Wall clock time and date at job start Fri Apr 10 2020 17:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00182 * 2 1 4 4 H 1.48498 * 109.47643 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47186 * 299.99884 * 3 2 1 6 6 H 1.48506 * 109.47038 * 59.99581 * 3 2 1 7 7 C 1.38817 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00529 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99727 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00152 * 179.97438 * 9 7 2 11 11 C 1.53952 * 113.58286 * 204.99868 * 10 9 7 12 12 C 1.52912 * 86.88147 * 270.00206 * 11 10 9 13 13 C 1.53102 * 87.97362 * 335.17779 * 12 11 10 14 14 C 1.52910 * 121.13126 * 209.43071 * 12 11 10 15 15 C 1.53952 * 86.78401 * 259.17921 * 14 12 11 16 16 N 1.46499 * 113.58140 * 220.66873 * 15 14 12 17 17 C 1.34777 * 119.99643 * 252.71960 * 16 15 14 18 18 O 1.21278 * 120.00093 * 0.02562 * 17 16 15 19 19 C 1.50705 * 119.99863 * 179.97438 * 17 16 15 20 20 H 1.08995 * 110.21543 * 320.47405 * 19 17 16 21 21 C 1.54475 * 110.24359 * 82.49466 * 19 17 16 22 22 C 1.54636 * 101.76512 * 144.41543 * 21 19 17 23 23 C 1.51285 * 104.19093 * 335.20453 * 22 21 19 24 24 O 1.21280 * 124.94051 * 196.22964 * 23 22 21 25 25 N 1.34417 * 110.11752 * 16.24883 * 23 22 21 26 26 C 1.52906 * 121.13802 * 100.86958 * 12 11 10 27 27 H 0.96999 * 120.00116 * 0.02562 * 1 2 3 28 28 H 0.97008 * 120.00336 * 359.97438 * 9 7 2 29 29 H 1.08999 * 112.82409 * 336.08394 * 10 9 7 30 30 H 1.09002 * 113.66200 * 24.51996 * 11 10 9 31 31 H 1.08998 * 113.66411 * 155.48189 * 11 10 9 32 32 H 1.08992 * 113.58273 * 270.34714 * 13 12 11 33 33 H 1.09007 * 113.79999 * 139.32614 * 13 12 11 34 34 H 1.08994 * 113.66602 * 13.65313 * 14 12 11 35 35 H 1.09008 * 113.66263 * 144.70834 * 14 12 11 36 36 H 1.08996 * 113.64677 * 89.87925 * 15 14 12 37 37 H 0.97002 * 120.00176 * 72.71410 * 16 15 14 38 38 H 1.08995 * 110.97486 * 262.53286 * 21 19 17 39 39 H 1.08997 * 110.97316 * 26.30193 * 21 19 17 40 40 H 1.08995 * 110.48982 * 216.52392 * 22 21 19 41 41 H 1.08999 * 110.59679 * 93.93296 * 22 21 19 42 42 H 0.96995 * 124.34701 * 180.38464 * 25 23 22 43 43 H 1.08992 * 113.66500 * 215.28578 * 26 12 11 44 44 H 1.08999 * 113.66496 * 346.25827 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.2585 -4.8295 -0.5957 12 6 0.7429 -5.0887 0.8203 13 6 2.0049 -4.4007 1.3474 14 6 0.3591 -6.4968 1.2765 15 6 -1.1040 -6.0815 1.0382 16 7 -2.0258 -6.5647 2.0693 17 6 -2.8829 -7.5668 1.7908 18 8 -2.8908 -8.0688 0.6868 19 6 -3.8307 -8.0643 2.8516 20 1 -3.3301 -8.0958 3.8193 21 6 -5.0782 -7.1559 2.9224 22 6 -6.1943 -8.1774 3.2422 23 6 -5.6592 -9.4894 2.7121 24 8 -6.3273 -10.4813 2.5106 25 7 -4.3356 -9.3960 2.4974 26 6 -0.6492 -4.6262 1.2519 27 1 -0.4850 0.8400 -0.0004 28 1 0.3555 -2.3881 0.0005 29 1 3.0648 -3.5638 -0.4067 30 1 0.4815 -4.5190 -1.2943 31 1 1.8844 -5.6315 -0.9871 32 1 2.8405 -5.0828 1.5036 33 1 1.8257 -3.7472 2.2013 34 1 0.7052 -7.2835 0.6061 35 1 0.5924 -6.6967 2.3224 36 1 -1.4569 -6.2840 0.0270 37 1 -2.0191 -6.1634 2.9524 38 1 -4.9811 -6.4214 3.7218 39 1 -5.2596 -6.6670 1.9653 40 1 -7.1173 -7.9068 2.7296 41 1 -6.3603 -8.2397 4.3176 42 1 -3.7849 -10.1164 2.1530 43 1 -0.6994 -4.3003 2.2907 44 1 -1.1079 -3.9173 0.5626 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963637375.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:21 Heat of formation + Delta-G solvation = -43.511431 kcal Electronic energy + Delta-G solvation = -24946.390043 eV Core-core repulsion = 21284.957844 eV Total energy + Delta-G solvation = -3661.432199 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.97089 -41.34918 -39.94469 -37.46120 -36.97902 -35.19298 -33.65995 -32.24753 -31.42060 -29.29154 -26.81607 -26.54584 -25.84024 -24.59686 -23.24246 -21.71772 -21.46628 -21.27692 -19.27847 -19.03323 -18.57833 -18.26299 -17.22012 -16.91373 -16.68694 -16.17366 -16.07712 -15.79135 -15.65131 -15.23485 -14.91538 -14.70943 -14.39595 -14.12748 -13.79324 -13.68465 -13.50266 -13.39058 -13.09568 -12.98423 -12.90594 -12.79454 -12.48216 -12.11936 -12.08914 -11.99735 -11.74731 -11.35255 -11.12002 -11.09393 -11.00741 -10.79802 -10.59026 -10.16373 -9.99587 -8.95319 -7.93014 -5.20071 1.45065 1.46635 1.48733 1.49558 1.59110 1.97454 2.47444 2.57323 3.31537 3.39249 3.40293 3.56450 3.58211 3.69127 3.75988 3.87123 4.00616 4.02510 4.10628 4.19055 4.36984 4.47357 4.53834 4.81884 4.82666 4.83032 4.91499 4.97335 4.97741 4.99101 5.05139 5.10379 5.16519 5.18152 5.36729 5.46037 5.60891 5.63044 5.67010 5.71168 5.91755 6.31392 6.53817 7.11288 7.21271 7.36656 8.15339 8.38200 9.30480 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.025040 B = 0.002535 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.962029 B =11043.048716 C =11816.985756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.297 1.297 6 H -0.293 1.293 7 C -0.239 4.239 8 H 0.075 0.925 9 N -0.718 5.718 10 C 0.144 3.856 11 C -0.128 4.128 12 C -0.090 4.090 13 C -0.141 4.141 14 C -0.119 4.119 15 C 0.131 3.869 16 N -0.695 5.695 17 C 0.503 3.497 18 O -0.582 6.582 19 C 0.117 3.883 20 H 0.151 0.849 21 C -0.116 4.116 22 C -0.145 4.145 23 C 0.510 3.490 24 O -0.588 6.588 25 N -0.712 5.712 26 C -0.113 4.113 27 H 0.250 0.750 28 H 0.376 0.624 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.420 0.580 38 H 0.144 0.856 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.139 0.861 42 H 0.410 0.590 43 H 0.098 0.902 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.641 -15.368 11.808 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.799 3.201 4 H -0.192 1.192 5 H -0.224 1.224 6 H -0.220 1.220 7 C -0.371 4.371 8 H 0.093 0.907 9 N -0.357 5.357 10 C 0.034 3.966 11 C -0.167 4.167 12 C -0.090 4.090 13 C -0.182 4.182 14 C -0.157 4.157 15 C 0.025 3.975 16 N -0.346 5.346 17 C 0.289 3.711 18 O -0.461 6.461 19 C 0.009 3.991 20 H 0.168 0.832 21 C -0.154 4.154 22 C -0.185 4.185 23 C 0.299 3.701 24 O -0.469 6.469 25 N -0.365 5.365 26 C -0.151 4.151 27 H 0.059 0.941 28 H 0.209 0.791 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.107 0.893 37 H 0.259 0.741 38 H 0.162 0.838 39 H 0.092 0.908 40 H 0.128 0.872 41 H 0.157 0.843 42 H 0.249 0.751 43 H 0.116 0.884 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.902 -15.992 10.958 20.264 hybrid contribution 0.327 0.957 -0.395 1.086 sum -5.575 -15.035 10.563 19.202 Atomic orbital electron populations 1.69805 1.06452 1.25869 1.59715 1.25494 0.96365 1.00841 1.03993 0.85123 0.78268 0.80131 0.76540 1.19178 1.22403 1.22035 1.19702 0.91480 0.85250 1.40651 0.90702 1.42305 1.05462 1.00366 1.87522 1.21427 0.94662 0.84942 0.95558 1.23160 0.99700 0.98680 0.95142 1.22021 0.94160 0.96187 0.96667 1.23455 0.97248 0.98785 0.98703 1.23207 0.94136 0.95672 1.02702 1.22338 0.88658 0.93996 0.92492 1.45846 1.36512 1.35923 1.16367 1.21278 0.80848 0.79826 0.89124 1.90744 1.70861 1.58790 1.25707 1.21913 0.95987 0.83388 0.97858 0.83208 1.22736 0.89855 0.97216 1.05551 1.22421 1.00333 0.90149 1.05553 1.21653 0.82074 0.90639 0.75775 1.90735 1.62697 1.37855 1.55580 1.46132 1.09671 1.14693 1.66030 1.22978 0.94792 0.94992 1.02312 0.94090 0.79103 0.92674 0.93292 0.87898 0.88703 0.93117 0.91084 0.87844 0.89317 0.74148 0.83812 0.90807 0.87228 0.84276 0.75107 0.88361 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.49 13.06 21.65 0.28 -57.21 16 2 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 3 Si 0.97 45.10 29.55 68.60 2.03 47.13 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 7 C -0.24 -12.89 9.97 84.04 0.84 -12.06 16 8 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.72 -34.72 5.31 -319.91 -1.70 -36.42 16 10 C 0.14 5.39 4.55 45.63 0.21 5.60 16 11 C -0.13 -3.94 7.58 30.89 0.23 -3.70 16 12 C -0.09 -2.39 1.03 -52.25 -0.05 -2.45 16 13 C -0.14 -4.25 7.65 30.95 0.24 -4.01 16 14 C -0.12 -2.43 7.64 30.89 0.24 -2.20 16 15 C 0.13 2.89 4.24 45.63 0.19 3.09 16 16 N -0.70 -10.60 5.35 -439.50 -2.35 -12.95 16 17 C 0.50 9.13 7.01 87.66 0.61 9.75 16 18 O -0.58 -16.87 16.18 -3.02 -0.05 -16.92 16 19 C 0.12 1.20 3.92 44.70 0.18 1.37 16 20 H 0.15 0.32 8.14 -2.39 -0.02 0.30 16 21 C -0.12 -0.80 6.67 31.65 0.21 -0.59 16 22 C -0.14 -1.36 6.86 30.59 0.21 -1.15 16 23 C 0.51 10.12 8.43 87.90 0.74 10.86 16 24 O -0.59 -17.65 18.03 -3.03 -0.05 -17.70 16 25 N -0.71 -11.84 5.47 -442.99 -2.42 -14.27 16 26 C -0.11 -2.97 7.15 30.89 0.22 -2.75 16 27 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 28 H 0.38 19.38 6.79 -92.70 -0.63 18.75 16 29 H 0.06 2.09 8.10 -2.39 -0.02 2.07 16 30 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.09 2.47 7.47 -2.39 -0.02 2.45 16 37 H 0.42 3.41 8.73 -92.71 -0.81 2.60 16 38 H 0.14 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.07 0.82 7.90 -2.39 -0.02 0.80 16 40 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.41 7.41 8.96 -92.71 -0.83 6.58 16 43 H 0.10 2.33 8.12 -2.39 -0.02 2.31 16 44 H 0.05 1.65 7.48 -2.39 -0.02 1.63 16 Total: -1.00 -78.49 363.59 -0.97 -79.46 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: -1.23 Total: 30.84 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 4.53 Total: -1.95 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -6.19 Total: -120.85 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -0.10 Total: -34.62 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -78.49 -0.97 -79.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963637375.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.945 kcal (2) G-P(sol) polarization free energy of solvation -78.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds