Wall clock time and date at job start Fri Apr 10 2020 17:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.60407 * 2 1 4 4 O 1.21285 * 119.99837 * 114.44964 * 3 2 1 5 5 N 1.34773 * 120.00127 * 294.45917 * 3 2 1 6 6 C 1.46498 * 119.99978 * 179.97438 * 5 3 2 7 7 H 1.09000 * 115.49587 * 350.38178 * 6 5 3 8 8 C 1.53001 * 117.44105 * 204.99310 * 6 5 3 9 9 H 1.08993 * 120.26691 * 3.83696 * 8 6 5 10 10 C 1.54390 * 118.11802 * 160.81094 * 8 6 5 11 11 N 1.48142 * 104.62257 * 87.19554 * 10 8 6 12 12 C 1.36938 * 127.84381 * 140.41130 * 11 10 8 13 13 H 1.08002 * 119.99581 * 342.99775 * 12 11 10 14 14 C 1.38811 * 120.00030 * 163.00598 * 12 11 10 15 15 N 1.31617 * 120.00085 * 351.60977 * 14 12 11 16 16 Si 1.86798 * 119.99815 * 171.61885 * 14 12 11 17 17 H 1.48501 * 109.47250 * 94.97581 * 16 14 12 18 18 H 1.48506 * 109.46987 * 214.97300 * 16 14 12 19 19 H 1.48497 * 109.47433 * 334.97154 * 16 14 12 20 20 C 1.48152 * 104.32086 * 320.67591 * 11 10 8 21 21 C 1.53010 * 117.44249 * 135.75477 * 6 5 3 22 22 H 1.09000 * 119.53779 * 355.88754 * 21 6 5 23 23 C 1.53346 * 109.60523 * 239.67918 * 2 1 3 24 24 C 1.53065 * 108.42943 * 172.54716 * 23 2 1 25 25 C 1.50182 * 109.88953 * 48.90082 * 24 23 2 26 26 O 1.21280 * 118.24663 * 162.44031 * 25 24 23 27 27 N 1.33353 * 123.50600 * 342.41520 * 25 24 23 28 28 C 1.45747 * 124.10940 * 2.22670 * 27 25 24 29 29 H 1.08998 * 109.46777 * 59.99479 * 1 2 3 30 30 H 1.08997 * 109.47011 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46786 * 299.99659 * 1 2 3 32 32 H 0.97003 * 120.00297 * 359.97438 * 5 3 2 33 33 H 1.09000 * 110.40950 * 328.40289 * 10 8 6 34 34 H 1.09005 * 110.50430 * 206.02680 * 10 8 6 35 35 H 0.97001 * 120.00264 * 180.02562 * 15 14 12 36 36 H 1.08995 * 110.40997 * 158.10649 * 20 11 10 37 37 H 1.09002 * 110.40243 * 280.54076 * 20 11 10 38 38 H 1.09001 * 109.67388 * 292.28454 * 23 2 1 39 39 H 1.08998 * 109.67083 * 52.81073 * 23 2 1 40 40 H 1.08998 * 109.40350 * 169.02450 * 24 23 2 41 41 H 1.08997 * 109.40167 * 288.77501 * 24 23 2 42 42 H 0.97000 * 117.94340 * 182.22355 * 27 25 24 43 43 H 1.09004 * 109.30439 * 220.60944 * 28 27 25 44 44 H 1.09008 * 109.30535 * 101.23367 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0356 1.4197 0.0000 4 8 2.6486 1.8450 0.9562 5 7 1.8065 2.2166 -1.0624 6 6 2.2975 3.5969 -1.0621 7 1 2.6920 3.9543 -0.1110 8 6 1.5620 4.6071 -1.9450 9 1 0.6701 4.3085 -2.4957 10 6 1.7448 6.1093 -1.6392 11 7 2.9553 6.5009 -2.3980 12 6 3.1739 7.6619 -3.0904 13 1 2.3413 8.2947 -3.3600 14 6 4.4656 8.0253 -3.4459 15 7 5.4922 7.3466 -2.9794 16 14 4.7466 9.4778 -4.5863 17 1 5.0044 10.6978 -3.7798 18 1 5.9177 9.2038 -5.4575 19 1 3.5415 9.6866 -5.4284 20 6 3.8735 5.3485 -2.2433 21 6 2.9673 4.1073 -2.3397 22 1 3.1206 3.4248 -3.1756 23 6 2.0445 -0.7293 -1.2470 24 6 3.5633 -0.5529 -1.3185 25 6 4.1789 -0.8805 0.0116 26 8 5.3694 -1.1083 0.0526 27 7 3.4866 -0.9339 1.1501 28 6 2.0465 -0.7286 1.2413 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.3164 1.8764 -1.8273 33 1 1.8990 6.2639 -0.5713 34 1 0.8802 6.6770 -1.9836 35 1 6.3948 7.6008 -3.2275 36 1 4.6127 5.3413 -3.0442 37 1 4.3653 5.3824 -1.2711 38 1 1.8010 -1.7895 -1.1786 39 1 1.5832 -0.3030 -2.1378 40 1 3.9698 -1.2191 -2.0794 41 1 3.7960 0.4791 -1.5808 42 1 3.9719 -1.1211 1.9688 43 1 1.8227 -0.1341 2.1272 44 1 1.5493 -1.6950 1.3247 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961562916.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:08 Heat of formation + Delta-G solvation = -16.757461 kcal Electronic energy + Delta-G solvation = -26043.206403 eV Core-core repulsion = 22382.934344 eV Total energy + Delta-G solvation = -3660.272060 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.32377 -39.45021 -38.46790 -36.53367 -34.72108 -33.74027 -32.43375 -31.66989 -30.21096 -27.20295 -26.63011 -25.82961 -24.64037 -23.81679 -21.81961 -20.77167 -20.46562 -19.32188 -18.86648 -17.38283 -16.91865 -16.69227 -16.41943 -16.14464 -15.83128 -14.96372 -14.79064 -14.47542 -14.29298 -13.75910 -13.63006 -13.36242 -13.29638 -12.98776 -12.81592 -12.75512 -12.56107 -12.25787 -11.74573 -11.62177 -11.54031 -11.51414 -11.17911 -11.00005 -10.84731 -10.45185 -10.23512 -10.18609 -9.89151 -9.80214 -9.74795 -9.24355 -9.18348 -8.76676 -8.38858 -6.86943 -5.81149 -3.16645 2.48818 2.57942 2.94624 3.15372 3.37481 3.42847 3.45145 3.98182 4.10937 4.19521 4.30913 4.40908 4.46202 4.62449 4.89836 4.97623 5.09181 5.13652 5.18957 5.22275 5.30427 5.32959 5.35485 5.46050 5.50952 5.54346 5.65551 5.65664 5.80220 5.85353 6.09686 6.20198 6.47308 6.63185 6.65182 6.74423 6.85230 7.18968 7.33848 7.46409 7.52468 7.70077 8.11459 8.16036 8.19046 9.09105 9.72040 10.49227 11.33387 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.023692 B = 0.003241 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.573244 B = 8636.704696 C = 9275.101287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 C 0.523 3.477 4 O -0.527 6.527 5 N -0.694 5.694 6 C 0.098 3.902 7 H 0.131 0.869 8 C -0.182 4.182 9 H 0.103 0.897 10 C 0.155 3.845 11 N -0.592 5.592 12 C -0.231 4.231 13 H 0.076 0.924 14 C -0.003 4.003 15 N -0.913 5.913 16 Si 0.913 3.087 17 H -0.287 1.287 18 H -0.289 1.289 19 H -0.280 1.280 20 C 0.186 3.814 21 C -0.181 4.181 22 H 0.102 0.898 23 C -0.112 4.112 24 C -0.145 4.145 25 C 0.523 3.477 26 O -0.558 6.558 27 N -0.711 5.711 28 C 0.135 3.865 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.397 0.603 33 H 0.026 0.974 34 H 0.052 0.948 35 H 0.255 0.745 36 H 0.088 0.912 37 H 0.026 0.974 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.401 0.599 43 H 0.088 0.912 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.327 -19.602 4.532 24.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 C 0.308 3.692 4 O -0.402 6.402 5 N -0.343 5.343 6 C -0.008 4.008 7 H 0.149 0.851 8 C -0.203 4.203 9 H 0.121 0.879 10 C 0.029 3.971 11 N -0.316 5.316 12 C -0.359 4.359 13 H 0.094 0.906 14 C -0.201 4.201 15 N -0.558 5.558 16 Si 0.742 3.258 17 H -0.214 1.214 18 H -0.215 1.215 19 H -0.205 1.205 20 C 0.060 3.940 21 C -0.202 4.202 22 H 0.120 0.880 23 C -0.149 4.149 24 C -0.184 4.184 25 C 0.310 3.690 26 O -0.436 6.436 27 N -0.362 5.362 28 C 0.009 3.991 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.232 0.768 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.044 0.956 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.237 0.763 43 H 0.106 0.894 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.184 -19.171 4.924 23.242 hybrid contribution -0.030 0.541 -0.746 0.922 sum -12.214 -18.630 4.178 22.665 Atomic orbital electron populations 1.21773 0.90733 1.03434 1.03569 1.21228 0.98354 0.93105 0.97593 1.20219 0.79550 0.86771 0.82688 1.90747 1.39929 1.75243 1.34280 1.45364 1.57152 1.12231 1.19528 1.21859 1.01472 0.79961 0.97509 0.85134 1.24310 0.96324 0.95749 1.03951 0.87860 1.21117 0.91658 0.89394 0.94971 1.45160 1.12972 1.15843 1.57597 1.18975 0.92204 0.97108 1.27624 0.90589 1.24936 0.95398 0.98927 1.00799 1.69906 0.97849 1.41674 1.46393 0.86107 0.77490 0.81920 0.80239 1.21445 1.21540 1.20493 1.20932 0.91278 0.81150 1.00642 1.24651 0.96999 1.01244 0.97312 0.88043 1.21789 0.94835 1.01596 0.96726 1.21747 0.95671 1.05552 0.95465 1.20035 0.86847 0.75936 0.86229 1.90764 1.15683 1.50071 1.87124 1.45250 1.08844 1.72125 1.10016 1.21212 0.80602 0.99502 0.97741 0.91201 0.90816 0.91288 0.76833 0.95602 0.92986 0.93470 0.89385 0.95581 0.89679 0.89779 0.87541 0.87734 0.76330 0.89420 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 8.45 37.16 0.31 -0.36 16 2 C -0.10 -0.75 0.65 -155.52 -0.10 -0.86 16 3 C 0.52 6.36 4.73 -10.99 -0.05 6.31 16 4 O -0.53 -8.77 15.15 5.55 0.08 -8.69 16 5 N -0.69 -8.18 5.31 -53.80 -0.29 -8.47 16 6 C 0.10 1.56 5.98 -67.93 -0.41 1.16 16 7 H 0.13 2.45 7.40 -51.93 -0.38 2.07 16 8 C -0.18 -3.06 7.06 -89.22 -0.63 -3.69 16 9 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 10 C 0.16 3.20 7.04 -2.41 -0.02 3.19 16 11 N -0.59 -15.10 3.38 -169.11 -0.57 -15.67 16 12 C -0.23 -6.41 10.35 -15.06 -0.16 -6.56 16 13 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 14 C 0.00 -0.08 5.40 -17.43 -0.09 -0.18 16 15 N -0.91 -26.92 10.93 55.49 0.61 -26.32 16 16 Si 0.91 21.86 29.56 -169.99 -5.03 16.84 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C 0.19 4.49 5.65 -2.62 -0.01 4.48 16 21 C -0.18 -3.33 7.04 -89.43 -0.63 -3.96 16 22 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 23 C -0.11 -0.72 4.73 -26.52 -0.13 -0.84 16 24 C -0.14 -1.46 5.50 -28.10 -0.15 -1.62 16 25 C 0.52 6.95 7.44 -11.87 -0.09 6.86 16 26 O -0.56 -9.92 17.78 5.56 0.10 -9.82 16 27 N -0.71 -7.51 5.11 -61.39 -0.31 -7.82 16 28 C 0.13 1.03 5.42 -4.49 -0.02 1.00 16 29 H 0.07 0.30 7.98 -51.93 -0.41 -0.11 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.40 3.49 7.95 -40.82 -0.32 3.16 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.09 2.37 6.62 -51.93 -0.34 2.03 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.40 8.13 -51.93 -0.42 -0.02 16 39 H 0.08 0.40 7.56 -51.93 -0.39 0.01 16 40 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.10 1.25 7.36 -51.93 -0.38 0.87 16 42 H 0.40 4.02 8.80 -40.82 -0.36 3.66 16 43 H 0.09 0.71 7.72 -51.93 -0.40 0.31 16 44 H 0.07 0.35 8.12 -51.92 -0.42 -0.07 16 LS Contribution 352.91 15.07 5.32 5.32 Total: -1.00 -35.74 352.91 -9.04 -44.78 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.77 Total: 4.93 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -2.18 Total: 4.93 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.56 Total: -58.28 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.18 Total: -18.51 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.74 -9.04 -44.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961562916.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.022 kcal (2) G-P(sol) polarization free energy of solvation -35.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds