Wall clock time and date at job start Fri Apr 10 2020 17:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.77950 * 2 1 4 4 C 1.55157 * 110.71978 * 236.76318 * 2 1 3 5 5 C 1.54908 * 101.58279 * 206.12900 * 4 2 1 6 6 N 1.47427 * 104.83126 * 37.00993 * 5 4 2 7 7 C 1.34777 * 125.65040 * 155.90755 * 6 5 4 8 8 O 1.21350 * 120.00111 * 179.97438 * 7 6 5 9 9 C 1.49453 * 119.99635 * 359.97023 * 7 6 5 10 10 O 1.21347 * 120.00162 * 0.02562 * 9 7 6 11 11 N 1.34777 * 119.99635 * 179.97438 * 9 7 6 12 12 C 1.46505 * 119.99878 * 180.02562 * 11 9 7 13 13 H 1.08991 * 115.51597 * 350.41746 * 12 11 9 14 14 C 1.53000 * 117.44097 * 205.00077 * 12 11 9 15 15 H 1.09003 * 119.53859 * 4.12171 * 14 12 11 16 16 C 1.54388 * 118.11987 * 160.80955 * 14 12 11 17 17 N 1.48144 * 104.61944 * 87.19181 * 16 14 12 18 18 C 1.36933 * 127.83783 * 140.38807 * 17 16 14 19 19 H 1.08004 * 119.99887 * 195.57447 * 18 17 16 20 20 C 1.38814 * 120.00271 * 15.58140 * 18 17 16 21 21 N 1.31618 * 119.99788 * 8.99710 * 20 18 17 22 22 Si 1.86796 * 119.99996 * 189.00202 * 20 18 17 23 23 H 1.48501 * 109.47000 * 94.44418 * 22 20 18 24 24 H 1.48497 * 109.47116 * 214.43747 * 22 20 18 25 25 H 1.48500 * 109.47227 * 334.44549 * 22 20 18 26 26 C 1.48152 * 104.32222 * 320.41394 * 17 16 14 27 27 C 1.53002 * 117.44082 * 135.76246 * 12 11 9 28 28 H 1.08997 * 119.54161 * 355.88082 * 27 12 11 29 29 C 1.47022 * 108.69957 * 335.86928 * 6 5 4 30 30 H 1.09002 * 109.46639 * 183.23906 * 1 2 3 31 31 H 1.09000 * 109.47348 * 303.23594 * 1 2 3 32 32 H 1.08999 * 109.47354 * 63.23892 * 1 2 3 33 33 H 1.08999 * 111.00545 * 324.20541 * 4 2 1 34 34 H 1.09006 * 111.00434 * 88.01915 * 4 2 1 35 35 H 1.09003 * 110.36982 * 155.84600 * 5 4 2 36 36 H 1.09003 * 110.36893 * 278.17177 * 5 4 2 37 37 H 0.96998 * 120.00227 * 0.02562 * 11 9 7 38 38 H 1.09003 * 110.40476 * 205.97608 * 16 14 12 39 39 H 1.09004 * 110.40623 * 328.40482 * 16 14 12 40 40 H 0.97002 * 119.99797 * 179.97438 * 21 20 18 41 41 H 1.08994 * 110.40672 * 280.80399 * 26 17 16 42 42 H 1.08998 * 110.50527 * 158.41734 * 26 17 16 43 43 H 1.08997 * 109.88279 * 241.63980 * 29 6 5 44 44 H 1.09005 * 109.87837 * 120.48134 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0789 -0.7954 -1.2138 5 6 3.4633 -1.2496 -0.6877 6 7 3.2446 -1.5506 0.7389 7 6 3.9925 -2.3834 1.4896 8 8 3.7193 -2.5563 2.6593 9 6 5.1581 -3.0941 0.8815 10 8 5.4314 -2.9210 -0.2881 11 7 5.9063 -3.9265 1.6323 12 6 7.0493 -4.6228 1.0364 13 1 7.1331 -4.5452 -0.0476 14 6 7.4920 -5.9355 1.6857 15 1 6.9157 -6.3460 2.5150 16 6 8.3620 -6.9019 0.8535 17 7 9.7530 -6.4496 1.0888 18 6 10.8692 -7.2229 1.2650 19 1 11.7691 -6.7871 1.6734 20 6 10.8443 -8.5669 0.9185 21 7 9.8158 -9.0579 0.2602 22 14 12.2706 -9.6787 1.3867 23 1 11.9679 -10.3572 2.6725 24 1 12.4733 -10.6973 0.3253 25 1 13.5043 -8.8654 1.5346 26 6 9.6621 -4.9709 1.0909 27 6 8.3492 -4.6623 1.8423 28 1 8.4116 -4.1243 2.7882 29 6 2.0761 -0.7911 1.2072 30 1 -0.3633 -1.0261 0.0581 31 1 -0.3634 0.5632 0.8595 32 1 -0.3634 0.4627 -0.9176 33 1 1.4452 -1.6536 -1.4375 34 1 2.1842 -0.1519 -2.0873 35 1 3.7961 -2.1425 -1.2170 36 1 4.1931 -0.4477 -0.7986 37 1 5.6880 -4.0647 2.5673 38 1 8.2314 -7.9265 1.2017 39 1 8.1109 -6.8242 -0.2044 40 1 9.7986 -9.9969 0.0178 41 1 9.6140 -4.5916 0.0703 42 1 10.5122 -4.5369 1.6173 43 1 2.3742 -0.1023 1.9976 44 1 1.3131 -1.4758 1.5776 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962233406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:18 Heat of formation + Delta-G solvation = -22.134043 kcal Electronic energy + Delta-G solvation = -24907.098853 eV Core-core repulsion = 21246.593648 eV Total energy + Delta-G solvation = -3660.505206 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.99500 -40.70088 -39.56432 -38.80475 -36.22867 -34.49208 -33.87605 -32.15822 -30.65009 -28.95482 -28.47537 -27.60830 -25.57641 -23.96261 -22.94482 -22.05784 -21.31444 -20.96037 -20.86050 -18.96768 -18.77095 -18.27187 -17.57078 -17.36278 -16.72642 -16.53187 -16.02509 -15.52814 -15.13889 -14.99299 -14.76058 -14.65444 -14.44649 -14.12989 -13.85884 -13.73841 -13.42740 -13.37564 -13.27824 -12.95150 -12.74606 -12.71135 -12.67350 -12.17508 -12.03088 -11.95718 -11.92085 -11.72482 -11.69464 -11.51640 -10.92139 -10.75853 -10.65393 -9.99804 -9.83148 -8.93610 -7.92462 -5.29309 0.20612 1.05407 1.47528 1.49061 1.58429 1.95872 2.26987 2.48494 2.76748 3.10087 3.29355 3.55153 3.56751 3.61130 3.75813 3.85177 3.89811 4.09111 4.27388 4.33786 4.36236 4.45211 4.56649 4.59106 4.65667 4.78394 4.83916 4.85876 4.93428 4.97994 5.01624 5.08523 5.14187 5.22593 5.28222 5.31831 5.42262 5.45539 5.48546 5.63025 5.91888 6.12909 6.15953 6.54714 6.81634 6.99535 7.66247 8.44151 9.21526 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.044144 B = 0.002335 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.138024 B =11987.299487 C =12128.000124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 H 0.101 0.899 4 C -0.124 4.124 5 C 0.088 3.912 6 N -0.588 5.588 7 C 0.521 3.479 8 O -0.546 6.546 9 C 0.513 3.487 10 O -0.532 6.532 11 N -0.658 5.658 12 C 0.116 3.884 13 H 0.122 0.878 14 C -0.178 4.178 15 H 0.124 0.876 16 C 0.190 3.810 17 N -0.617 5.617 18 C -0.240 4.240 19 H 0.084 0.916 20 C -0.063 4.063 21 N -0.948 5.948 22 Si 0.982 3.018 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.266 1.266 26 C 0.150 3.850 27 C -0.166 4.166 28 H 0.133 0.867 29 C 0.101 3.899 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.420 0.580 38 H 0.060 0.940 39 H 0.003 0.997 40 H 0.250 0.750 41 H 0.026 0.974 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.885 20.130 -0.067 27.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.119 0.881 4 C -0.162 4.162 5 C -0.033 4.033 6 N -0.321 5.321 7 C 0.304 3.696 8 O -0.424 6.424 9 C 0.294 3.706 10 O -0.408 6.408 11 N -0.308 5.308 12 C 0.010 3.990 13 H 0.140 0.860 14 C -0.199 4.199 15 H 0.142 0.858 16 C 0.064 3.936 17 N -0.341 5.341 18 C -0.368 4.368 19 H 0.101 0.899 20 C -0.257 4.257 21 N -0.595 5.595 22 Si 0.810 3.190 23 H -0.213 1.213 24 H -0.221 1.221 25 H -0.190 1.190 26 C 0.025 3.975 27 C -0.187 4.187 28 H 0.151 0.849 29 C -0.021 4.021 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.128 0.872 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.258 0.742 38 H 0.078 0.922 39 H 0.021 0.979 40 H 0.059 0.941 41 H 0.043 0.957 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.671 19.902 -0.273 27.290 hybrid contribution 0.756 -1.154 0.594 1.502 sum -17.915 18.748 0.320 25.933 Atomic orbital electron populations 1.21746 0.92349 1.02357 1.03245 1.22265 0.97350 0.99501 0.92321 0.88067 1.22970 0.93800 1.00900 0.98545 1.22845 0.99299 1.02395 0.78779 1.48425 1.29006 1.41619 1.13024 1.19616 0.83651 0.80602 0.85745 1.90752 1.70941 1.64237 1.16513 1.20136 0.83745 0.80365 0.86368 1.90718 1.70208 1.63444 1.16464 1.45009 1.27935 1.42904 1.14970 1.21571 0.85287 0.95219 0.96952 0.86028 1.24413 1.01921 0.90074 1.03476 0.85804 1.20791 0.82522 0.96260 0.94025 1.45479 1.03874 1.00855 1.83895 1.19401 0.91310 0.91559 1.34571 0.89874 1.25771 1.00947 0.99284 0.99703 1.70088 1.32552 1.13475 1.43406 0.85013 0.78826 0.78282 0.76891 1.21276 1.22141 1.19031 1.21248 0.94729 0.84689 0.96853 1.24320 0.90708 1.01504 1.02132 0.84898 1.22428 0.86323 0.94705 0.98598 0.92748 0.91608 0.90634 0.90352 0.87233 0.89654 0.90213 0.74210 0.92170 0.97943 0.94057 0.95666 0.91669 0.90759 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.16 71.98 0.66 -0.23 16 2 C -0.10 -0.85 3.55 -9.61 -0.03 -0.88 16 3 H 0.10 0.67 8.14 -2.39 -0.02 0.66 16 4 C -0.12 -1.25 6.53 31.99 0.21 -1.04 16 5 C 0.09 1.52 6.06 86.85 0.53 2.04 16 6 N -0.59 -12.27 3.33 -813.36 -2.71 -14.98 16 7 C 0.52 13.79 7.91 87.27 0.69 14.48 16 8 O -0.55 -16.35 16.80 -3.25 -0.05 -16.40 16 9 C 0.51 14.71 7.86 87.27 0.69 15.40 16 10 O -0.53 -16.96 13.35 -3.24 -0.04 -17.01 16 11 N -0.66 -18.41 5.56 -443.86 -2.47 -20.88 16 12 C 0.12 3.80 5.98 44.99 0.27 4.07 16 13 H 0.12 4.44 7.40 -2.39 -0.02 4.42 16 14 C -0.18 -6.62 7.06 -9.89 -0.07 -6.69 16 15 H 0.12 4.17 8.14 -2.39 -0.02 4.15 16 16 C 0.19 9.36 5.70 86.53 0.49 9.85 16 17 N -0.62 -31.87 3.38 -688.14 -2.33 -34.20 16 18 C -0.24 -13.40 10.35 84.03 0.87 -12.53 16 19 H 0.08 4.42 7.84 -2.91 -0.02 4.40 16 20 C -0.06 -3.59 5.40 84.86 0.46 -3.13 16 21 N -0.95 -56.97 10.86 21.65 0.24 -56.73 16 22 Si 0.98 45.41 29.56 68.60 2.03 47.44 16 23 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 C 0.15 6.22 7.04 86.53 0.61 6.83 16 27 C -0.17 -5.65 7.06 -9.89 -0.07 -5.72 16 28 H 0.13 3.88 8.14 -2.39 -0.02 3.86 16 29 C 0.10 1.53 6.46 86.73 0.56 2.09 16 30 H 0.05 0.42 8.06 -2.39 -0.02 0.40 16 31 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.08 0.82 8.05 -2.39 -0.02 0.80 16 34 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.09 1.83 6.16 -2.39 -0.01 1.82 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.42 10.45 8.30 -92.71 -0.77 9.69 16 38 H 0.06 3.34 6.51 -2.39 -0.02 3.32 16 39 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.25 14.57 8.31 -92.71 -0.77 13.79 16 41 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.07 1.14 7.77 -2.38 -0.02 1.13 16 Total: -1.00 -69.40 358.23 0.77 -68.63 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.24 Total: 19.58 kcal Atomic # 6 Polarization: 18.68 SS G_CDS: 5.86 Total: 24.54 kcal Atomic # 7 Polarization: -119.52 SS G_CDS: -7.26 Total: -126.78 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.10 Total: -33.41 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -69.40 0.77 -68.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962233406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.498 kcal (2) G-P(sol) polarization free energy of solvation -69.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds