Wall clock time and date at job start Fri Apr 10 2020 17:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46764 * 124.34792 * 2 1 4 4 C 1.54485 * 105.46993 * 196.98949 * 3 2 1 5 5 C 1.54629 * 101.76531 * 334.58505 * 4 3 2 6 6 H 1.08994 * 110.60275 * 143.53268 * 5 4 3 7 7 C 1.50703 * 110.48410 * 266.11752 * 5 4 3 8 8 O 1.21280 * 120.00274 * 356.23218 * 7 5 4 9 9 N 1.34780 * 119.99871 * 176.22485 * 7 5 4 10 10 C 1.46506 * 119.99889 * 179.97438 * 9 7 5 11 11 H 1.09002 * 110.68016 * 37.87851 * 10 9 7 12 12 C 1.55476 * 110.60938 * 161.01939 * 10 9 7 13 13 C 1.55842 * 103.32734 * 118.41460 * 12 10 9 14 14 H 1.09002 * 116.12614 * 159.23526 * 13 12 10 15 15 C 1.55393 * 105.04760 * 288.04236 * 13 12 10 16 16 C 1.54855 * 103.48214 * 72.07450 * 15 13 12 17 17 C 1.55835 * 103.44642 * 359.87325 * 16 15 13 18 18 H 1.09003 * 115.56137 * 158.81231 * 17 16 15 19 19 N 1.50234 * 101.05417 * 32.94172 * 17 16 15 20 20 C 1.36932 * 130.84285 * 125.99813 * 19 17 16 21 21 H 1.08002 * 119.99922 * 348.89806 * 20 19 17 22 22 C 1.38819 * 120.00149 * 168.90305 * 20 19 17 23 23 N 1.31616 * 119.99935 * 158.98577 * 22 20 19 24 24 Si 1.86791 * 119.99866 * 338.98712 * 22 20 19 25 25 H 1.48500 * 109.47191 * 90.00049 * 24 22 20 26 26 H 1.48505 * 109.47320 * 329.99992 * 24 22 20 27 27 H 1.48505 * 109.47179 * 209.99875 * 24 22 20 28 28 C 1.34418 * 124.34638 * 179.97438 * 2 1 3 29 29 O 1.21275 * 124.94314 * 359.66220 * 28 2 1 30 30 H 1.08995 * 109.47119 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47115 * 300.05360 * 1 2 3 32 32 H 1.09005 * 109.46515 * 60.05359 * 1 2 3 33 33 H 1.08998 * 110.24498 * 315.98711 * 3 2 1 34 34 H 1.08992 * 110.24946 * 77.90552 * 3 2 1 35 35 H 1.08995 * 110.96852 * 216.46491 * 4 3 2 36 36 H 1.08995 * 110.96918 * 92.69795 * 4 3 2 37 37 H 0.97001 * 119.99996 * 0.02562 * 9 7 5 38 38 H 1.09005 * 110.60613 * 0.02562 * 12 10 9 39 39 H 1.08998 * 110.89792 * 236.96816 * 12 10 9 40 40 H 1.08999 * 110.71469 * 313.52031 * 15 13 12 41 41 H 1.08995 * 110.50035 * 190.52763 * 15 13 12 42 42 H 1.08998 * 110.62357 * 241.38188 * 16 15 13 43 43 H 1.08996 * 110.62383 * 118.36707 * 16 15 13 44 44 H 0.97009 * 119.99925 * 5.04674 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7012 0.7485 -0.4350 5 6 3.6898 -0.7379 -0.0091 6 1 4.2333 -1.3478 -0.7306 7 6 4.2833 -0.8967 1.3670 8 8 4.7472 0.0651 1.9421 9 7 4.2986 -2.1076 1.9587 10 6 4.8761 -2.2621 3.2962 11 1 4.6410 -1.3990 3.9191 12 6 4.3736 -3.5747 3.9610 13 6 5.6832 -4.3908 4.1796 14 1 5.6380 -5.1783 4.9319 15 6 6.1144 -4.8498 2.7590 16 6 6.6176 -3.5444 2.0951 17 6 6.4179 -2.4717 3.2076 18 1 7.0198 -1.5688 3.1039 19 7 6.6690 -3.2882 4.4435 20 6 7.5342 -3.0912 5.4864 21 1 8.3006 -2.3335 5.4165 22 6 7.4263 -3.8655 6.6335 23 7 8.4558 -3.9875 7.4444 24 14 5.8200 -4.7343 7.0262 25 1 5.8260 -6.0869 6.4132 26 1 4.6852 -3.9479 6.4790 27 1 5.6715 -4.8587 8.4985 28 6 2.2234 -1.1098 0.0005 29 8 1.7946 -2.2442 0.0069 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5147 0.8895 32 1 -0.3632 0.5130 -0.8905 33 1 1.8987 1.9381 -0.7106 34 1 2.3291 1.6441 0.9999 35 1 4.4754 1.3010 0.0974 36 1 3.8274 0.8442 -1.5134 37 1 3.9278 -2.8769 1.4986 38 1 3.6963 -4.1078 3.2937 39 1 3.8874 -3.3664 4.9140 40 1 5.2647 -5.2566 2.2108 41 1 6.9183 -5.5830 2.8224 42 1 6.0175 -3.3039 1.2175 43 1 7.6711 -3.6304 1.8292 44 1 9.2654 -3.4790 7.2802 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095889276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:59 Heat of formation + Delta-G solvation = -6.761104 kcal Electronic energy + Delta-G solvation = -26684.584311 eV Core-core repulsion = 23024.745726 eV Total energy + Delta-G solvation = -3659.838585 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.23605 -39.90350 -38.38246 -36.64833 -34.08269 -33.11527 -32.46878 -29.74570 -29.33131 -28.79842 -27.52369 -27.03022 -23.78488 -22.86275 -21.54001 -20.82798 -20.13588 -19.68597 -18.80358 -17.95692 -17.29957 -17.04841 -16.19071 -15.88402 -15.73286 -15.36068 -14.93280 -14.27446 -14.09613 -13.89019 -13.55202 -13.38960 -13.19587 -13.09148 -12.89855 -12.64906 -12.47575 -12.01431 -11.92964 -11.74879 -11.51105 -11.47537 -11.17175 -11.10136 -10.66574 -10.30401 -10.22967 -10.08775 -9.73285 -9.67811 -9.41723 -9.14689 -9.07290 -8.81011 -8.56403 -7.18708 -6.29057 -3.16848 2.09493 2.51244 2.78804 3.29215 3.36150 3.50161 3.66613 3.94869 4.11833 4.48190 4.59729 4.66885 4.77158 4.86323 4.93564 5.03422 5.16502 5.21988 5.23953 5.26298 5.37339 5.43699 5.55812 5.66014 5.67513 5.74038 5.79147 5.87854 5.98235 6.02055 6.10918 6.27415 6.32660 6.42014 6.47558 6.63553 6.68734 6.72499 6.89717 6.93389 7.44333 7.63101 7.78918 8.27243 8.30792 9.01405 9.54847 10.34484 11.19847 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.024911 B = 0.003923 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.747334 B = 7135.939976 C = 7341.704095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.620 5.620 3 C 0.101 3.899 4 C -0.118 4.118 5 C -0.151 4.151 6 H 0.132 0.868 7 C 0.527 3.473 8 O -0.531 6.531 9 N -0.705 5.705 10 C 0.128 3.872 11 H 0.087 0.913 12 C -0.144 4.144 13 C 0.118 3.882 14 H 0.097 0.903 15 C -0.130 4.130 16 C -0.129 4.129 17 C 0.134 3.866 18 H 0.092 0.908 19 N -0.601 5.601 20 C -0.309 4.309 21 H 0.078 0.922 22 C -0.023 4.023 23 N -0.927 5.927 24 Si 1.060 2.940 25 H -0.295 1.295 26 H -0.276 1.276 27 H -0.300 1.300 28 C 0.528 3.472 29 O -0.522 6.522 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.088 0.912 37 H 0.402 0.598 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.823 8.073 -18.982 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.355 5.355 3 C -0.022 4.022 4 C -0.156 4.156 5 C -0.175 4.175 6 H 0.150 0.850 7 C 0.310 3.690 8 O -0.408 6.408 9 N -0.355 5.355 10 C 0.022 3.978 11 H 0.105 0.895 12 C -0.183 4.183 13 C 0.012 3.988 14 H 0.114 0.886 15 C -0.170 4.170 16 C -0.169 4.169 17 C 0.025 3.975 18 H 0.110 0.890 19 N -0.324 5.324 20 C -0.436 4.436 21 H 0.096 0.904 22 C -0.223 4.223 23 N -0.568 5.568 24 Si 0.894 3.106 25 H -0.224 1.224 26 H -0.203 1.203 27 H -0.229 1.229 28 C 0.315 3.685 29 O -0.398 6.398 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.237 0.763 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.375 7.180 -17.272 24.213 hybrid contribution 0.496 0.725 -1.363 1.621 sum -14.879 7.905 -18.635 25.122 Atomic orbital electron populations 1.21592 0.77660 1.03935 1.01661 1.48118 1.06735 1.07428 1.73203 1.22173 0.90278 0.87078 1.02651 1.22594 0.97718 0.92892 1.02417 1.22192 0.95624 1.01131 0.98591 0.84988 1.19625 0.79500 0.83640 0.86195 1.90710 1.46875 1.38751 1.64423 1.46248 1.60299 1.09848 1.19138 1.22766 0.95376 0.98391 0.81219 0.89483 1.23512 0.98379 0.95816 1.00627 1.23113 0.88915 0.91822 0.94984 0.88572 1.22856 0.99866 0.97240 0.97023 1.22908 1.00184 0.96265 0.97535 1.23183 0.92235 0.94078 0.87962 0.88963 1.46841 1.43976 1.20379 1.21215 1.20092 1.07921 1.22371 0.93230 0.90422 1.25795 1.03780 0.99733 0.92984 1.70911 1.03491 1.39547 1.42878 0.83900 0.76394 0.75260 0.75035 1.22424 1.20253 1.22853 1.20365 0.88063 0.84629 0.75482 1.90745 1.78138 1.20770 1.50133 0.89785 0.91846 0.91886 0.89990 0.90385 0.86939 0.89316 0.76251 0.91611 0.90419 0.92570 0.92059 0.92530 0.92431 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 11.14 59.85 0.67 1.34 16 2 N -0.62 -5.87 3.33 -180.29 -0.60 -6.47 16 3 C 0.10 0.75 7.35 -3.12 -0.02 0.73 16 4 C -0.12 -0.93 6.53 -25.10 -0.16 -1.09 16 5 C -0.15 -1.57 3.33 -91.78 -0.31 -1.88 16 6 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 7 C 0.53 7.48 7.18 -10.98 -0.08 7.41 16 8 O -0.53 -9.13 15.20 5.56 0.08 -9.04 16 9 N -0.70 -10.40 3.56 -51.07 -0.18 -10.58 16 10 C 0.13 2.33 3.09 -65.09 -0.20 2.13 16 11 H 0.09 1.76 7.73 -51.93 -0.40 1.36 16 12 C -0.14 -2.62 6.02 -23.90 -0.14 -2.76 16 13 C 0.12 2.48 3.57 -63.05 -0.22 2.26 16 14 H 0.10 2.15 3.58 -51.93 -0.19 1.96 16 15 C -0.13 -2.33 6.42 -24.48 -0.16 -2.48 16 16 C -0.13 -2.26 6.33 -24.24 -0.15 -2.41 16 17 C 0.13 2.73 5.34 -62.81 -0.34 2.40 16 18 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 19 N -0.60 -14.60 2.82 -146.09 -0.41 -15.02 16 20 C -0.31 -8.87 10.80 -15.06 -0.16 -9.04 16 21 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 22 C -0.02 -0.68 5.49 -17.43 -0.10 -0.78 16 23 N -0.93 -29.29 13.70 55.49 0.76 -28.53 16 24 Si 1.06 26.37 25.04 -169.99 -4.26 22.12 16 25 H -0.29 -6.97 6.57 56.52 0.37 -6.59 16 26 H -0.28 -6.29 4.89 56.52 0.28 -6.01 16 27 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 28 C 0.53 6.24 7.24 -10.86 -0.08 6.16 16 29 O -0.52 -7.66 17.17 5.56 0.10 -7.56 16 30 H 0.08 0.70 7.53 -51.93 -0.39 0.31 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.11 1.01 6.91 -51.93 -0.36 0.65 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.40 5.40 7.83 -40.82 -0.32 5.08 16 38 H 0.07 1.01 7.33 -51.93 -0.38 0.63 16 39 H 0.08 1.49 6.40 -51.93 -0.33 1.16 16 40 H 0.06 0.84 7.80 -51.93 -0.41 0.43 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 0.84 6.50 -51.93 -0.34 0.50 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.26 8.20 8.73 -40.82 -0.36 7.84 16 LS Contribution 340.90 15.07 5.14 5.14 Total: -1.00 -34.75 340.90 -7.48 -42.22 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.65 Total: 5.73 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -1.46 Total: 1.99 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.43 Total: -60.59 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: 0.18 Total: -16.60 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -4.26 Total: 22.12 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.75 -7.48 -42.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095889276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.464 kcal (2) G-P(sol) polarization free energy of solvation -34.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds