Wall clock time and date at job start Fri Apr 10 2020 17:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.77950 * 2 1 4 4 C 1.55157 * 110.71978 * 236.76318 * 2 1 3 5 5 C 1.54908 * 101.58279 * 206.12900 * 4 2 1 6 6 N 1.47427 * 104.83126 * 37.00993 * 5 4 2 7 7 C 1.34777 * 125.65040 * 155.90755 * 6 5 4 8 8 O 1.21350 * 120.00111 * 179.97438 * 7 6 5 9 9 C 1.49453 * 119.99635 * 359.97023 * 7 6 5 10 10 O 1.21347 * 120.00162 * 0.02562 * 9 7 6 11 11 N 1.34777 * 119.99635 * 179.97438 * 9 7 6 12 12 C 1.46505 * 119.99878 * 180.02562 * 11 9 7 13 13 H 1.08991 * 115.51597 * 350.41746 * 12 11 9 14 14 C 1.53000 * 117.44097 * 205.00077 * 12 11 9 15 15 H 1.09003 * 119.53859 * 4.12171 * 14 12 11 16 16 C 1.54388 * 118.11987 * 160.80955 * 14 12 11 17 17 N 1.48144 * 104.61944 * 87.19181 * 16 14 12 18 18 C 1.36933 * 127.83783 * 140.38807 * 17 16 14 19 19 H 1.08004 * 119.99887 * 195.57447 * 18 17 16 20 20 C 1.38814 * 120.00271 * 15.58140 * 18 17 16 21 21 N 1.31618 * 119.99788 * 8.99710 * 20 18 17 22 22 Si 1.86796 * 119.99996 * 189.00202 * 20 18 17 23 23 H 1.48501 * 109.47000 * 94.44418 * 22 20 18 24 24 H 1.48497 * 109.47116 * 214.43747 * 22 20 18 25 25 H 1.48500 * 109.47227 * 334.44549 * 22 20 18 26 26 C 1.48152 * 104.32222 * 320.41394 * 17 16 14 27 27 C 1.53002 * 117.44082 * 135.76246 * 12 11 9 28 28 H 1.08997 * 119.54161 * 355.88082 * 27 12 11 29 29 C 1.47022 * 108.69957 * 335.86928 * 6 5 4 30 30 H 1.09002 * 109.46639 * 183.23906 * 1 2 3 31 31 H 1.09000 * 109.47348 * 303.23594 * 1 2 3 32 32 H 1.08999 * 109.47354 * 63.23892 * 1 2 3 33 33 H 1.08999 * 111.00545 * 324.20541 * 4 2 1 34 34 H 1.09006 * 111.00434 * 88.01915 * 4 2 1 35 35 H 1.09003 * 110.36982 * 155.84600 * 5 4 2 36 36 H 1.09003 * 110.36893 * 278.17177 * 5 4 2 37 37 H 0.96998 * 120.00227 * 0.02562 * 11 9 7 38 38 H 1.09003 * 110.40476 * 205.97608 * 16 14 12 39 39 H 1.09004 * 110.40623 * 328.40482 * 16 14 12 40 40 H 0.97002 * 119.99797 * 179.97438 * 21 20 18 41 41 H 1.08994 * 110.40672 * 280.80399 * 26 17 16 42 42 H 1.08998 * 110.50527 * 158.41734 * 26 17 16 43 43 H 1.08997 * 109.88279 * 241.63980 * 29 6 5 44 44 H 1.09005 * 109.87837 * 120.48134 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0789 -0.7954 -1.2138 5 6 3.4633 -1.2496 -0.6877 6 7 3.2446 -1.5506 0.7389 7 6 3.9925 -2.3834 1.4896 8 8 3.7193 -2.5563 2.6593 9 6 5.1581 -3.0941 0.8815 10 8 5.4314 -2.9210 -0.2881 11 7 5.9063 -3.9265 1.6323 12 6 7.0493 -4.6228 1.0364 13 1 7.1331 -4.5452 -0.0476 14 6 7.4920 -5.9355 1.6857 15 1 6.9157 -6.3460 2.5150 16 6 8.3620 -6.9019 0.8535 17 7 9.7530 -6.4496 1.0888 18 6 10.8692 -7.2229 1.2650 19 1 11.7691 -6.7871 1.6734 20 6 10.8443 -8.5669 0.9185 21 7 9.8158 -9.0579 0.2602 22 14 12.2706 -9.6787 1.3867 23 1 11.9679 -10.3572 2.6725 24 1 12.4733 -10.6973 0.3253 25 1 13.5043 -8.8654 1.5346 26 6 9.6621 -4.9709 1.0909 27 6 8.3492 -4.6623 1.8423 28 1 8.4116 -4.1243 2.7882 29 6 2.0761 -0.7911 1.2072 30 1 -0.3633 -1.0261 0.0581 31 1 -0.3634 0.5632 0.8595 32 1 -0.3634 0.4627 -0.9176 33 1 1.4452 -1.6536 -1.4375 34 1 2.1842 -0.1519 -2.0873 35 1 3.7961 -2.1425 -1.2170 36 1 4.1931 -0.4477 -0.7986 37 1 5.6880 -4.0647 2.5673 38 1 8.2314 -7.9265 1.2017 39 1 8.1109 -6.8242 -0.2044 40 1 9.7986 -9.9969 0.0178 41 1 9.6140 -4.5916 0.0703 42 1 10.5122 -4.5369 1.6173 43 1 2.3742 -0.1023 1.9976 44 1 1.3131 -1.4758 1.5776 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962233406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:18 Heat of formation + Delta-G solvation = -1.423244 kcal Electronic energy + Delta-G solvation = -24906.200766 eV Core-core repulsion = 21246.593648 eV Total energy + Delta-G solvation = -3659.607118 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.91718 -39.41565 -38.31575 -37.80555 -34.67491 -33.29532 -32.60622 -30.32245 -30.00638 -27.61494 -27.18344 -25.89608 -24.50224 -22.97587 -21.45361 -20.70014 -20.54319 -19.77284 -19.31875 -17.86321 -17.17078 -16.86465 -16.67657 -16.06872 -15.57473 -14.90251 -14.68544 -14.22648 -14.10776 -13.79077 -13.67406 -13.39699 -13.24437 -13.17331 -12.79939 -12.76488 -12.29098 -12.17245 -11.75341 -11.63171 -11.53186 -11.38055 -11.21759 -11.00968 -10.95767 -10.85322 -10.43715 -10.26751 -10.16190 -9.77016 -9.58979 -9.24278 -9.05034 -8.77210 -8.45132 -6.89881 -5.81819 -3.16352 1.33800 2.11721 3.10534 3.31663 3.38197 3.43171 3.45244 4.00805 4.20370 4.23412 4.33458 4.38345 4.45659 4.88633 4.93557 4.99450 5.08570 5.19504 5.26474 5.30828 5.34651 5.38977 5.51816 5.52619 5.54488 5.64378 5.67898 5.77632 5.83105 5.87060 5.90018 6.02662 6.15909 6.47255 6.61925 6.66442 6.86025 6.93824 7.22264 7.31743 7.50353 7.61664 7.69455 7.96722 8.17927 9.08648 9.71274 10.47637 11.32590 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.044144 B = 0.002335 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.138024 B =11987.299487 C =12128.000124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.133 4.133 5 C 0.095 3.905 6 N -0.592 5.592 7 C 0.522 3.478 8 O -0.523 6.523 9 C 0.512 3.488 10 O -0.516 6.516 11 N -0.665 5.665 12 C 0.091 3.909 13 H 0.136 0.864 14 C -0.175 4.175 15 H 0.106 0.894 16 C 0.185 3.815 17 N -0.593 5.593 18 C -0.227 4.227 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.915 5.915 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.156 3.844 27 C -0.182 4.182 28 H 0.105 0.895 29 C 0.109 3.891 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.411 0.589 38 H 0.093 0.907 39 H 0.027 0.973 40 H 0.255 0.745 41 H 0.029 0.971 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.977 18.020 -0.636 25.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 H 0.105 0.895 4 C -0.171 4.171 5 C -0.027 4.027 6 N -0.327 5.327 7 C 0.305 3.695 8 O -0.399 6.399 9 C 0.292 3.708 10 O -0.392 6.392 11 N -0.314 5.314 12 C -0.015 4.015 13 H 0.154 0.846 14 C -0.197 4.197 15 H 0.124 0.876 16 C 0.059 3.941 17 N -0.316 5.316 18 C -0.355 4.355 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.561 5.561 22 Si 0.744 3.256 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.029 3.971 27 C -0.203 4.203 28 H 0.123 0.877 29 C -0.014 4.014 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.247 0.753 38 H 0.111 0.889 39 H 0.045 0.955 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.734 17.731 -0.839 25.092 hybrid contribution 0.518 -0.586 0.858 1.161 sum -17.217 17.145 0.019 24.297 Atomic orbital electron populations 1.21756 0.93525 1.02401 1.02279 1.22259 0.96555 0.99467 0.94207 0.89458 1.22968 0.95974 1.00459 0.97687 1.22717 0.97102 1.03041 0.79874 1.48247 1.29196 1.42850 1.12391 1.19914 0.83664 0.80019 0.85885 1.90764 1.70293 1.63101 1.15789 1.19847 0.83595 0.80673 0.86648 1.90714 1.69774 1.62973 1.15749 1.45172 1.28622 1.43086 1.14537 1.21997 0.84887 0.96861 0.97709 0.84646 1.24745 1.01150 0.90442 1.03327 0.87641 1.21074 0.81683 0.96581 0.94737 1.45184 1.03800 0.98883 1.83722 1.19012 0.90380 0.90929 1.35208 0.90441 1.24914 0.98285 0.97826 0.99273 1.69893 1.30628 1.13609 1.41980 0.86071 0.81401 0.80444 0.77644 1.21530 1.21654 1.20470 1.21119 0.92531 0.87050 0.96377 1.24412 0.92140 1.02327 1.01446 0.87657 1.22161 0.87359 0.94708 0.97129 0.92205 0.92223 0.91890 0.90314 0.89464 0.87731 0.90746 0.75322 0.88881 0.95459 0.93500 0.95364 0.92847 0.90984 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 9.16 37.16 0.34 -0.31 16 2 C -0.11 -0.61 3.55 -88.79 -0.31 -0.93 16 3 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.13 -0.83 6.53 -24.58 -0.16 -0.99 16 5 C 0.09 0.88 6.06 -2.53 -0.02 0.86 16 6 N -0.59 -6.55 3.33 -171.03 -0.57 -7.12 16 7 C 0.52 7.15 7.91 -11.58 -0.09 7.06 16 8 O -0.52 -8.09 16.80 5.50 0.09 -7.99 16 9 C 0.51 7.56 7.86 -11.58 -0.09 7.47 16 10 O -0.52 -8.35 13.35 5.50 0.07 -8.28 16 11 N -0.66 -9.74 5.56 -54.23 -0.30 -10.04 16 12 C 0.09 1.53 5.98 -67.93 -0.41 1.12 16 13 H 0.14 2.47 7.40 -51.93 -0.38 2.09 16 14 C -0.18 -3.30 7.06 -89.22 -0.63 -3.93 16 15 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 16 C 0.19 4.41 5.70 -2.41 -0.01 4.40 16 17 N -0.59 -15.09 3.38 -168.86 -0.57 -15.66 16 18 C -0.23 -6.28 10.35 -15.06 -0.16 -6.44 16 19 H 0.08 2.07 7.84 -52.48 -0.41 1.66 16 20 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 21 N -0.92 -26.63 10.86 55.49 0.60 -26.03 16 22 Si 0.91 21.84 29.56 -169.99 -5.03 16.81 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.16 3.26 7.04 -2.41 -0.02 3.25 16 27 C -0.18 -3.25 7.06 -89.22 -0.63 -3.88 16 28 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 29 C 0.11 0.92 6.46 -3.07 -0.02 0.90 16 30 H 0.06 0.30 8.06 -51.93 -0.42 -0.12 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 0.50 8.05 -51.93 -0.42 0.08 16 34 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.10 1.15 6.16 -51.93 -0.32 0.83 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.41 5.48 8.30 -40.82 -0.34 5.14 16 38 H 0.09 2.47 6.51 -51.93 -0.34 2.13 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.64 7.77 -51.93 -0.40 0.24 16 LS Contribution 358.23 15.07 5.40 5.40 Total: -1.00 -31.60 358.23 -9.42 -41.01 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.82 Total: 3.57 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -2.30 Total: 8.32 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.84 Total: -58.84 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: 0.17 Total: -16.27 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.60 -9.42 -41.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962233406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.589 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds