Wall clock time and date at job start Fri Apr 10 2020 17:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30829 * 125.95858 * 2 1 4 4 C 1.33237 * 109.82933 * 179.97438 * 3 2 1 5 5 C 1.50703 * 125.53028 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47148 * 90.00016 * 5 4 3 7 7 O 1.21283 * 119.99803 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99675 * 180.28037 * 6 5 4 9 9 C 1.46497 * 119.99525 * 179.72583 * 8 6 5 10 10 C 1.52999 * 109.46992 * 179.97438 * 9 8 6 11 11 H 1.09004 * 110.64142 * 54.29615 * 10 9 8 12 12 C 1.54328 * 110.72179 * 291.15738 * 10 9 8 13 13 N 1.47018 * 107.27230 * 219.44328 * 12 10 9 14 14 C 1.36941 * 125.64983 * 178.90331 * 13 12 10 15 15 H 1.07997 * 119.99643 * 0.02562 * 14 13 12 16 16 C 1.38806 * 119.99970 * 180.02562 * 14 13 12 17 17 N 1.31618 * 120.00377 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99780 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47022 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47294 * 119.99844 * 18 16 14 21 21 H 1.48496 * 109.46811 * 240.00067 * 18 16 14 22 22 C 1.47427 * 108.70634 * 358.93988 * 13 12 10 23 23 C 1.55125 * 104.93757 * 24.00182 * 22 13 12 24 24 H 1.09003 * 110.93607 * 81.22313 * 23 22 13 25 25 C 1.53003 * 111.15939 * 205.12936 * 23 22 13 26 26 N 1.30717 * 108.94756 * 0.26847 * 4 3 2 27 27 N 1.34424 * 125.96100 * 179.97438 * 2 1 3 28 28 H 0.97003 * 126.82602 * 0.02562 * 27 2 1 29 29 H 1.09003 * 109.47152 * 90.02049 * 1 2 3 30 30 H 1.09002 * 109.46760 * 210.01441 * 1 2 3 31 31 H 1.08992 * 109.47189 * 330.01867 * 1 2 3 32 32 H 1.09009 * 109.46601 * 330.00037 * 5 4 3 33 33 H 1.08998 * 109.47035 * 210.00545 * 5 4 3 34 34 H 0.97000 * 119.99894 * 359.71837 * 8 6 5 35 35 H 1.08995 * 109.47421 * 299.99467 * 9 8 6 36 36 H 1.09001 * 109.47621 * 60.00103 * 9 8 6 37 37 H 1.09005 * 109.88132 * 338.86129 * 12 10 9 38 38 H 1.08997 * 109.88279 * 100.02077 * 12 10 9 39 39 H 0.97005 * 119.99799 * 180.02562 * 17 16 14 40 40 H 1.08999 * 110.36987 * 142.96345 * 22 13 12 41 41 H 1.09002 * 110.36587 * 265.18114 * 22 13 12 42 42 H 1.09001 * 109.47103 * 172.17238 * 25 23 22 43 43 H 1.08998 * 109.47468 * 292.17333 * 25 23 22 44 44 H 1.09001 * 109.46983 * 52.17908 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7372 1.6237 0.0013 6 6 5.1305 1.9351 1.4224 7 8 4.5122 1.4456 2.3438 8 7 6.1662 2.7615 1.6692 9 6 6.5447 3.0689 3.0506 10 6 7.7416 4.0220 3.0514 11 1 7.5277 4.9080 2.4534 12 6 9.0086 3.3079 2.5352 13 7 10.1355 3.7679 3.3598 14 6 11.4352 3.3542 3.2374 15 1 11.7022 2.6287 2.4833 16 6 12.4094 3.8675 4.0826 17 7 12.0839 4.7513 5.0019 18 14 14.1825 3.3037 3.9151 19 1 14.2847 2.3122 2.8143 20 1 15.0469 4.4723 3.6112 21 1 14.6251 2.6780 5.1870 22 6 9.6345 4.7476 4.3410 23 6 8.1271 4.4181 4.5011 24 1 7.9816 3.5828 5.1862 25 6 7.3393 5.6460 4.9621 26 7 3.6195 -0.6167 -0.0049 27 7 2.2964 -1.0881 0.0005 28 1 2.0094 -2.0146 0.0006 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8899 0.5141 31 1 -0.3633 0.8901 0.5135 32 1 4.4702 2.5473 -0.5126 33 1 5.5745 1.1512 -0.5123 34 1 6.6609 3.1526 0.9322 35 1 5.7048 3.5397 3.5614 36 1 6.8141 2.1477 3.5672 37 1 8.8925 2.2286 2.6350 38 1 9.1821 3.5691 1.4914 39 1 12.7649 5.1103 5.5923 40 1 10.1526 4.6303 5.2928 41 1 9.7618 5.7620 3.9630 42 1 6.2723 5.4254 4.9321 43 1 7.6288 5.9019 5.9813 44 1 7.5554 6.4855 4.3013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101957491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:46 Heat of formation + Delta-G solvation = 35.238780 kcal Electronic energy + Delta-G solvation = -24722.406635 eV Core-core repulsion = 21096.682052 eV Total energy + Delta-G solvation = -3625.724582 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.17329 -40.80919 -39.51043 -36.07333 -34.73532 -34.60497 -33.35888 -32.54723 -31.60712 -30.14170 -28.64361 -27.78397 -26.52471 -24.54250 -22.90488 -22.10493 -21.47003 -21.34264 -20.59079 -18.94381 -18.85186 -18.17154 -17.31909 -16.80372 -16.54870 -16.47453 -15.95049 -15.57053 -15.29700 -14.75694 -14.71444 -14.51974 -14.37932 -14.00621 -13.63768 -13.61672 -13.50205 -13.38176 -13.21626 -12.91501 -12.76378 -12.73707 -12.65055 -12.45053 -11.93400 -11.83252 -11.59599 -11.40306 -11.34632 -11.18177 -11.10681 -10.86764 -10.73843 -10.45898 -10.08908 -8.86251 -7.76353 -5.20528 0.56275 1.46396 1.47337 1.57528 1.61178 1.63505 1.74662 2.34532 2.49784 3.01778 3.32872 3.53998 3.63983 3.76950 3.83956 3.91961 3.98676 4.02465 4.39349 4.42062 4.43491 4.51898 4.64361 4.71472 4.76070 4.76980 4.82684 4.87947 5.00273 5.05849 5.11838 5.18647 5.24217 5.34890 5.37319 5.41597 5.45020 5.52619 5.73933 5.86230 6.20640 6.33376 6.54594 7.06074 7.12558 7.22930 7.80479 8.44007 9.25323 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.025651 B = 0.002482 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.330738 B =11280.106725 C =12079.058407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.285 3.715 3 N -0.567 5.567 4 C 0.236 3.764 5 C -0.046 4.046 6 C 0.521 3.479 7 O -0.585 6.585 8 N -0.711 5.711 9 C 0.146 3.854 10 C -0.088 4.088 11 H 0.099 0.901 12 C 0.137 3.863 13 N -0.630 5.630 14 C -0.236 4.236 15 H 0.080 0.920 16 C -0.070 4.070 17 N -0.948 5.948 18 Si 0.979 3.021 19 H -0.267 1.267 20 H -0.291 1.291 21 H -0.293 1.293 22 C 0.162 3.838 23 C -0.102 4.102 24 H 0.062 0.938 25 C -0.127 4.127 26 N -0.341 5.341 27 N -0.476 5.476 28 H 0.455 0.545 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.418 0.582 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.019 0.981 38 H 0.033 0.967 39 H 0.246 0.754 40 H 0.067 0.933 41 H -0.008 1.008 42 H 0.072 0.928 43 H 0.053 0.947 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.956 -6.497 -12.410 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.007 3.993 3 N -0.298 5.298 4 C -0.047 4.047 5 C -0.088 4.088 6 C 0.307 3.693 7 O -0.465 6.465 8 N -0.363 5.363 9 C 0.022 3.978 10 C -0.107 4.107 11 H 0.118 0.882 12 C 0.012 3.988 13 N -0.356 5.356 14 C -0.365 4.365 15 H 0.098 0.902 16 C -0.262 4.262 17 N -0.599 5.599 18 Si 0.807 3.193 19 H -0.191 1.191 20 H -0.218 1.218 21 H -0.220 1.220 22 C 0.037 3.963 23 C -0.122 4.122 24 H 0.081 0.919 25 C -0.184 4.184 26 N -0.171 5.171 27 N -0.196 5.196 28 H 0.303 0.697 29 H 0.133 0.867 30 H 0.128 0.872 31 H 0.116 0.884 32 H 0.169 0.831 33 H 0.160 0.840 34 H 0.255 0.745 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.037 0.963 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.010 0.990 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.613 -6.860 -11.704 27.233 hybrid contribution 1.368 -0.695 0.031 1.534 sum -22.246 -7.554 -11.673 26.234 Atomic orbital electron populations 1.20648 0.80000 1.06358 1.06259 1.25277 0.98355 0.82018 0.93634 1.70291 1.01575 1.31263 1.26655 1.23690 0.93511 0.90070 0.97476 1.20034 0.94092 1.00195 0.94459 1.20648 0.79493 0.77874 0.91295 1.90704 1.54513 1.53314 1.47954 1.45832 1.32845 1.48207 1.09458 1.21152 0.96079 0.97656 0.82898 1.22330 0.92573 0.98235 0.97569 0.88249 1.21525 0.87084 0.96015 0.94186 1.44828 1.03876 1.48689 1.38174 1.19483 0.83957 1.19219 1.13824 0.90213 1.25634 1.02223 0.99800 0.98561 1.70070 1.32316 1.34143 1.23326 0.84996 0.79692 0.77313 0.77259 1.19138 1.21823 1.22023 1.21792 0.90189 0.89606 0.94704 1.22473 0.95980 0.98693 0.95087 0.91938 1.21596 0.99590 0.96151 1.01106 1.77882 0.98903 1.12698 1.27616 1.47871 1.03269 1.11026 1.57455 0.69699 0.86714 0.87193 0.88416 0.83065 0.84028 0.74501 0.90869 0.93492 0.96332 0.94863 0.94404 0.91491 0.98990 0.90892 0.92813 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.51 71.24 0.75 0.29 16 2 C 0.28 5.08 8.24 138.23 1.14 6.22 16 3 N -0.57 -14.22 11.19 -179.72 -2.01 -16.23 16 4 C 0.24 6.13 6.63 138.63 0.92 7.05 16 5 C -0.05 -0.92 6.33 29.10 0.18 -0.73 16 6 C 0.52 14.05 7.82 87.66 0.69 14.74 16 7 O -0.58 -21.62 16.03 -3.04 -0.05 -21.67 16 8 N -0.71 -16.79 5.43 -463.07 -2.51 -19.30 16 9 C 0.15 4.18 5.00 86.38 0.43 4.61 16 10 C -0.09 -2.77 2.45 -9.60 -0.02 -2.79 16 11 H 0.10 2.76 8.04 -2.38 -0.02 2.74 16 12 C 0.14 5.42 6.64 86.73 0.58 5.99 16 13 N -0.63 -32.49 3.40 -691.55 -2.35 -34.84 16 14 C -0.24 -13.33 10.27 84.03 0.86 -12.47 16 15 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 16 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 17 N -0.95 -57.09 10.09 21.65 0.22 -56.88 16 18 Si 0.98 46.19 29.55 68.60 2.03 48.22 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 22 C 0.16 7.96 5.37 86.93 0.47 8.43 16 23 C -0.10 -3.73 3.10 -9.33 -0.03 -3.76 16 24 H 0.06 2.39 8.05 -2.39 -0.02 2.37 16 25 C -0.13 -3.71 9.32 71.98 0.67 -3.04 16 26 N -0.34 -9.01 12.80 -51.33 -0.66 -9.67 16 27 N -0.48 -8.64 7.45 -50.71 -0.38 -9.02 16 28 H 0.45 4.49 8.96 -213.09 -1.91 2.58 16 29 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.15 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.42 7.35 8.40 -92.71 -0.78 6.57 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.05 1.57 8.00 -2.39 -0.02 1.55 16 37 H 0.02 0.76 7.73 -2.38 -0.02 0.74 16 38 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 40 H 0.07 3.82 5.87 -2.39 -0.01 3.81 16 41 H -0.01 -0.41 7.99 -2.39 -0.02 -0.43 16 42 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.06 1.62 8.08 -2.39 -0.02 1.60 16 Total: -1.00 -84.30 364.95 -0.28 -84.57 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -1.67 Total: 13.80 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 7.10 Total: 21.00 kcal Atomic # 7 Polarization: -138.24 SS G_CDS: -7.69 Total: -145.93 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.05 Total: -21.67 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -84.30 -0.28 -84.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101957491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.812 kcal (2) G-P(sol) polarization free energy of solvation -84.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds