Wall clock time and date at job start Fri Apr 10 2020 17:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46767 * 124.34555 * 2 1 4 4 C 1.54661 * 105.38019 * 162.85758 * 3 2 1 5 5 C 1.54634 * 101.68374 * 25.76340 * 4 3 2 6 6 H 1.08998 * 110.59934 * 93.72297 * 5 4 3 7 7 C 1.50704 * 110.48544 * 216.31112 * 5 4 3 8 8 O 1.21278 * 119.99834 * 356.22861 * 7 5 4 9 9 N 1.34774 * 119.99784 * 176.23001 * 7 5 4 10 10 C 1.46498 * 119.99779 * 179.97438 * 9 7 5 11 11 H 1.09002 * 110.55963 * 34.29974 * 10 9 7 12 12 C 1.54851 * 110.63090 * 271.39984 * 10 9 7 13 13 C 1.55843 * 103.44734 * 241.51107 * 12 10 9 14 14 H 1.09000 * 115.55972 * 159.56603 * 13 12 10 15 15 C 1.55845 * 105.06175 * 288.17621 * 13 12 10 16 16 C 1.54850 * 103.44791 * 71.82651 * 15 13 12 17 17 C 1.55763 * 103.59366 * 359.93617 * 16 15 13 18 18 H 1.09004 * 115.64767 * 159.69765 * 17 16 15 19 19 N 1.50239 * 101.04773 * 32.93442 * 13 12 10 20 20 C 1.36940 * 130.83480 * 126.01362 * 19 13 12 21 21 H 1.08000 * 119.99786 * 180.02562 * 20 19 13 22 22 C 1.38810 * 120.00107 * 0.03015 * 20 19 13 23 23 N 1.31624 * 119.99948 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00161 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47388 * 89.99306 * 24 22 20 26 26 H 1.48507 * 109.47335 * 209.99334 * 24 22 20 27 27 H 1.48496 * 109.47233 * 329.99482 * 24 22 20 28 28 C 1.34414 * 124.34903 * 180.30032 * 2 1 3 29 29 O 1.21278 * 124.94295 * 0.42988 * 28 2 1 30 30 H 1.09001 * 109.47060 * 179.72990 * 1 2 3 31 31 H 1.09004 * 109.47073 * 299.72478 * 1 2 3 32 32 H 1.09000 * 109.47212 * 59.72561 * 1 2 3 33 33 H 1.08997 * 110.24165 * 281.98114 * 3 2 1 34 34 H 1.08996 * 110.24976 * 43.98254 * 3 2 1 35 35 H 1.08998 * 111.19008 * 267.59570 * 4 3 2 36 36 H 1.09000 * 110.85477 * 143.78464 * 4 3 2 37 37 H 0.96995 * 120.00410 * 0.02562 * 9 7 5 38 38 H 1.09004 * 110.62599 * 0.02562 * 12 10 9 39 39 H 1.09003 * 110.62495 * 122.86029 * 12 10 9 40 40 H 1.09007 * 110.62260 * 190.31727 * 15 13 12 41 41 H 1.09003 * 110.62583 * 313.32955 * 15 13 12 42 42 H 1.08998 * 110.62778 * 118.49256 * 16 15 13 43 43 H 1.09000 * 110.62268 * 241.35082 * 16 15 13 44 44 H 0.97001 * 120.00172 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7010 0.7465 0.4395 5 6 3.6898 -0.7378 0.0062 6 1 4.1200 -0.8500 -0.9890 7 6 4.4404 -1.5838 1.0023 8 8 5.0039 -1.0600 1.9398 9 7 4.4853 -2.9222 0.8511 10 6 5.2154 -3.7445 1.8191 11 1 5.1387 -3.3175 2.8191 12 6 6.6992 -3.8913 1.4011 13 6 6.8658 -5.4261 1.1889 14 1 7.7111 -5.7262 0.5695 15 6 6.8305 -6.0393 2.6212 16 6 5.3467 -5.8926 3.0392 17 6 4.6847 -5.2097 1.8057 18 1 3.6025 -5.3172 1.7312 19 7 5.5005 -5.7968 0.6833 20 6 5.1155 -6.4632 -0.4494 21 1 4.0675 -6.6372 -0.6436 22 6 6.0723 -6.9152 -1.3478 23 7 7.3495 -6.7028 -1.1112 24 14 5.5472 -7.8249 -2.8925 25 1 5.3336 -6.8504 -3.9925 26 1 6.6071 -8.7887 -3.2839 27 1 4.2835 -8.5589 -2.6292 28 6 2.2235 -1.1097 -0.0058 29 8 1.7946 -2.2441 -0.0192 30 1 -0.3633 -1.0277 -0.0048 31 1 -0.3633 0.5096 0.8925 32 1 -0.3634 0.5181 -0.8875 33 1 2.3306 1.6429 -1.0004 34 1 1.8984 1.9384 0.7101 35 1 3.8269 0.8369 1.5185 36 1 4.4758 1.3014 -0.0895 37 1 4.0350 -3.3411 0.1011 38 1 6.8920 -3.3518 0.4738 39 1 7.3582 -3.5370 2.1938 40 1 7.1205 -7.0898 2.5964 41 1 7.4768 -5.4773 3.2955 42 1 4.9008 -6.8703 3.2218 43 1 5.2574 -5.2602 3.9224 44 1 8.0182 -7.0183 -1.7392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097673180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:38 Heat of formation + Delta-G solvation = -18.568607 kcal Electronic energy + Delta-G solvation = -26565.792218 eV Core-core repulsion = 22905.441621 eV Total energy + Delta-G solvation = -3660.350597 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.93618 -39.40697 -38.10518 -36.52275 -33.68736 -32.95298 -32.43303 -29.08953 -29.00774 -28.35808 -27.24142 -26.84614 -24.15854 -22.81736 -21.22663 -20.31825 -19.75186 -19.35554 -18.54505 -17.32630 -17.01800 -16.86075 -16.29538 -15.67521 -15.24478 -14.76792 -14.36780 -14.10041 -13.89304 -13.86514 -13.42620 -13.30862 -13.11954 -12.75342 -12.63993 -12.34358 -12.02480 -11.84746 -11.77522 -11.25272 -11.18809 -11.06671 -10.87884 -10.85600 -10.46265 -10.30270 -10.04809 -10.01342 -9.85347 -9.67249 -9.19593 -9.10493 -8.94596 -8.91421 -8.37776 -6.89354 -5.69433 -3.07627 2.34313 2.68819 3.04248 3.40349 3.45913 3.47404 3.62721 4.12617 4.27666 4.45762 4.74376 4.76936 5.04497 5.08473 5.13132 5.17350 5.30116 5.33072 5.42630 5.49080 5.65914 5.72573 5.76526 5.91956 5.93862 6.10201 6.15807 6.19949 6.25740 6.36029 6.47657 6.54152 6.67600 6.79120 6.83200 6.87918 7.00271 7.17262 7.36562 7.54012 7.83893 7.97716 8.06683 8.20251 8.62482 9.13225 9.75558 10.56922 11.39975 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.004580 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.333289 B = 6111.901542 C = 7071.405869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.625 5.625 3 C 0.102 3.898 4 C -0.114 4.114 5 C -0.151 4.151 6 H 0.134 0.866 7 C 0.527 3.473 8 O -0.550 6.550 9 N -0.689 5.689 10 C 0.128 3.872 11 H 0.077 0.923 12 C -0.142 4.142 13 C 0.156 3.844 14 H 0.152 0.848 15 C -0.139 4.139 16 C -0.128 4.128 17 C 0.126 3.874 18 H 0.090 0.910 19 N -0.590 5.590 20 C -0.210 4.210 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.921 5.921 24 Si 0.914 3.086 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.527 3.473 29 O -0.511 6.511 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.410 0.590 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.748 15.616 3.057 18.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.360 5.360 3 C -0.021 4.021 4 C -0.152 4.152 5 C -0.175 4.175 6 H 0.152 0.848 7 C 0.310 3.690 8 O -0.429 6.429 9 N -0.338 5.338 10 C 0.022 3.978 11 H 0.095 0.905 12 C -0.183 4.183 13 C 0.049 3.951 14 H 0.169 0.831 15 C -0.178 4.178 16 C -0.167 4.167 17 C 0.017 3.983 18 H 0.108 0.892 19 N -0.311 5.311 20 C -0.338 4.338 21 H 0.096 0.904 22 C -0.207 4.207 23 N -0.570 5.570 24 Si 0.745 3.255 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C 0.313 3.687 29 O -0.386 6.386 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.246 0.754 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.626 15.157 3.419 17.772 hybrid contribution -0.542 -0.511 -1.258 1.462 sum -9.168 14.646 2.161 17.414 Atomic orbital electron populations 1.21567 0.77808 1.03969 1.01390 1.48075 1.06571 1.07289 1.74071 1.22199 0.90645 0.87321 1.01918 1.22601 0.95997 0.92117 1.04524 1.22195 0.94796 0.97747 1.02813 0.84826 1.19610 0.80793 0.83068 0.85496 1.90652 1.47097 1.72651 1.32522 1.45998 1.52415 1.05541 1.29804 1.22647 0.92602 0.91600 0.90931 0.90483 1.23463 0.94177 1.00847 0.99764 1.23691 0.91652 0.88695 0.91023 0.83137 1.23068 0.94739 1.00633 0.99362 1.22856 0.97394 0.99720 0.96775 1.23223 0.95375 0.90130 0.89548 0.89237 1.46613 1.01006 1.63582 1.19873 1.19043 0.92426 1.27164 0.95189 0.90372 1.24680 0.95212 1.01727 0.99056 1.69490 0.99162 1.51456 1.36854 0.86069 0.77251 0.79164 0.82992 1.21786 1.21754 1.20801 1.20401 0.88096 0.84674 0.75547 1.90786 1.77956 1.20621 1.49198 0.89761 0.92051 0.92036 0.90821 0.90075 0.88094 0.88634 0.75427 0.92289 0.92814 0.92620 0.93344 0.92449 0.93064 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 11.14 59.85 0.67 1.45 16 2 N -0.62 -6.65 3.33 -180.17 -0.60 -7.25 16 3 C 0.10 0.77 7.36 -3.02 -0.02 0.75 16 4 C -0.11 -1.10 6.46 -25.00 -0.16 -1.26 16 5 C -0.15 -1.98 3.33 -91.78 -0.31 -2.28 16 6 H 0.13 1.55 8.14 -51.93 -0.42 1.13 16 7 C 0.53 9.12 7.16 -10.98 -0.08 9.04 16 8 O -0.55 -10.67 15.21 5.56 0.08 -10.58 16 9 N -0.69 -13.03 4.78 -51.40 -0.25 -13.28 16 10 C 0.13 2.55 2.75 -65.44 -0.18 2.37 16 11 H 0.08 1.52 7.30 -51.93 -0.38 1.14 16 12 C -0.14 -2.99 6.22 -24.24 -0.15 -3.14 16 13 C 0.16 3.64 4.69 -62.80 -0.29 3.34 16 14 H 0.15 3.99 5.57 -51.93 -0.29 3.70 16 15 C -0.14 -2.82 6.44 -24.24 -0.16 -2.97 16 16 C -0.13 -2.43 6.43 -24.28 -0.16 -2.58 16 17 C 0.13 2.62 5.08 -62.60 -0.32 2.30 16 18 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 19 N -0.59 -14.52 2.99 -145.53 -0.44 -14.95 16 20 C -0.21 -5.70 10.59 -15.06 -0.16 -5.86 16 21 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 23 N -0.92 -26.22 10.48 55.49 0.58 -25.64 16 24 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C 0.53 7.51 7.43 -10.86 -0.08 7.43 16 29 O -0.51 -9.17 16.17 5.56 0.09 -9.08 16 30 H 0.08 0.83 7.53 -51.93 -0.39 0.44 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.10 1.13 7.06 -51.93 -0.37 0.77 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.41 8.10 7.85 -40.82 -0.32 7.78 16 38 H 0.06 1.32 7.98 -51.93 -0.41 0.91 16 39 H 0.05 1.05 7.82 -51.93 -0.41 0.64 16 40 H 0.05 1.18 8.14 -51.92 -0.42 0.76 16 41 H 0.05 0.88 7.82 -51.93 -0.41 0.47 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.86 7.83 -51.93 -0.41 0.46 16 44 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 350.61 15.07 5.28 5.28 Total: -1.00 -32.50 350.61 -8.49 -40.99 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.73 Total: 9.36 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -1.49 Total: 8.17 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.70 Total: -61.11 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 0.17 Total: -19.66 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.50 -8.49 -40.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097673180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.421 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds