Wall clock time and date at job start Fri Apr 10 2020 17:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46931 * 2 1 4 4 C 1.47203 * 109.47361 * 119.99183 * 2 1 3 5 5 N 2.60800 * 109.47221 * 119.99601 * 2 1 3 6 6 C 1.50698 * 109.47586 * 239.99761 * 2 1 3 7 7 O 1.21282 * 119.99848 * 264.94312 * 6 2 1 8 8 N 1.34771 * 120.00029 * 84.93411 * 6 2 1 9 9 C 1.46926 * 120.63456 * 174.93067 * 8 6 2 10 10 C 1.53191 * 108.77494 * 233.58909 * 9 8 6 11 11 C 1.53037 * 109.31172 * 305.35795 * 10 9 8 12 12 O 1.42904 * 109.46397 * 181.38738 * 11 10 9 13 13 C 1.42894 * 114.00380 * 149.99804 * 12 11 10 14 14 C 1.53490 * 114.20917 * 209.99953 * 13 12 11 15 15 N 1.47066 * 87.99055 * 220.14964 * 14 13 12 16 16 C 1.36931 * 136.06054 * 206.86449 * 15 14 13 17 17 H 1.07999 * 119.99828 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99978 * 179.97438 * 16 15 14 19 19 N 1.31614 * 119.99990 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99788 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47310 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47063 * 120.00344 * 20 18 16 23 23 H 1.48501 * 109.47005 * 239.99860 * 20 18 16 24 24 C 1.47067 * 87.88017 * 27.12065 * 15 14 13 25 25 C 1.53046 * 109.53868 * 61.36553 * 11 10 9 26 26 C 1.46933 * 120.63344 * 354.90392 * 8 6 2 27 27 H 1.09001 * 109.46603 * 181.40219 * 1 2 3 28 28 H 1.08999 * 109.46926 * 301.39594 * 1 2 3 29 29 H 1.08995 * 109.46681 * 61.40022 * 1 2 3 30 30 H 1.08988 * 109.59243 * 113.79466 * 9 8 6 31 31 H 1.09011 * 109.58102 * 353.36620 * 9 8 6 32 32 H 1.08999 * 109.50046 * 185.40787 * 10 9 8 33 33 H 1.08999 * 109.50069 * 65.30842 * 10 9 8 34 34 H 1.09005 * 109.46296 * 301.35918 * 11 10 9 35 35 H 1.08999 * 113.28105 * 343.06969 * 13 12 11 36 36 H 1.09003 * 113.46929 * 105.36886 * 14 13 12 37 37 H 1.09001 * 113.52366 * 334.94047 * 14 13 12 38 38 H 0.97007 * 119.99762 * 180.02562 * 19 18 16 39 39 H 1.08997 * 113.46702 * 87.66190 * 24 15 14 40 40 H 1.09001 * 113.46573 * 218.09998 * 24 15 14 41 41 H 1.09004 * 109.49460 * 58.58640 * 25 11 10 42 42 H 1.08996 * 109.49895 * 178.68291 * 25 11 10 43 43 H 1.09001 * 109.58738 * 246.20275 * 26 8 6 44 44 H 1.09002 * 109.57987 * 6.48242 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0208 -0.6937 1.2020 5 7 2.3994 -1.2293 2.1295 6 6 2.0325 -0.7104 -1.2304 7 8 2.3219 -1.8869 -1.1756 8 7 2.1600 -0.0385 -2.3917 9 6 2.7517 -0.6861 -3.5703 10 6 3.8974 0.1880 -4.0900 11 6 3.3774 1.6044 -4.3459 12 8 4.4359 2.4143 -4.8614 13 6 3.9977 3.4564 -5.7354 14 6 5.0173 3.8420 -6.8160 15 7 4.6435 5.2470 -6.5941 16 6 4.6435 6.3966 -7.3380 17 1 4.9865 6.3772 -8.3619 18 6 4.2027 7.5869 -6.7760 19 7 3.7853 7.6106 -5.5281 20 14 4.2021 9.1550 -7.7911 21 1 4.7156 8.8630 -9.1535 22 1 2.8173 9.6827 -7.8860 23 1 5.0735 10.1662 -7.1405 24 6 4.2758 4.8751 -5.2195 25 6 2.8666 2.2068 -3.0350 26 6 1.7093 1.3556 -2.5034 27 1 -0.3632 -1.0274 0.0251 28 1 -0.3633 0.5354 0.8772 29 1 -0.3632 0.4919 -0.9023 30 1 1.9943 -0.7950 -4.3463 31 1 3.1376 -1.6672 -3.2929 32 1 4.2825 -0.2316 -5.0193 33 1 4.6948 0.2219 -3.3476 34 1 2.5633 1.5671 -5.0697 35 1 2.9848 3.3075 -6.1094 36 1 4.7571 3.4753 -7.8090 37 1 6.0481 3.6184 -6.5411 38 1 3.4769 8.4423 -5.1355 39 1 5.1088 4.9264 -4.5184 40 1 3.3851 5.3868 -4.8549 41 1 3.6738 2.2216 -2.3026 42 1 2.5180 3.2240 -3.2135 43 1 0.8667 1.4131 -3.1925 44 1 1.4048 1.7208 -1.5225 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093516597.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:34 Heat of formation + Delta-G solvation = -13.357041 kcal Electronic energy + Delta-G solvation = -25215.455645 eV Core-core repulsion = 21555.331039 eV Total energy + Delta-G solvation = -3660.124606 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.58459 -40.33931 -38.82766 -37.69843 -36.80380 -34.65259 -34.10958 -32.42844 -31.92846 -29.47083 -26.74474 -26.36640 -25.54000 -24.74553 -24.24837 -22.30922 -21.37974 -20.45169 -18.81825 -18.68226 -18.50528 -17.74437 -16.94161 -16.75364 -16.42108 -15.93842 -15.73529 -15.37384 -15.20819 -15.10162 -14.86576 -14.49169 -14.34968 -14.07333 -13.79609 -13.52101 -13.49660 -13.26734 -13.19187 -13.06645 -12.85262 -12.79712 -12.77908 -12.67206 -12.45640 -12.17068 -12.11840 -11.90762 -11.78347 -11.40125 -11.27984 -10.88353 -10.86526 -10.10182 -9.75799 -8.95527 -7.91481 -5.26327 1.26931 1.48496 1.48819 1.49778 1.59998 1.68040 2.08928 2.43121 2.76753 2.78486 3.30686 3.36345 3.56440 3.77138 3.84853 3.94247 3.96712 4.08906 4.11560 4.16170 4.24730 4.41478 4.44007 4.61284 4.72844 4.81097 4.81753 4.82799 4.88585 4.90983 4.93053 4.94600 5.06688 5.22751 5.26337 5.28005 5.30051 5.43127 5.50513 5.51939 5.90500 6.23614 6.45341 6.53865 6.90484 6.98100 7.58048 8.58314 9.26172 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.025042 B = 0.002645 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.845471 B =10581.607289 C =11262.620598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.011 4.011 3 H 0.175 0.825 4 C 0.241 3.759 5 N -0.474 5.474 6 C 0.526 3.474 7 O -0.580 6.580 8 N -0.600 5.600 9 C 0.119 3.881 10 C -0.124 4.124 11 C 0.081 3.919 12 O -0.382 6.382 13 C 0.072 3.928 14 C 0.113 3.887 15 N -0.638 5.638 16 C -0.231 4.231 17 H 0.087 0.913 18 C -0.065 4.065 19 N -0.950 5.950 20 Si 0.982 3.018 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.294 1.294 24 C 0.141 3.859 25 C -0.160 4.160 26 C 0.104 3.896 27 H 0.059 0.941 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.060 0.940 37 H 0.038 0.962 38 H 0.250 0.750 39 H 0.008 0.992 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.410 -14.016 5.778 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.035 4.035 3 H 0.192 0.808 4 C -0.077 4.077 5 N -0.150 5.150 6 C 0.313 3.687 7 O -0.459 6.459 8 N -0.332 5.332 9 C -0.003 4.003 10 C -0.162 4.162 11 C 0.024 3.976 12 O -0.299 6.299 13 C 0.013 3.987 14 C -0.013 4.013 15 N -0.366 5.366 16 C -0.359 4.359 17 H 0.105 0.895 18 C -0.258 4.258 19 N -0.598 5.598 20 Si 0.810 3.190 21 H -0.189 1.189 22 H -0.214 1.214 23 H -0.221 1.221 24 C 0.015 3.985 25 C -0.198 4.198 26 C -0.017 4.017 27 H 0.078 0.922 28 H 0.118 0.882 29 H 0.129 0.871 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.026 0.974 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.122 0.878 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.532 -15.148 7.152 19.274 hybrid contribution 0.422 1.286 -0.599 1.480 sum -9.110 -13.862 6.553 17.835 Atomic orbital electron populations 1.21893 0.86692 1.04398 1.06838 1.19246 1.00962 1.00776 0.82528 0.80761 1.28853 0.92321 0.92543 0.93982 1.81212 1.09843 1.09889 1.14078 1.20361 0.77310 0.86448 0.84600 1.90757 1.52084 1.17758 1.85339 1.48174 1.60203 1.14369 1.10428 1.21628 0.95474 0.96269 0.86971 1.21932 0.98303 0.93517 1.02464 1.22370 0.89840 0.90135 0.95279 1.87922 1.33958 1.44402 1.63668 1.24124 0.97804 0.86026 0.90734 1.22737 0.96978 0.83981 0.97593 1.45640 1.75250 1.04772 1.10980 1.19344 1.36630 0.85296 0.94598 0.89519 1.25678 1.01713 1.00786 0.97668 1.70015 1.49436 1.26430 1.13915 0.84956 0.77082 0.78869 0.78069 1.18948 1.21355 1.22128 1.22484 0.97251 0.91429 0.87368 1.22467 0.99259 1.00352 0.97742 1.22178 0.96465 0.77827 1.05223 0.92211 0.88200 0.87078 0.88594 0.89787 0.89276 0.92315 0.90293 0.87642 0.92145 0.94408 0.94079 0.97390 0.93411 0.91609 0.90125 0.87753 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.63 8.93 71.98 0.64 0.01 16 2 C -0.01 -0.11 2.24 -13.34 -0.03 -0.14 16 3 H 0.18 0.53 6.50 -2.39 -0.02 0.51 16 4 C 0.24 4.76 14.02 89.44 1.25 6.02 16 5 N -0.47 -12.75 18.54 20.01 0.37 -12.38 16 6 C 0.53 8.77 6.78 87.66 0.59 9.37 16 7 O -0.58 -15.43 15.69 -3.04 -0.05 -15.47 16 8 N -0.60 -7.80 2.97 -818.91 -2.43 -10.24 16 9 C 0.12 1.71 6.42 86.36 0.55 2.26 16 10 C -0.12 -2.15 5.73 30.67 0.18 -1.97 16 11 C 0.08 1.61 2.56 30.62 0.08 1.69 16 12 O -0.38 -11.37 10.05 -148.98 -1.50 -12.86 16 13 C 0.07 2.49 4.61 30.93 0.14 2.63 16 14 C 0.11 4.50 8.52 83.17 0.71 5.21 16 15 N -0.64 -32.50 3.78 -739.16 -2.80 -35.29 16 16 C -0.23 -12.75 10.75 84.03 0.90 -11.85 16 17 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 18 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 19 N -0.95 -55.56 11.51 21.65 0.25 -55.32 16 20 Si 0.98 44.31 29.55 68.60 2.03 46.33 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 24 C 0.14 6.50 7.25 83.17 0.60 7.10 16 25 C -0.16 -2.60 5.69 30.67 0.17 -2.43 16 26 C 0.10 0.85 5.83 86.36 0.50 1.35 16 27 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.11 -0.03 7.35 -2.39 -0.02 -0.05 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.50 7.04 -2.38 -0.02 1.48 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.33 7.44 -2.38 -0.02 1.31 16 35 H 0.11 3.26 7.47 -2.39 -0.02 3.24 16 36 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.05 2.40 7.12 -2.39 -0.02 2.38 16 41 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.12 0.23 5.09 -2.39 -0.01 0.22 16 Total: -1.00 -79.54 361.95 3.65 -75.90 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: 1.00 Total: 3.22 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 6.77 Total: 16.11 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -4.61 Total: -113.22 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -1.54 Total: -28.34 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -79.54 3.65 -75.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093516597.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.540 kcal (2) G-P(sol) polarization free energy of solvation -79.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds