Wall clock time and date at job start Fri Apr 10 2020 17:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47249 * 2 1 4 4 C 1.52996 * 109.47249 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.47121 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00334 * 359.97438 * 5 4 3 7 7 N 1.34784 * 120.00127 * 179.97438 * 5 4 3 8 8 C 1.47576 * 134.49542 * 180.02562 * 7 5 4 9 9 C 1.53942 * 86.11852 * 155.35966 * 8 7 5 10 10 N 1.46491 * 113.74194 * 137.95195 * 9 8 7 11 11 C 1.35317 * 125.87029 * 277.21898 * 10 9 8 12 12 C 1.35352 * 106.17693 * 180.18381 * 11 10 9 13 13 C 1.50700 * 126.75361 * 179.84844 * 12 11 10 14 14 N 1.46498 * 109.46769 * 94.71485 * 13 12 11 15 15 C 1.36943 * 119.99752 * 179.72432 * 14 13 12 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 13 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 13 18 18 N 1.31624 * 119.99698 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47159 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47290 * 120.00044 * 19 17 15 22 22 H 1.48503 * 109.47163 * 240.00049 * 19 17 15 23 23 N 1.33772 * 106.49634 * 359.59642 * 12 11 10 24 24 N 1.28636 * 108.88627 * 0.25926 * 23 12 11 25 25 C 1.47807 * 134.45239 * 359.87039 * 7 5 4 26 26 H 1.09003 * 109.47364 * 300.00842 * 1 2 3 27 27 H 1.09003 * 109.47218 * 59.99994 * 1 2 3 28 28 H 1.09001 * 109.47177 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47120 * 239.99486 * 2 1 3 30 30 H 1.09006 * 109.46629 * 119.99559 * 2 1 3 31 31 H 1.08992 * 109.47141 * 59.99345 * 3 2 1 32 32 H 1.09009 * 109.46463 * 299.99462 * 3 2 1 33 33 H 1.08996 * 109.47120 * 59.99486 * 4 3 2 34 34 H 1.08998 * 109.46940 * 299.99615 * 4 3 2 35 35 H 1.09000 * 113.76645 * 41.05224 * 8 7 5 36 36 H 1.09000 * 113.87057 * 269.67450 * 8 7 5 37 37 H 1.09000 * 113.74068 * 269.15192 * 9 8 7 38 38 H 1.08002 * 126.91295 * 0.03783 * 11 10 9 39 39 H 1.09004 * 109.47210 * 334.71843 * 13 12 11 40 40 H 1.08994 * 109.47121 * 214.71813 * 13 12 11 41 41 H 0.97001 * 120.00384 * 0.02562 * 14 13 12 42 42 H 0.96999 * 119.99739 * 180.02562 * 18 17 15 43 43 H 1.09002 * 113.77031 * 90.37650 * 25 7 5 44 44 H 1.08999 * 113.84046 * 318.91260 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2842 3.7851 -0.0013 7 7 5.3974 3.1096 0.0009 8 6 6.2219 4.3335 0.0012 9 6 7.3210 3.4674 0.6426 10 7 8.6592 3.7158 0.1007 11 6 9.1679 3.1790 -1.0325 12 6 10.4231 3.6711 -1.1524 13 6 11.4083 3.3704 -2.2524 14 7 11.3171 4.4049 -3.2857 15 6 12.1270 4.3444 -4.3883 16 1 12.8296 3.5317 -4.4983 17 6 12.0447 5.3277 -5.3647 18 7 11.1886 6.3185 -5.2303 19 14 13.1488 5.2448 -6.8691 20 1 14.0145 4.0415 -6.7820 21 1 12.3121 5.1645 -8.0934 22 1 13.9970 6.4623 -6.9283 23 7 10.6151 4.4813 -0.1053 24 7 9.5514 4.4860 0.6180 25 6 6.6079 2.2614 0.0050 26 1 -0.3634 0.5140 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9562 -0.8901 33 1 3.9337 0.9285 -0.8890 34 1 3.9329 0.9289 0.8909 35 1 5.8429 5.1184 0.6558 36 1 6.4738 4.6959 -0.9955 37 1 7.2977 3.4648 1.7324 38 1 8.6729 2.4937 -1.7047 39 1 11.1791 2.3987 -2.6899 40 1 12.4178 3.3549 -1.8417 41 1 10.6863 5.1350 -3.1867 42 1 11.1308 7.0054 -5.9127 43 1 6.9728 2.0117 -0.9914 44 1 6.5367 1.3952 0.6627 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105162675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:02 Heat of formation + Delta-G solvation = 105.838547 kcal Electronic energy + Delta-G solvation = -24202.776352 eV Core-core repulsion = 20580.113206 eV Total energy + Delta-G solvation = -3622.663147 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.15046 -40.74449 -38.54819 -35.73711 -35.02193 -33.54448 -31.88814 -31.28479 -29.97851 -29.22380 -27.06144 -25.95204 -25.08272 -23.58818 -22.84722 -21.53055 -21.07760 -20.68068 -19.39375 -18.00426 -17.49718 -17.06844 -16.51399 -16.30359 -15.87017 -15.21698 -14.87227 -14.56084 -14.37028 -14.03906 -13.86317 -13.69617 -13.41365 -13.27684 -13.15027 -12.79424 -12.72549 -12.61987 -12.10166 -11.81062 -11.76314 -11.66215 -11.42425 -11.31367 -11.01664 -10.91282 -10.83855 -10.56755 -10.23612 -10.07446 -9.93818 -9.75519 -9.32047 -8.93533 -8.88876 -6.93432 -5.75310 -3.05228 1.67668 1.89025 2.13148 2.60912 2.84169 3.44788 3.45106 3.50284 3.52793 3.69245 4.15748 4.24597 4.36997 4.49046 4.60008 4.63331 4.67177 4.71731 4.81447 4.83723 4.99934 5.04565 5.08614 5.17682 5.25871 5.32784 5.38073 5.42020 5.43687 5.51763 5.59964 5.73220 5.75108 5.81562 5.94098 6.14800 6.34183 6.60645 6.65226 6.74208 7.07005 7.67219 7.70456 8.41779 8.75909 9.53711 10.08971 10.44587 11.47401 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.016867 B = 0.002398 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.616578 B =11672.097372 C =12560.356791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.107 4.107 4 C -0.134 4.134 5 C 0.542 3.458 6 O -0.530 6.530 7 N -0.647 5.647 8 C 0.103 3.897 9 C 0.113 3.887 10 N -0.295 5.295 11 C -0.046 4.046 12 C 0.000 4.000 13 C 0.232 3.768 14 N -0.726 5.726 15 C -0.240 4.240 16 H 0.074 0.926 17 C -0.014 4.014 18 N -0.931 5.931 19 Si 0.909 3.091 20 H -0.279 1.279 21 H -0.292 1.292 22 H -0.291 1.291 23 N -0.250 5.250 24 N -0.090 5.090 25 C 0.100 3.900 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.145 0.855 38 H 0.189 0.811 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.104 0.896 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.359 -15.655 14.026 27.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.145 4.145 4 C -0.174 4.174 5 C 0.332 3.668 6 O -0.405 6.405 7 N -0.384 5.384 8 C -0.021 4.021 9 C 0.009 3.991 10 N -0.090 5.090 11 C -0.196 4.196 12 C -0.138 4.138 13 C 0.103 3.897 14 N -0.371 5.371 15 C -0.371 4.371 16 H 0.092 0.908 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.740 3.260 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.218 1.218 23 N -0.118 5.118 24 N -0.069 5.069 25 C -0.024 4.024 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.163 0.837 38 H 0.206 0.794 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.122 0.878 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.574 -14.303 15.083 27.876 hybrid contribution 0.066 -0.400 -1.732 1.778 sum -18.508 -14.703 13.351 27.147 Atomic orbital electron populations 1.21762 0.95579 1.01640 1.02094 1.21543 0.96282 0.96334 1.02082 1.21413 0.92322 0.96931 1.03808 1.21681 0.98240 0.92880 1.04627 1.20501 0.79244 0.92084 0.74945 1.90749 1.53589 1.46912 1.49289 1.49785 1.04024 1.09750 1.74881 1.23605 0.85778 0.90191 1.02501 1.23676 0.76654 0.97598 1.01183 1.47118 1.12776 1.31415 1.17665 1.23314 0.96734 1.06659 0.92907 1.22500 0.95439 0.97994 0.97844 1.18966 0.93219 0.93029 0.84524 1.42317 1.46774 1.27722 1.20274 1.19271 1.14040 1.07189 0.96596 0.90796 1.24773 0.99688 0.97337 0.99172 1.69692 1.38698 1.14047 1.35516 0.86084 0.79798 0.77275 0.82807 1.20453 1.21924 1.21844 1.75131 1.15484 1.16986 1.04157 1.78309 0.94230 1.12515 1.21822 1.23685 0.81405 0.94806 1.02535 0.92651 0.92582 0.92689 0.91852 0.91941 0.91111 0.91047 0.88623 0.88736 0.88116 0.88228 0.83718 0.79448 0.94413 0.94239 0.78108 0.93538 0.87789 0.87757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.12 -0.63 5.93 -26.73 -0.16 -0.79 16 3 C -0.11 -0.72 4.50 -26.73 -0.12 -0.84 16 4 C -0.13 -0.80 5.45 -27.89 -0.15 -0.95 16 5 C 0.54 5.23 8.06 -10.98 -0.09 5.15 16 6 O -0.53 -7.41 16.71 5.56 0.09 -7.32 16 7 N -0.65 -5.29 3.61 -178.36 -0.64 -5.94 16 8 C 0.10 0.94 8.64 -2.97 -0.03 0.92 16 9 C 0.11 0.90 5.13 -70.16 -0.36 0.54 16 10 N -0.30 -3.71 3.54 -56.32 -0.20 -3.91 16 11 C -0.05 -0.63 10.72 -17.04 -0.18 -0.81 16 12 C 0.00 0.00 6.61 -82.78 -0.55 -0.55 16 13 C 0.23 4.69 6.82 -5.19 -0.04 4.66 16 14 N -0.73 -18.63 5.59 -61.09 -0.34 -18.97 16 15 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 16 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 19 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 N -0.25 -4.89 12.41 33.29 0.41 -4.48 16 24 N -0.09 -1.51 13.17 60.35 0.79 -0.71 16 25 C 0.10 0.54 8.00 -2.85 -0.02 0.52 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.07 0.58 8.10 -51.92 -0.42 0.16 16 33 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.15 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.19 1.86 6.74 -52.49 -0.35 1.50 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.39 10.71 7.66 -40.82 -0.31 10.39 16 42 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.10 0.52 6.31 -51.93 -0.33 0.19 16 44 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 373.13 15.07 5.62 5.62 Total: -1.00 -36.41 373.13 -7.01 -43.42 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.88 Total: 2.68 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -1.57 Total: 0.08 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 0.75 Total: -61.84 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.09 Total: -7.32 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.41 -7.01 -43.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105162675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.256 kcal (2) G-P(sol) polarization free energy of solvation -36.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds