Wall clock time and date at job start Fri Apr 10 2020 17:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86804 * 120.00015 * 2 1 4 4 H 1.48498 * 109.46963 * 269.99913 * 3 2 1 5 5 H 1.48496 * 109.47133 * 30.00257 * 3 2 1 6 6 H 1.48503 * 109.47277 * 150.00268 * 3 2 1 7 7 C 1.38808 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00625 * 170.64828 * 7 2 1 9 9 N 1.36940 * 119.99902 * 350.64783 * 7 2 1 10 10 C 1.48145 * 127.83953 * 164.84789 * 9 7 2 11 11 C 1.54393 * 104.61673 * 140.41732 * 10 9 7 12 12 H 1.08998 * 118.17969 * 244.20431 * 11 10 9 13 13 C 1.54147 * 104.92900 * 23.84639 * 11 10 9 14 14 H 1.08997 * 121.82283 * 222.20009 * 13 11 10 15 15 C 1.51503 * 127.63396 * 345.19656 * 9 7 2 16 16 C 1.52998 * 118.12067 * 87.19065 * 11 10 9 17 17 H 1.08995 * 117.44472 * 16.11390 * 16 11 10 18 18 N 1.46508 * 117.43827 * 160.85533 * 16 11 10 19 19 C 1.34780 * 119.99583 * 224.00196 * 18 16 11 20 20 O 1.21280 * 120.00259 * 0.02562 * 19 18 16 21 21 C 1.50701 * 119.99538 * 180.02562 * 19 18 16 22 22 N 1.46502 * 109.46649 * 179.97438 * 21 19 18 23 23 C 1.45746 * 117.95077 * 269.73679 * 22 21 19 24 24 C 1.53099 * 110.38939 * 160.74898 * 23 22 21 25 25 C 1.53339 * 108.53142 * 51.11376 * 24 23 22 26 26 C 1.53072 * 108.42610 * 292.31468 * 25 24 23 27 27 C 1.33356 * 117.94380 * 90.00377 * 22 21 19 28 28 O 1.21286 * 118.24727 * 2.19784 * 27 22 21 29 29 H 0.96998 * 120.00247 * 359.97438 * 1 2 3 30 30 H 1.09003 * 110.40647 * 21.63586 * 10 9 7 31 31 H 1.09000 * 110.41090 * 259.20216 * 10 9 7 32 32 H 1.09003 * 111.97508 * 100.88235 * 15 9 7 33 33 H 1.09005 * 110.44538 * 337.34070 * 15 9 7 34 34 H 0.96999 * 120.00422 * 44.00219 * 18 16 11 35 35 H 1.08998 * 109.46910 * 299.99489 * 21 19 18 36 36 H 1.09001 * 109.47115 * 60.00130 * 21 19 18 37 37 H 1.09005 * 109.30170 * 281.24444 * 23 22 21 38 38 H 1.09005 * 109.29826 * 40.61671 * 23 22 21 39 39 H 1.09008 * 109.80388 * 291.32542 * 24 23 22 40 40 H 1.08992 * 109.54572 * 170.75248 * 24 23 22 41 41 H 1.09001 * 109.67731 * 172.57906 * 25 24 23 42 42 H 1.09001 * 109.67366 * 52.04257 * 25 24 23 43 43 H 1.08999 * 109.40202 * 288.77190 * 26 25 24 44 44 H 1.08994 * 109.33184 * 168.98515 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0795 -1.2083 -0.1525 9 7 1.3392 -2.3802 0.1917 10 6 1.8224 -3.7551 -0.0746 11 6 1.2867 -4.5920 1.1072 12 1 2.0090 -5.0455 1.7859 13 6 0.0639 -3.8098 1.6256 14 1 -0.1259 -3.6800 2.6911 15 6 -0.0688 -2.5676 0.7185 16 6 -0.1168 -5.1897 0.9899 17 1 -0.5640 -5.2306 -0.0033 18 7 -0.4525 -6.3042 1.8796 19 6 -1.1048 -7.3798 1.3957 20 8 -1.4135 -7.4252 0.2237 21 6 -1.4506 -8.5259 2.3110 22 7 -2.1522 -9.5633 1.5507 23 6 -3.6059 -9.4906 1.4766 24 6 -4.1222 -10.3216 0.2991 25 6 -3.5094 -11.7245 0.3868 26 6 -2.0049 -11.6124 0.1278 27 6 -1.4209 -10.5180 0.9744 28 8 -0.2199 -10.5015 1.1427 29 1 -0.4850 0.8400 0.0004 30 1 2.9120 -3.7781 -0.0934 31 1 1.4172 -4.1248 -1.0165 32 1 -0.7825 -2.7571 -0.0833 33 1 -0.3750 -1.7005 1.3038 34 1 -0.2052 -6.2681 2.8169 35 1 -0.5362 -8.9412 2.7346 36 1 -2.0936 -8.1677 3.1149 37 1 -4.0335 -9.8699 2.4048 38 1 -3.9083 -8.4519 1.3424 39 1 -3.8294 -9.8527 -0.6404 40 1 -5.2085 -10.3931 0.3517 41 1 -3.9638 -12.3711 -0.3638 42 1 -3.6808 -12.1383 1.3806 43 1 -1.8346 -11.3858 -0.9247 44 1 -1.5244 -12.5584 0.3769 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960753229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:48 Heat of formation + Delta-G solvation = -31.402391 kcal Electronic energy + Delta-G solvation = -25156.553522 eV Core-core repulsion = 21495.646410 eV Total energy + Delta-G solvation = -3660.907111 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.83780 -40.79863 -39.55312 -37.48073 -36.01160 -35.02256 -34.33333 -32.14170 -30.63716 -29.14800 -28.91576 -27.41902 -25.34654 -23.93328 -23.12285 -22.00317 -21.62401 -20.83917 -19.58194 -18.88508 -18.39964 -18.04791 -17.56923 -17.24341 -16.70114 -16.46770 -15.97161 -15.59594 -15.30420 -15.13232 -14.88714 -14.69548 -14.59215 -14.30519 -14.13384 -13.77105 -13.40345 -13.33900 -13.04779 -12.91565 -12.73107 -12.70216 -12.22738 -12.16703 -12.06149 -11.87202 -11.85354 -11.82127 -11.66189 -11.23573 -10.88267 -10.77242 -10.72391 -9.79420 -9.73534 -8.95526 -7.92774 -5.28492 1.40539 1.46381 1.47760 1.50172 1.57525 1.85217 2.21099 2.48018 2.82559 3.27837 3.49435 3.59438 3.68757 3.80497 3.85364 3.89417 3.91927 3.94184 4.10026 4.20802 4.33792 4.36799 4.48457 4.52742 4.56705 4.62914 4.77686 4.85963 4.87732 4.94057 4.94550 5.05511 5.14808 5.23806 5.29084 5.37338 5.39139 5.42444 5.50548 5.61999 6.10629 6.38803 6.47986 6.94243 7.07701 7.18948 7.63141 8.43012 9.21883 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.037349 B = 0.002472 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.507719 B =11325.255803 C =11574.895451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.063 4.063 3 Si 0.982 3.018 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.241 4.241 8 H 0.081 0.919 9 N -0.621 5.621 10 C 0.150 3.850 11 C -0.171 4.171 12 H 0.133 0.867 13 C -0.169 4.169 14 H 0.131 0.869 15 C 0.187 3.813 16 C 0.116 3.884 17 H 0.100 0.900 18 N -0.681 5.681 19 C 0.497 3.503 20 O -0.579 6.579 21 C 0.092 3.908 22 N -0.586 5.586 23 C 0.107 3.893 24 C -0.136 4.136 25 C -0.114 4.114 26 C -0.133 4.133 27 C 0.510 3.490 28 O -0.604 6.604 29 H 0.251 0.749 30 H 0.061 0.939 31 H 0.013 0.987 32 H 0.003 0.997 33 H 0.063 0.937 34 H 0.420 0.580 35 H 0.119 0.881 36 H 0.155 0.845 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.601 -24.369 8.948 28.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.810 3.190 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.193 1.193 7 C -0.370 4.370 8 H 0.099 0.901 9 N -0.347 5.347 10 C 0.025 3.975 11 C -0.193 4.193 12 H 0.151 0.849 13 C -0.190 4.190 14 H 0.148 0.852 15 C 0.063 3.937 16 C 0.008 3.992 17 H 0.118 0.882 18 N -0.332 5.332 19 C 0.284 3.716 20 O -0.458 6.458 21 C -0.035 4.035 22 N -0.316 5.316 23 C -0.014 4.014 24 C -0.174 4.174 25 C -0.151 4.151 26 C -0.172 4.172 27 C 0.301 3.699 28 O -0.486 6.486 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.031 0.969 32 H 0.021 0.979 33 H 0.082 0.918 34 H 0.258 0.742 35 H 0.137 0.863 36 H 0.173 0.827 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.130 0.870 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.262 -24.186 8.175 27.515 hybrid contribution 0.676 1.476 -0.178 1.633 sum -9.586 -22.710 7.996 25.915 Atomic orbital electron populations 1.70077 1.06521 1.25811 1.57238 1.25736 0.96540 1.01264 1.02153 0.85040 0.77745 0.78755 0.77498 1.21318 1.21678 1.19285 1.19405 0.91373 0.83638 1.42550 0.90135 1.46317 1.13026 1.00731 1.74593 1.21180 0.97784 0.84700 0.93869 1.24260 0.91217 1.02012 1.01777 0.84898 1.24262 1.03227 0.90835 1.00700 0.85167 1.21395 0.85428 0.93702 0.93200 1.21351 0.97475 0.85365 0.94961 0.88181 1.45166 1.58042 1.16815 1.13215 1.21900 0.76524 0.83866 0.89352 1.90687 1.54971 1.80603 1.19546 1.21502 1.02160 0.86227 0.93614 1.47096 1.08545 1.24428 1.51526 1.21780 0.76865 1.01803 1.00957 1.21937 1.02754 0.95371 0.97347 1.21660 0.91773 0.97288 1.04377 1.21701 0.98891 0.96861 0.99754 1.20909 0.86419 0.83425 0.79174 1.90689 1.17361 1.77815 1.62780 0.94035 0.92032 0.96928 0.97866 0.91815 0.74244 0.86286 0.82747 0.88021 0.91152 0.92887 0.87007 0.88572 0.89548 0.88700 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.48 10.84 21.65 0.23 -57.24 16 2 C -0.06 -3.64 5.41 84.86 0.46 -3.18 16 3 Si 0.98 45.87 29.56 68.60 2.03 47.90 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.24 -13.79 10.36 84.03 0.87 -12.92 16 8 H 0.08 4.41 7.85 -2.91 -0.02 4.39 16 9 N -0.62 -33.09 3.44 -679.07 -2.34 -35.43 16 10 C 0.15 6.65 7.05 86.54 0.61 7.26 16 11 C -0.17 -6.12 7.06 -9.93 -0.07 -6.19 16 12 H 0.13 4.01 8.14 -2.39 -0.02 3.99 16 13 C -0.17 -6.26 6.96 -9.94 -0.07 -6.33 16 14 H 0.13 4.10 8.14 -2.39 -0.02 4.08 16 15 C 0.19 9.35 5.90 85.86 0.51 9.86 16 16 C 0.12 3.94 5.97 44.99 0.27 4.21 16 17 H 0.10 4.10 7.40 -2.39 -0.02 4.09 16 18 N -0.68 -17.13 5.56 -442.52 -2.46 -19.60 16 19 C 0.50 13.55 7.88 87.66 0.69 14.24 16 20 O -0.58 -21.60 15.99 -3.03 -0.05 -21.65 16 21 C 0.09 1.64 5.70 85.63 0.49 2.13 16 22 N -0.59 -11.18 2.30 -830.63 -1.91 -13.09 16 23 C 0.11 1.28 6.32 86.55 0.55 1.83 16 24 C -0.14 -1.38 6.03 30.74 0.19 -1.19 16 25 C -0.11 -0.94 6.03 30.73 0.19 -0.76 16 26 C -0.13 -2.06 6.03 29.71 0.18 -1.88 16 27 C 0.51 12.14 7.44 87.71 0.65 12.80 16 28 O -0.60 -19.84 16.18 -3.05 -0.05 -19.89 16 29 H 0.25 14.65 8.31 -92.71 -0.77 13.87 16 30 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.06 3.52 6.58 -2.38 -0.02 3.50 16 34 H 0.42 7.18 8.83 -92.71 -0.82 6.37 16 35 H 0.12 2.19 7.14 -2.39 -0.02 2.17 16 36 H 0.16 1.29 8.01 -2.39 -0.02 1.28 16 37 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.07 0.97 8.10 -2.38 -0.02 0.95 16 39 H 0.05 0.81 8.12 -2.38 -0.02 0.80 16 40 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.09 0.49 8.12 -2.39 -0.02 0.48 16 43 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -82.94 359.24 1.14 -81.79 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.19 Total: 17.34 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: 5.51 Total: 19.87 kcal Atomic # 7 Polarization: -118.88 SS G_CDS: -6.48 Total: -125.36 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -0.10 Total: -41.54 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -82.94 1.14 -81.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960753229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.388 kcal (2) G-P(sol) polarization free energy of solvation -82.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds