Wall clock time and date at job start Fri Apr 10 2020 17:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 120.00100 * 2 1 4 4 N 1.34773 * 119.99826 * 180.02562 * 2 1 3 5 5 C 1.47588 * 134.49093 * 179.97438 * 4 2 1 6 6 C 1.53944 * 86.11560 * 155.35862 * 5 4 2 7 7 C 1.50697 * 113.73840 * 137.95278 * 6 5 4 8 8 O 1.21282 * 120.00379 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99991 * 180.02562 * 7 6 5 10 10 C 1.46492 * 120.00319 * 179.72408 * 9 7 6 11 11 H 1.09000 * 110.55636 * 32.78412 * 10 9 7 12 12 C 1.54851 * 110.62909 * 155.68438 * 10 9 7 13 13 C 1.55841 * 103.44856 * 118.49182 * 12 10 9 14 14 H 1.08996 * 115.56453 * 159.56725 * 13 12 10 15 15 C 1.55844 * 105.06067 * 288.17875 * 13 12 10 16 16 C 1.54849 * 103.44784 * 71.82493 * 15 13 12 17 17 C 1.55838 * 103.44720 * 359.97438 * 16 15 13 18 18 H 1.08997 * 115.56358 * 159.56217 * 17 16 15 19 19 N 1.50238 * 101.04951 * 32.94142 * 17 16 15 20 20 C 1.36941 * 130.84252 * 126.00494 * 19 17 16 21 21 H 1.08003 * 119.99519 * 9.85828 * 20 19 17 22 22 C 1.38810 * 120.00131 * 189.85071 * 20 19 17 23 23 N 1.31615 * 120.00292 * 8.83233 * 22 20 19 24 24 Si 1.86802 * 119.99858 * 188.82795 * 22 20 19 25 25 H 1.48507 * 109.46863 * 84.99197 * 24 22 20 26 26 H 1.48499 * 109.47193 * 204.98951 * 24 22 20 27 27 H 1.48503 * 109.47512 * 324.99465 * 24 22 20 28 28 C 1.47574 * 134.49564 * 359.97438 * 4 2 1 29 29 H 1.09000 * 109.46701 * 270.00292 * 1 2 3 30 30 H 1.09003 * 109.47034 * 29.99613 * 1 2 3 31 31 H 1.08998 * 109.47192 * 149.99718 * 1 2 3 32 32 H 1.08998 * 113.77054 * 41.05742 * 5 4 2 33 33 H 1.09002 * 113.76986 * 269.65976 * 5 4 2 34 34 H 1.08998 * 113.74410 * 269.15274 * 6 5 4 35 35 H 0.97001 * 119.99611 * 359.97438 * 9 7 6 36 36 H 1.09001 * 110.62584 * 236.97878 * 12 10 9 37 37 H 1.08998 * 110.62457 * 359.83598 * 12 10 9 38 38 H 1.09003 * 110.62693 * 190.31538 * 15 13 12 39 39 H 1.09004 * 110.62830 * 313.33015 * 15 13 12 40 40 H 1.09001 * 110.62846 * 118.49367 * 16 15 13 41 41 H 1.09007 * 110.62383 * 241.50604 * 16 15 13 42 42 H 0.96999 * 120.00379 * 179.97438 * 23 22 20 43 43 H 1.09002 * 113.77161 * 90.33764 * 28 4 2 44 44 H 1.09006 * 113.76753 * 318.94240 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6097 -1.5365 -0.0012 6 6 3.1596 -2.8622 0.6391 7 6 3.8593 -4.0742 0.0801 8 8 4.6904 -3.9455 -0.7937 9 7 3.5607 -5.3015 0.5505 10 6 4.2364 -6.4803 0.0029 11 1 5.2574 -6.2349 -0.2894 12 6 4.2264 -7.6404 1.0285 13 6 3.4250 -8.7611 0.3003 14 1 3.5820 -9.7719 0.6766 15 6 1.9472 -8.2663 0.2985 16 6 1.9571 -7.1062 -0.7272 17 6 3.4397 -7.0576 -1.2050 18 1 3.6098 -6.5619 -2.1607 19 7 3.8146 -8.5105 -1.1286 20 6 4.3469 -9.3488 -2.0716 21 1 4.7100 -8.9484 -3.0066 22 6 4.4199 -10.7130 -1.8255 23 7 3.8245 -11.2239 -0.7688 24 14 5.3631 -11.8236 -2.9944 25 1 6.8013 -11.8240 -2.6245 26 1 4.8282 -13.2060 -2.9035 27 1 5.2097 -11.3238 -4.3844 28 6 1.7863 -2.5892 -0.0007 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 4.2236 -0.9184 0.6539 33 1 4.0332 -1.6520 -0.9989 34 1 3.1498 -2.8422 1.7289 35 1 2.8957 -5.4045 1.2491 36 1 5.2424 -7.9722 1.2427 37 1 3.7213 -7.3377 1.9457 38 1 1.2764 -9.0612 -0.0274 39 1 1.6626 -7.9032 1.2861 40 1 1.2913 -7.3258 -1.5618 41 1 1.6774 -6.1678 -0.2482 42 1 3.8752 -12.1772 -0.5970 43 1 1.6741 -3.0140 -0.9983 44 1 0.9442 -2.8116 0.6548 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095348815.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:40 Heat of formation + Delta-G solvation = 14.679066 kcal Electronic energy + Delta-G solvation = -25861.879834 eV Core-core repulsion = 22202.970964 eV Total energy + Delta-G solvation = -3658.908869 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.99211 -39.76486 -38.60016 -37.28189 -34.03254 -32.38352 -31.43190 -29.59308 -29.15941 -28.85649 -27.49834 -26.45839 -24.46197 -23.45091 -21.36499 -20.34720 -19.59465 -19.25646 -18.60984 -17.73436 -17.23141 -16.95774 -16.14976 -15.78141 -15.23671 -14.99293 -14.85229 -14.56652 -14.14172 -13.82842 -13.45671 -13.23424 -12.93673 -12.78118 -12.66141 -12.36884 -12.30109 -12.16706 -11.80256 -11.57778 -11.31049 -11.08454 -10.98642 -10.93991 -10.86862 -10.27825 -10.22167 -10.12095 -9.99818 -9.72431 -9.50263 -9.29555 -9.01363 -8.90315 -8.60050 -6.94171 -5.80612 -3.15876 2.31666 2.48063 2.60890 3.32145 3.37756 3.43265 3.44127 3.97979 4.13683 4.41557 4.56823 4.71222 4.87722 4.88947 5.00826 5.06257 5.13606 5.17955 5.30981 5.33742 5.38053 5.48100 5.58398 5.73017 5.77334 5.78498 5.90676 5.99959 6.04233 6.21084 6.25838 6.47297 6.50911 6.58841 6.73946 6.89763 6.93478 7.22149 7.35595 7.48898 7.63245 7.74116 7.85567 8.06129 8.34384 9.03526 9.67449 10.49222 11.31808 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.030666 B = 0.002970 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.858224 B = 9425.689061 C = 9607.640395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.534 3.466 3 O -0.548 6.548 4 N -0.648 5.648 5 C 0.129 3.871 6 C -0.151 4.151 7 C 0.519 3.481 8 O -0.537 6.537 9 N -0.707 5.707 10 C 0.126 3.874 11 H 0.085 0.915 12 C -0.144 4.144 13 C 0.162 3.838 14 H 0.140 0.860 15 C -0.132 4.132 16 C -0.131 4.131 17 C 0.128 3.872 18 H 0.085 0.915 19 N -0.587 5.587 20 C -0.216 4.216 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.918 5.918 24 Si 0.913 3.087 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.119 3.881 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.124 0.876 35 H 0.396 0.604 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.254 0.746 43 H 0.095 0.905 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.825 14.570 7.003 17.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.325 3.675 3 O -0.426 6.426 4 N -0.385 5.385 5 C 0.006 3.994 6 C -0.174 4.174 7 C 0.303 3.697 8 O -0.413 6.413 9 N -0.357 5.357 10 C 0.021 3.979 11 H 0.103 0.897 12 C -0.184 4.184 13 C 0.055 3.945 14 H 0.157 0.843 15 C -0.172 4.172 16 C -0.171 4.171 17 C 0.019 3.981 18 H 0.103 0.897 19 N -0.308 5.308 20 C -0.344 4.344 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.565 5.565 24 Si 0.744 3.256 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.004 4.004 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.142 0.858 35 H 0.231 0.769 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.113 0.887 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.926 15.098 6.232 17.741 hybrid contribution 0.028 -0.739 -0.226 0.774 sum -6.898 14.359 6.006 17.024 Atomic orbital electron populations 1.21841 0.91188 1.04906 1.04765 1.20517 0.90260 0.81637 0.75125 1.90734 1.70880 1.30457 1.50514 1.50074 1.09247 1.05391 1.73754 1.23046 0.83277 0.90751 1.02281 1.23363 0.97111 0.94307 1.02580 1.20074 0.82841 0.84107 0.82717 1.90732 1.33612 1.86077 1.30907 1.46250 1.42747 1.06193 1.40520 1.22675 0.96856 0.82928 0.95476 0.89678 1.23328 1.01753 0.97101 0.96257 1.23356 0.89269 0.97822 0.84073 0.84279 1.22999 1.00576 0.97368 0.96229 1.22914 0.98240 0.97121 0.98784 1.23163 0.92464 0.87296 0.95213 0.89712 1.46414 1.71827 1.03997 1.08543 1.19015 1.31399 0.87384 0.96559 0.90428 1.24742 1.00871 0.96252 0.98595 1.69662 1.46421 1.11725 1.28741 0.86109 0.79561 0.79864 0.80073 1.21544 1.21719 1.20727 1.23147 0.96316 0.79236 1.01683 0.88815 0.88782 0.90157 0.89523 0.87967 0.85816 0.76904 0.91738 0.92531 0.92318 0.93791 0.93018 0.93235 0.93589 0.88661 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.14 36.01 0.37 -0.72 16 2 C 0.53 5.87 8.17 -10.99 -0.09 5.78 16 3 O -0.55 -8.50 17.83 5.55 0.10 -8.40 16 4 N -0.65 -6.31 3.61 -178.42 -0.64 -6.95 16 5 C 0.13 1.33 8.18 -2.97 -0.02 1.31 16 6 C -0.15 -1.29 4.34 -90.85 -0.39 -1.68 16 7 C 0.52 6.45 7.36 -10.98 -0.08 6.37 16 8 O -0.54 -9.08 15.55 5.56 0.09 -9.00 16 9 N -0.71 -8.65 3.72 -51.43 -0.19 -8.84 16 10 C 0.13 2.12 3.15 -65.47 -0.21 1.92 16 11 H 0.09 1.64 7.57 -51.93 -0.39 1.25 16 12 C -0.14 -2.48 6.19 -24.24 -0.15 -2.63 16 13 C 0.16 3.42 4.60 -62.82 -0.29 3.13 16 14 H 0.14 3.41 5.93 -51.93 -0.31 3.10 16 15 C -0.13 -2.38 6.44 -24.24 -0.16 -2.54 16 16 C -0.13 -2.19 6.32 -24.24 -0.15 -2.34 16 17 C 0.13 2.48 5.35 -62.84 -0.34 2.14 16 18 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 19 N -0.59 -13.96 2.97 -145.88 -0.43 -14.39 16 20 C -0.22 -5.78 10.55 -15.06 -0.16 -5.94 16 21 H 0.08 2.06 7.84 -52.48 -0.41 1.65 16 22 C -0.01 -0.23 5.47 -17.43 -0.10 -0.32 16 23 N -0.92 -25.46 10.75 55.49 0.60 -24.86 16 24 Si 0.91 21.56 29.56 -169.99 -5.03 16.54 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 C 0.12 0.86 7.94 -2.98 -0.02 0.84 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.39 7.84 -51.93 -0.41 -0.02 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 1.21 7.41 -51.93 -0.38 0.82 16 34 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.40 3.74 7.90 -40.82 -0.32 3.41 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 0.79 7.40 -51.93 -0.38 0.41 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.04 0.65 7.82 -51.93 -0.41 0.24 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.65 6.38 -51.93 -0.33 0.32 16 42 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.10 0.73 8.09 -51.93 -0.42 0.31 16 44 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 355.29 15.07 5.35 5.35 Total: -1.00 -33.35 355.29 -8.66 -42.01 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.71 Total: 3.24 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -1.79 Total: 5.31 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.67 Total: -55.05 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.19 Total: -17.40 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.35 -8.66 -42.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095348815.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.684 kcal (2) G-P(sol) polarization free energy of solvation -33.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds