.00405 0.88042 1.21637 0.86465 0.92261 0.93548 1.21853 0.98641 0.84925 0.95585 0.85245 1.45358 1.58417 1.18126 1.12686 1.21035 0.77774 0.83274 0.89407 1.90697 1.53133 1.79650 1.17196 1.21349 1.00800 0.87960 0.93817 1.46870 1.07203 1.25262 1.52409 1.21477 0.78730 1.01691 0.98836 1.21910 1.01123 0.95385 0.99014 1.21669 0.94215 0.97353 1.02844 1.21641 0.96688 0.97841 1.01024 1.20168 0.86831 0.82484 0.79342 1.90726 1.15184 1.76332 1.60825 0.93594 0.92975 0.95658 0.95095 0.89017 0.76745 0.86490 0.87454 0.91462 0.90385 0.90338 0.89683 0.90459 0.91137 0.88028 0.88239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.98 10.84 55.49 0.60 -26.37 16 2 C -0.01 -0.22 5.41 -17.44 -0.09 -0.31 16 3 Si 0.91 22.07 29.56 -169.99 -5.03 17.04 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.22 -6.31 10.36 -15.06 -0.16 -6.46 16 8 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 9 N -0.60 -15.58 3.44 -165.99 -0.57 -16.15 16 10 C 0.16 3.45 7.05 -2.41 -0.02 3.44 16 11 C -0.18 -3.36 7.06 -89.29 -0.63 -3.99 16 12 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 13 C -0.18 -3.35 6.96 -89.29 -0.62 -3.97 16 14 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 15 C 0.19 4.48 5.90 -0.49 0.00 4.48 16 16 C 0.10 1.66 5.97 -67.93 -0.41 1.25 16 17 H 0.13 2.57 7.40 -51.93 -0.38 2.19 16 18 N -0.70 -9.45 5.56 -53.80 -0.30 -9.75 16 19 C 0.50 7.13 7.88 -10.98 -0.09 7.04 16 20 O -0.53 -9.80 15.99 5.56 0.09 -9.71 16 21 C 0.09 0.89 5.70 -5.19 -0.03 0.86 16 22 N -0.59 -6.10 2.30 -176.22 -0.41 -6.51 16 23 C 0.12 0.84 6.32 -4.40 -0.03 0.81 16 24 C -0.14 -0.84 6.03 -26.50 -0.16 -1.00 16 25 C -0.12 -0.68 6.03 -26.52 -0.16 -0.84 16 26 C -0.13 -1.10 6.03 -28.10 -0.17 -1.27 16 27 C 0.52 6.40 7.44 -11.87 -0.09 6.31 16 28 O -0.55 -9.02 16.18 5.55 0.09 -8.93 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.09 2.43 6.58 -51.93 -0.34 2.09 16 34 H 0.40 4.10 8.83 -40.82 -0.36 3.74 16 35 H 0.12 1.21 7.14 -51.93 -0.37 0.83 16 36 H 0.11 0.68 8.01 -51.93 -0.42 0.27 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 39 H 0.08 0.62 8.12 -51.92 -0.42 0.20 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.34 8.12 -51.93 -0.42 -0.09 16 43 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -36.14 359.24 -9.67 -45.80 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.91 Total: 2.81 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -2.65 Total: 6.35 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.68 Total: -58.78 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.18 Total: -18.64 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.14 -9.67 -45.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960753229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.645 kcal (2) G-P(sol) polarization free energy of solvation -36.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds