Wall clock time and date at job start Fri Apr 10 2020 17:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.46954 * 2 1 4 4 C 1.35542 * 125.67534 * 265.32993 * 3 2 1 5 5 C 1.35453 * 108.86847 * 179.97438 * 4 3 2 6 6 C 1.39835 * 107.86688 * 359.73579 * 5 4 3 7 7 C 1.37651 * 125.68164 * 85.30076 * 3 2 1 8 8 C 1.46682 * 126.23028 * 0.02562 * 7 3 2 9 9 O 1.21690 * 119.99896 * 355.04515 * 8 7 3 10 10 N 1.34771 * 119.99589 * 175.03927 * 8 7 3 11 11 C 1.46504 * 119.99814 * 184.90054 * 10 8 7 12 12 H 1.09008 * 109.45917 * 325.00074 * 11 10 8 13 13 C 1.53042 * 109.44790 * 84.96644 * 11 10 8 14 14 C 1.53198 * 109.31084 * 181.38096 * 13 11 10 15 15 N 1.46923 * 108.77455 * 305.36543 * 14 13 11 16 16 C 1.36938 * 120.62710 * 233.63262 * 15 14 13 17 17 H 1.07996 * 120.00108 * 31.55544 * 16 15 14 18 18 C 1.38820 * 119.99628 * 211.55206 * 16 15 14 19 19 N 1.31615 * 119.99916 * 10.28026 * 18 16 15 20 20 Si 1.86801 * 119.99676 * 190.27937 * 18 16 15 21 21 H 1.48503 * 109.47125 * 90.00615 * 20 18 16 22 22 H 1.48501 * 109.46928 * 209.99805 * 20 18 16 23 23 H 1.48491 * 109.47395 * 330.00316 * 20 18 16 24 24 C 1.46921 * 118.74168 * 53.61165 * 15 14 13 25 25 C 1.53037 * 109.46231 * 205.02748 * 11 10 8 26 26 H 1.08997 * 109.49987 * 298.61236 * 25 11 10 27 27 O 1.42903 * 109.49715 * 58.67774 * 25 11 10 28 28 H 1.09000 * 109.46808 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47400 * 300.00121 * 1 2 3 30 30 H 1.09003 * 109.46983 * 60.00566 * 1 2 3 31 31 H 1.09000 * 109.47400 * 239.99879 * 2 1 3 32 32 H 1.09000 * 109.47348 * 119.99818 * 2 1 3 33 33 H 1.07992 * 125.56545 * 359.94012 * 4 3 2 34 34 H 1.07998 * 126.06640 * 180.02562 * 5 4 3 35 35 H 1.08002 * 126.45917 * 180.30466 * 6 5 4 36 36 H 0.97002 * 120.00871 * 4.90354 * 10 8 7 37 37 H 1.09000 * 109.50035 * 301.32746 * 13 11 10 38 38 H 1.09000 * 109.49868 * 61.42823 * 13 11 10 39 39 H 1.09003 * 109.58349 * 185.57929 * 14 13 11 40 40 H 1.08998 * 109.70729 * 65.22435 * 14 13 11 41 41 H 0.97007 * 119.99648 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.59167 * 186.60782 * 24 15 14 43 43 H 1.08993 * 109.70740 * 66.24505 * 24 15 14 44 44 H 0.96697 * 114.00294 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3662 2.0966 -1.0974 5 6 2.7678 3.3300 -0.7071 6 6 2.6630 3.3945 0.6858 7 6 2.1995 2.1688 1.1143 8 6 1.9405 1.7773 2.5040 9 8 1.4403 0.6951 2.7482 10 7 2.2566 2.6161 3.5104 11 6 2.0983 2.1839 4.9013 12 1 1.2263 1.5349 4.9828 13 6 3.3475 1.4174 5.3420 14 6 3.1643 0.9373 6.7853 15 7 2.8363 2.0937 7.6303 16 6 3.5691 2.3664 8.7545 17 1 4.6196 2.1182 8.7877 18 6 2.9615 2.9619 9.8514 19 7 1.6513 3.0803 9.8942 20 14 4.0033 3.5951 11.2667 21 1 4.3717 5.0115 11.0152 22 1 3.2299 3.5019 12.5310 23 1 5.2364 2.7754 11.3791 24 6 1.7077 2.9521 7.2459 25 6 1.9071 3.4096 5.7975 26 1 2.7890 4.0471 5.7350 27 8 0.7581 4.1414 5.3659 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3298 1.7411 -2.1165 34 1 3.1044 4.1243 -1.3568 35 1 2.9021 4.2437 1.3088 36 1 2.5890 3.5060 3.3140 37 1 3.4962 0.5576 4.6888 38 1 4.2161 2.0734 5.2843 39 1 4.0878 0.4777 7.1374 40 1 2.3537 0.2100 6.8306 41 1 1.2268 3.4961 10.6609 42 1 1.6700 3.8219 7.9018 43 1 0.7759 2.3925 7.3272 44 1 0.5760 4.9330 5.8906 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090813732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:01 Heat of formation + Delta-G solvation = -40.372385 kcal Electronic energy + Delta-G solvation = -25973.512677 eV Core-core repulsion = 22312.216597 eV Total energy + Delta-G solvation = -3661.296080 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.34842 -40.69193 -39.14580 -36.89773 -35.96913 -34.99411 -33.92385 -31.62639 -30.62099 -30.22580 -29.78992 -26.99554 -24.67347 -24.33972 -23.70699 -22.84210 -21.41888 -21.27925 -20.31307 -19.06618 -18.54392 -18.12034 -17.34850 -16.86587 -16.57160 -16.38147 -15.64137 -15.55501 -15.44408 -15.26791 -14.95352 -14.86650 -14.53802 -14.39018 -13.86679 -13.56737 -13.43492 -13.37274 -13.17271 -13.10327 -12.99593 -12.85276 -12.69553 -12.55477 -12.17079 -12.08337 -12.01114 -11.90001 -11.41049 -11.06724 -10.88146 -10.62031 -10.11087 -9.67133 -9.12884 -8.71700 -7.90422 -5.44061 0.52048 1.48975 1.49781 1.59142 1.69664 1.87230 2.37804 2.41605 2.48762 3.10998 3.28121 3.62801 3.76362 3.82519 3.94079 4.05114 4.11736 4.19167 4.30189 4.37524 4.40485 4.44341 4.47139 4.49980 4.68538 4.76161 4.86635 4.87942 4.91038 5.02563 5.15693 5.16520 5.20779 5.30886 5.32689 5.45381 5.58238 5.62693 5.86585 6.04832 6.35465 6.38611 6.57160 6.82486 7.10721 7.21148 7.75953 8.30729 9.15723 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.028532 B = 0.003162 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.118122 B = 8853.762496 C = 9045.334747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.095 3.905 3 N -0.415 5.415 4 C 0.025 3.975 5 C -0.220 4.220 6 C -0.140 4.140 7 C -0.086 4.086 8 C 0.581 3.419 9 O -0.587 6.587 10 N -0.695 5.695 11 C 0.174 3.826 12 H 0.056 0.944 13 C -0.122 4.122 14 C 0.143 3.857 15 N -0.604 5.604 16 C -0.268 4.268 17 H 0.072 0.928 18 C -0.046 4.046 19 N -0.936 5.936 20 Si 0.973 3.027 21 H -0.280 1.280 22 H -0.297 1.297 23 H -0.269 1.269 24 C 0.159 3.841 25 C 0.092 3.908 26 H 0.066 0.934 27 O -0.574 6.574 28 H 0.088 0.912 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.077 0.923 33 H 0.205 0.795 34 H 0.166 0.834 35 H 0.154 0.846 36 H 0.411 0.589 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.009 0.991 41 H 0.252 0.748 42 H 0.073 0.927 43 H -0.006 1.006 44 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.430 0.625 -22.909 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.025 4.025 3 N -0.089 5.089 4 C -0.111 4.111 5 C -0.243 4.243 6 C -0.166 4.166 7 C -0.198 4.198 8 C 0.371 3.629 9 O -0.469 6.469 10 N -0.344 5.344 11 C 0.069 3.931 12 H 0.074 0.926 13 C -0.162 4.162 14 C 0.017 3.983 15 N -0.329 5.329 16 C -0.398 4.398 17 H 0.090 0.910 18 C -0.242 4.242 19 N -0.581 5.581 20 Si 0.801 3.199 21 H -0.207 1.207 22 H -0.223 1.223 23 H -0.193 1.193 24 C 0.032 3.968 25 C 0.031 3.969 26 H 0.084 0.916 27 O -0.381 6.381 28 H 0.107 0.893 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.142 0.858 32 H 0.096 0.904 33 H 0.221 0.779 34 H 0.183 0.817 35 H 0.172 0.828 36 H 0.247 0.753 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.027 0.973 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.012 0.988 44 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 1.836 -0.938 -22.997 23.089 hybrid contribution 0.116 0.994 1.721 1.991 sum 1.952 0.055 -21.276 21.365 Atomic orbital electron populations 1.22000 0.94043 1.03625 1.01651 1.22093 0.96046 0.79237 1.05141 1.44296 1.47126 1.12192 1.05251 1.22695 1.03224 0.92699 0.92490 1.21173 1.10048 0.98478 0.94587 1.21682 1.02739 0.95409 0.96812 1.19991 1.17793 0.94723 0.87325 1.17402 0.77172 0.83825 0.84537 1.90749 1.46204 1.24306 1.85677 1.45522 1.66361 1.17836 1.04728 1.20664 0.98083 0.94956 0.79417 0.92568 1.22212 0.97042 0.99860 0.97071 1.21033 0.98504 0.89113 0.89662 1.44196 1.35277 1.26888 1.26562 1.19555 0.91976 1.36946 0.91277 0.91018 1.25976 0.96422 1.02103 0.99653 1.70135 1.09146 1.47809 1.31024 0.85185 0.78042 0.78445 0.78240 1.20679 1.22338 1.19327 1.21209 0.88579 0.95351 0.91642 1.22586 0.88138 0.91987 0.94220 0.91585 1.86405 1.48338 1.43476 1.59909 0.89310 0.95016 0.91054 0.85800 0.90427 0.77864 0.81661 0.82793 0.75265 0.91294 0.90690 0.91390 0.97300 0.93890 0.90920 0.98760 0.75850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 10.17 71.98 0.73 -2.31 16 2 C 0.10 1.86 6.10 86.38 0.53 2.39 16 3 N -0.42 -9.26 2.76 -511.02 -1.41 -10.67 16 4 C 0.02 0.40 11.37 83.48 0.95 1.35 16 5 C -0.22 -3.82 10.81 22.01 0.24 -3.58 16 6 C -0.14 -3.08 10.35 22.57 0.23 -2.84 16 7 C -0.09 -2.33 6.89 40.35 0.28 -2.05 16 8 C 0.58 19.35 7.74 86.45 0.67 20.02 16 9 O -0.59 -23.10 13.92 -4.32 -0.06 -23.16 16 10 N -0.69 -21.83 4.90 -446.36 -2.19 -24.02 16 11 C 0.17 6.46 2.16 45.02 0.10 6.56 16 12 H 0.06 2.48 7.51 -2.38 -0.02 2.47 16 13 C -0.12 -4.41 5.65 30.67 0.17 -4.24 16 14 C 0.14 6.14 6.52 86.36 0.56 6.70 16 15 N -0.60 -30.15 2.99 -699.09 -2.09 -32.24 16 16 C -0.27 -14.34 9.58 84.04 0.81 -13.53 16 17 H 0.07 3.71 7.85 -2.91 -0.02 3.68 16 18 C -0.05 -2.49 5.06 84.86 0.43 -2.06 16 19 N -0.94 -54.08 11.04 21.65 0.24 -53.85 16 20 Si 0.97 43.51 29.57 68.60 2.03 45.54 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 C 0.16 7.61 4.88 86.37 0.42 8.04 16 25 C 0.09 3.46 3.14 30.67 0.10 3.56 16 26 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 27 O -0.57 -19.82 13.16 -148.98 -1.96 -21.78 16 28 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.03 0.86 7.63 -2.39 -0.02 0.84 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 31 H 0.12 1.42 8.12 -2.39 -0.02 1.40 16 32 H 0.08 1.96 6.71 -2.39 -0.02 1.94 16 33 H 0.20 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.15 2.83 7.45 -2.91 -0.02 2.81 16 36 H 0.41 10.80 7.50 -92.71 -0.70 10.10 16 37 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.07 2.77 7.93 -2.39 -0.02 2.76 16 40 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 42 H 0.07 3.79 6.11 -2.39 -0.01 3.78 16 43 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 44 H 0.39 10.67 9.08 -74.06 -0.67 10.00 16 Total: -1.00 -71.23 357.40 0.42 -70.80 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: -0.35 Total: 31.39 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: 6.21 Total: 17.99 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -5.45 Total: -120.78 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -2.02 Total: -44.94 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -71.23 0.42 -70.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090813732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.431 kcal (2) G-P(sol) polarization free energy of solvation -71.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds