Wall clock time and date at job start Fri Apr 10 2020 17:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46931 * 2 1 4 4 C 1.47203 * 109.47361 * 119.99183 * 2 1 3 5 5 N 2.60800 * 109.47221 * 119.99601 * 2 1 3 6 6 C 1.50698 * 109.47586 * 239.99761 * 2 1 3 7 7 O 1.21282 * 119.99848 * 264.94312 * 6 2 1 8 8 N 1.34771 * 120.00029 * 84.93411 * 6 2 1 9 9 C 1.46926 * 120.63456 * 174.93067 * 8 6 2 10 10 C 1.53191 * 108.77494 * 233.58909 * 9 8 6 11 11 C 1.53037 * 109.31172 * 305.35795 * 10 9 8 12 12 O 1.42904 * 109.46397 * 181.38738 * 11 10 9 13 13 C 1.42894 * 114.00380 * 149.99804 * 12 11 10 14 14 C 1.53490 * 114.20917 * 209.99953 * 13 12 11 15 15 N 1.47066 * 87.99055 * 220.14964 * 14 13 12 16 16 C 1.36931 * 136.06054 * 206.86449 * 15 14 13 17 17 H 1.07999 * 119.99828 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99978 * 179.97438 * 16 15 14 19 19 N 1.31614 * 119.99990 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99788 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47310 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47063 * 120.00344 * 20 18 16 23 23 H 1.48501 * 109.47005 * 239.99860 * 20 18 16 24 24 C 1.47067 * 87.88017 * 27.12065 * 15 14 13 25 25 C 1.53046 * 109.53868 * 61.36553 * 11 10 9 26 26 C 1.46933 * 120.63344 * 354.90392 * 8 6 2 27 27 H 1.09001 * 109.46603 * 181.40219 * 1 2 3 28 28 H 1.08999 * 109.46926 * 301.39594 * 1 2 3 29 29 H 1.08995 * 109.46681 * 61.40022 * 1 2 3 30 30 H 1.08988 * 109.59243 * 113.79466 * 9 8 6 31 31 H 1.09011 * 109.58102 * 353.36620 * 9 8 6 32 32 H 1.08999 * 109.50046 * 185.40787 * 10 9 8 33 33 H 1.08999 * 109.50069 * 65.30842 * 10 9 8 34 34 H 1.09005 * 109.46296 * 301.35918 * 11 10 9 35 35 H 1.08999 * 113.28105 * 343.06969 * 13 12 11 36 36 H 1.09003 * 113.46929 * 105.36886 * 14 13 12 37 37 H 1.09001 * 113.52366 * 334.94047 * 14 13 12 38 38 H 0.97007 * 119.99762 * 180.02562 * 19 18 16 39 39 H 1.08997 * 113.46702 * 87.66190 * 24 15 14 40 40 H 1.09001 * 113.46573 * 218.09998 * 24 15 14 41 41 H 1.09004 * 109.49460 * 58.58640 * 25 11 10 42 42 H 1.08996 * 109.49895 * 178.68291 * 25 11 10 43 43 H 1.09001 * 109.58738 * 246.20275 * 26 8 6 44 44 H 1.09002 * 109.57987 * 6.48242 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0208 -0.6937 1.2020 5 7 2.3994 -1.2293 2.1295 6 6 2.0325 -0.7104 -1.2304 7 8 2.3219 -1.8869 -1.1756 8 7 2.1600 -0.0385 -2.3917 9 6 2.7517 -0.6861 -3.5703 10 6 3.8974 0.1880 -4.0900 11 6 3.3774 1.6044 -4.3459 12 8 4.4359 2.4143 -4.8614 13 6 3.9977 3.4564 -5.7354 14 6 5.0173 3.8420 -6.8160 15 7 4.6435 5.2470 -6.5941 16 6 4.6435 6.3966 -7.3380 17 1 4.9865 6.3772 -8.3619 18 6 4.2027 7.5869 -6.7760 19 7 3.7853 7.6106 -5.5281 20 14 4.2021 9.1550 -7.7911 21 1 4.7156 8.8630 -9.1535 22 1 2.8173 9.6827 -7.8860 23 1 5.0735 10.1662 -7.1405 24 6 4.2758 4.8751 -5.2195 25 6 2.8666 2.2068 -3.0350 26 6 1.7093 1.3556 -2.5034 27 1 -0.3632 -1.0274 0.0251 28 1 -0.3633 0.5354 0.8772 29 1 -0.3632 0.4919 -0.9023 30 1 1.9943 -0.7950 -4.3463 31 1 3.1376 -1.6672 -3.2929 32 1 4.2825 -0.2316 -5.0193 33 1 4.6948 0.2219 -3.3476 34 1 2.5633 1.5671 -5.0697 35 1 2.9848 3.3075 -6.1094 36 1 4.7571 3.4753 -7.8090 37 1 6.0481 3.6184 -6.5411 38 1 3.4769 8.4423 -5.1355 39 1 5.1088 4.9264 -4.5184 40 1 3.3851 5.3868 -4.8549 41 1 3.6738 2.2216 -2.3026 42 1 2.5180 3.2240 -3.2135 43 1 0.8667 1.4131 -3.1925 44 1 1.4048 1.7208 -1.5225 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093516597.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:35 Heat of formation + Delta-G solvation = 10.310817 kcal Electronic energy + Delta-G solvation = -25214.429330 eV Core-core repulsion = 21555.331039 eV Total energy + Delta-G solvation = -3659.098291 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.86369 -38.99833 -37.71718 -36.80917 -35.64089 -33.95921 -32.25761 -31.45505 -31.26281 -27.59391 -26.14084 -24.77778 -24.60089 -23.63873 -22.98525 -21.50919 -20.04597 -19.36628 -18.08357 -17.81728 -16.87804 -16.43864 -16.03925 -15.74837 -15.06885 -14.82230 -14.56567 -14.43692 -14.38444 -13.95907 -13.80229 -13.42555 -13.27764 -13.03984 -12.93949 -12.74849 -12.50210 -12.27730 -12.11725 -12.04243 -11.94842 -11.77599 -11.43858 -11.23317 -11.15306 -10.96189 -10.71809 -10.53725 -10.40050 -10.11892 -10.06794 -9.54728 -9.07821 -8.87830 -8.69229 -6.96173 -5.84163 -3.17098 1.99701 2.17960 2.46040 2.77994 3.34471 3.39806 3.42578 3.43232 3.84759 3.96366 4.34151 4.40168 4.43448 4.55888 4.68776 4.78491 4.98470 5.02111 5.05901 5.13876 5.22531 5.24707 5.29874 5.34977 5.42962 5.52056 5.52920 5.57390 5.66335 5.69093 5.82200 6.00870 6.10882 6.22412 6.40362 6.53706 6.60608 6.89724 7.02976 7.15388 7.20748 7.45879 7.66697 7.80648 7.91188 8.96825 9.62795 10.55950 11.33479 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.025042 B = 0.002645 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.845471 B =10581.607289 C =11262.620598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.016 4.016 3 H 0.139 0.861 4 C 0.221 3.779 5 N -0.412 5.412 6 C 0.527 3.473 7 O -0.531 6.531 8 N -0.605 5.605 9 C 0.116 3.884 10 C -0.133 4.133 11 C 0.093 3.907 12 O -0.369 6.369 13 C 0.029 3.971 14 C 0.117 3.883 15 N -0.607 5.607 16 C -0.216 4.216 17 H 0.084 0.916 18 C -0.008 4.008 19 N -0.919 5.919 20 Si 0.915 3.085 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.143 3.857 25 C -0.161 4.161 26 C 0.102 3.898 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.254 0.746 39 H 0.031 0.969 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.668 -14.173 6.782 17.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.040 4.040 3 H 0.156 0.844 4 C -0.098 4.098 5 N -0.087 5.087 6 C 0.313 3.687 7 O -0.407 6.407 8 N -0.338 5.338 9 C -0.006 4.006 10 C -0.171 4.171 11 C 0.034 3.966 12 O -0.286 6.286 13 C -0.029 4.029 14 C -0.009 4.009 15 N -0.334 5.334 16 C -0.343 4.343 17 H 0.101 0.899 18 C -0.205 4.205 19 N -0.566 5.566 20 Si 0.745 3.255 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.017 3.983 25 C -0.200 4.200 26 C -0.020 4.020 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.098 0.902 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.791 -15.290 8.175 19.008 hybrid contribution -0.180 1.396 -0.897 1.669 sum -7.970 -13.895 7.278 17.594 Atomic orbital electron populations 1.21799 0.89119 1.04542 1.04636 1.18912 0.99236 1.00145 0.85695 0.84354 1.28098 0.93907 0.93803 0.93998 1.81204 1.07738 1.07946 1.11862 1.19936 0.78098 0.86951 0.83756 1.90768 1.49791 1.15494 1.84597 1.48111 1.61012 1.13780 1.10941 1.21662 0.95369 0.97270 0.86302 1.22016 0.98240 0.94190 1.02645 1.21995 0.90351 0.90158 0.94104 1.87938 1.31842 1.44848 1.64009 1.24783 0.97835 0.87888 0.92409 1.22601 0.96401 0.86293 0.95649 1.45266 1.74720 1.03470 1.09984 1.18956 1.37273 0.84046 0.94025 0.89870 1.24822 1.01500 0.97705 0.96465 1.69841 1.48312 1.26031 1.12394 0.86000 0.77337 0.83104 0.79056 1.20372 1.21609 1.21652 1.22526 0.99166 0.88131 0.88458 1.22517 0.98321 1.00229 0.98883 1.21977 0.97482 0.79761 1.02819 0.90825 0.89999 0.89681 0.90835 0.88476 0.89731 0.90635 0.92111 0.89646 0.94031 0.94160 0.93637 0.95098 0.91100 0.90442 0.89234 0.90193 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.57 8.93 37.16 0.33 -0.24 16 2 C -0.02 -0.10 2.24 -94.56 -0.21 -0.31 16 3 H 0.14 0.50 6.50 -51.93 -0.34 0.17 16 4 C 0.22 2.28 14.02 -20.76 -0.29 1.99 16 5 N -0.41 -5.48 18.54 42.15 0.78 -4.69 16 6 C 0.53 4.92 6.78 -10.99 -0.07 4.84 16 7 O -0.53 -7.16 15.69 5.56 0.09 -7.08 16 8 N -0.61 -4.80 2.97 -172.77 -0.51 -5.31 16 9 C 0.12 0.96 6.42 -3.71 -0.02 0.94 16 10 C -0.13 -1.27 5.73 -26.61 -0.15 -1.42 16 11 C 0.09 1.03 2.56 -26.69 -0.07 0.96 16 12 O -0.37 -5.77 10.05 -35.23 -0.35 -6.12 16 13 C 0.03 0.53 4.61 -26.22 -0.12 0.41 16 14 C 0.12 2.40 8.52 -8.52 -0.07 2.33 16 15 N -0.61 -15.42 3.78 -184.83 -0.70 -16.12 16 16 C -0.22 -5.96 10.75 -15.06 -0.16 -6.12 16 17 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 19 N -0.92 -26.50 11.51 55.49 0.64 -25.87 16 20 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C 0.14 3.27 7.25 -8.52 -0.06 3.21 16 25 C -0.16 -1.51 5.69 -26.61 -0.15 -1.66 16 26 C 0.10 0.62 5.83 -3.71 -0.02 0.60 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.20 7.35 -51.93 -0.38 -0.18 16 30 H 0.07 0.51 8.14 -51.94 -0.42 0.09 16 31 H 0.10 0.91 7.04 -51.92 -0.37 0.54 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.63 7.44 -51.93 -0.39 0.24 16 35 H 0.09 1.44 7.47 -51.93 -0.39 1.05 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.75 7.12 -51.93 -0.37 1.38 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 0.32 5.09 -51.93 -0.26 0.06 16 LS Contribution 361.95 15.07 5.45 5.45 Total: -1.00 -35.06 361.95 -7.49 -42.55 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -6.69 Total: -4.55 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -1.18 Total: 5.20 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.21 Total: -52.00 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.27 Total: -13.20 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.06 -7.49 -42.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093516597.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.861 kcal (2) G-P(sol) polarization free energy of solvation -35.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds