Wall clock time and date at job start Fri Apr 10 2020 17:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47112 * 2 1 4 4 H 1.09002 * 109.47013 * 55.00149 * 3 2 1 5 5 C 1.53002 * 109.47080 * 295.00085 * 3 2 1 6 6 C 1.50702 * 109.46874 * 175.00061 * 3 2 1 7 7 O 1.21278 * 119.99965 * 35.44593 * 6 3 2 8 8 N 1.34780 * 119.99859 * 215.44221 * 6 3 2 9 9 C 1.47575 * 134.49001 * 357.01201 * 8 6 3 10 10 C 1.53948 * 86.11504 * 155.36008 * 9 8 6 11 11 N 1.46497 * 113.74549 * 137.95265 * 10 9 8 12 12 C 1.35314 * 125.86632 * 275.32636 * 11 10 9 13 13 C 1.35358 * 106.17544 * 180.11497 * 12 11 10 14 14 C 1.50692 * 126.75402 * 179.85213 * 13 12 11 15 15 N 1.46499 * 109.47435 * 94.70812 * 14 13 12 16 16 C 1.36937 * 120.00099 * 179.72314 * 15 14 13 17 17 H 1.07998 * 120.00015 * 0.28188 * 16 15 14 18 18 C 1.38816 * 119.99776 * 180.27803 * 16 15 14 19 19 N 1.31620 * 120.00143 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99950 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.47289 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47057 * 120.00028 * 20 18 16 23 23 H 1.48503 * 109.47369 * 240.00098 * 20 18 16 24 24 N 1.33774 * 106.49387 * 359.59278 * 13 12 11 25 25 N 1.28632 * 108.88798 * 0.26006 * 24 13 12 26 26 C 1.47578 * 134.49264 * 177.00936 * 8 6 3 27 27 H 1.09002 * 109.46916 * 299.99791 * 1 2 3 28 28 H 1.08996 * 109.47048 * 59.99859 * 1 2 3 29 29 H 1.08995 * 109.47188 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46983 * 239.99736 * 2 1 3 31 31 H 1.09005 * 109.46848 * 120.00121 * 2 1 3 32 32 H 1.09002 * 109.46597 * 185.55089 * 5 3 2 33 33 H 1.09001 * 109.46595 * 305.54740 * 5 3 2 34 34 H 1.08996 * 109.47294 * 65.55276 * 5 3 2 35 35 H 1.08999 * 113.77445 * 41.06192 * 9 8 6 36 36 H 1.09000 * 113.87512 * 269.66870 * 9 8 6 37 37 H 1.09000 * 113.74180 * 269.14934 * 10 9 8 38 38 H 1.07998 * 126.91669 * 359.96566 * 12 11 10 39 39 H 1.09007 * 109.47075 * 334.71335 * 14 13 12 40 40 H 1.09004 * 109.47483 * 214.71529 * 14 13 12 41 41 H 0.96997 * 119.99779 * 0.02562 * 15 14 13 42 42 H 0.96999 * 119.99917 * 180.02562 * 19 18 16 43 43 H 1.09001 * 113.76960 * 90.33924 * 26 8 6 44 44 H 1.09000 * 113.77088 * 318.94337 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5420 1.4442 0.1238 7 8 4.1953 0.5719 -0.4083 8 7 4.1591 2.4152 0.8259 9 6 3.7044 3.6266 1.5355 10 6 4.9824 3.4834 2.3819 11 7 5.6672 4.7533 2.6357 12 6 6.5542 5.3547 1.8095 13 6 6.9372 6.4939 2.4322 14 6 7.9196 7.5152 1.9198 15 7 7.1954 8.5885 1.2344 16 6 7.8838 9.6383 0.6875 17 1 8.9609 9.6727 0.7573 18 6 7.1971 10.6582 0.0431 19 7 5.8843 10.6165 -0.0417 20 14 8.1361 12.0899 -0.7036 21 1 9.5912 11.9008 -0.4748 22 1 7.8687 12.1498 -2.1632 23 1 7.6951 13.3571 -0.0672 24 7 6.2677 6.5376 3.5896 25 7 5.5239 5.4920 3.6801 26 6 5.5609 2.6939 1.1937 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.0814 3.1201 -1.3507 33 1 1.9865 1.5333 -2.1516 34 1 0.5496 2.2135 -1.3509 35 1 2.7841 3.4847 2.1020 36 1 3.6874 4.5218 0.9138 37 1 4.8469 2.8862 3.2836 38 1 6.8909 4.9966 0.8478 39 1 8.6084 7.0387 1.2221 40 1 8.4803 7.9318 2.7565 41 1 6.2279 8.5578 1.1719 42 1 5.4045 11.3290 -0.4922 43 1 6.0900 3.3140 0.4701 44 1 6.1227 1.8072 1.4872 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105163052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:06 Heat of formation + Delta-G solvation = 109.889393 kcal Electronic energy + Delta-G solvation = -24684.467606 eV Core-core repulsion = 21061.980117 eV Total energy + Delta-G solvation = -3622.487489 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.15012 -40.86254 -38.68808 -35.77866 -35.02229 -33.53538 -31.88151 -30.58935 -29.98112 -29.10674 -27.09720 -25.88184 -25.65641 -24.02928 -22.85441 -21.82498 -20.87343 -20.57295 -19.28592 -18.01282 -17.66451 -17.05231 -16.67989 -15.89722 -15.47793 -15.27244 -14.81771 -14.57691 -14.36767 -13.99508 -13.93535 -13.64045 -13.33420 -13.19434 -13.08964 -12.73081 -12.66996 -12.54876 -12.19184 -12.15570 -11.97606 -11.79293 -11.31667 -11.24432 -11.13548 -10.91059 -10.83943 -10.54073 -10.15794 -10.06300 -9.91868 -9.75492 -9.32563 -8.93051 -8.88863 -6.93560 -5.75836 -3.05379 1.68532 1.88312 2.12607 2.61104 2.84209 3.41842 3.44661 3.50390 3.52622 3.75228 4.09863 4.26011 4.29757 4.48795 4.60197 4.64426 4.73775 4.76692 4.89710 4.94965 4.95905 5.02487 5.07343 5.18903 5.22041 5.28056 5.40302 5.44026 5.46342 5.58964 5.59932 5.60619 5.75027 5.82101 5.90158 6.14819 6.34673 6.61826 6.65872 6.74594 7.06382 7.67007 7.70583 8.41443 8.75815 9.53505 10.08621 10.44490 11.46986 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.002673 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.413143 B =10471.340769 C =11361.193606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.103 4.103 4 H 0.090 0.910 5 C -0.143 4.143 6 C 0.549 3.451 7 O -0.531 6.531 8 N -0.644 5.644 9 C 0.098 3.902 10 C 0.113 3.887 11 N -0.295 5.295 12 C -0.045 4.045 13 C 0.000 4.000 14 C 0.231 3.769 15 N -0.726 5.726 16 C -0.239 4.239 17 H 0.074 0.926 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.909 3.091 21 H -0.279 1.279 22 H -0.292 1.292 23 H -0.291 1.291 24 N -0.250 5.250 25 N -0.091 5.091 26 C 0.104 3.896 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.145 0.855 38 H 0.188 0.812 39 H 0.039 0.961 40 H 0.040 0.960 41 H 0.385 0.615 42 H 0.254 0.746 43 H 0.102 0.898 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.272 -22.900 1.402 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.125 4.125 4 H 0.108 0.892 5 C -0.200 4.200 6 C 0.339 3.661 7 O -0.407 6.407 8 N -0.382 5.382 9 C -0.026 4.026 10 C 0.009 3.991 11 N -0.090 5.090 12 C -0.195 4.195 13 C -0.138 4.138 14 C 0.102 3.898 15 N -0.371 5.371 16 C -0.370 4.370 17 H 0.092 0.908 18 C -0.210 4.210 19 N -0.580 5.580 20 Si 0.740 3.260 21 H -0.204 1.204 22 H -0.219 1.219 23 H -0.218 1.218 24 N -0.118 5.118 25 N -0.069 5.069 26 C -0.020 4.020 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.163 0.837 38 H 0.205 0.795 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.219 0.781 42 H 0.064 0.936 43 H 0.120 0.880 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.598 -23.299 2.301 25.303 hybrid contribution 0.555 0.731 -1.483 1.744 sum -9.043 -22.568 0.818 24.326 Atomic orbital electron populations 1.21824 0.94988 1.02092 1.02147 1.21416 0.96009 0.93796 1.03374 1.21306 0.90520 0.99558 1.01077 0.89152 1.21775 1.02370 1.00507 0.95381 1.20479 0.90205 0.79613 0.75822 1.90726 1.67413 1.37032 1.45494 1.49757 1.09198 1.24588 1.54610 1.23708 0.97990 0.88550 0.92374 1.23681 0.93342 0.81859 1.00207 1.47110 1.30111 1.17440 1.14336 1.23341 0.98743 0.97261 1.00136 1.22487 1.02066 0.96809 0.92407 1.18970 0.89974 0.86091 0.94731 1.42308 1.06455 1.22206 1.66095 1.19277 0.91362 0.98393 1.27955 0.90801 1.24760 0.95575 0.98995 1.01628 1.69688 1.05586 1.34371 1.48398 0.86088 0.78821 0.82544 0.78547 1.20449 1.21922 1.21841 1.75123 1.05975 1.12251 1.18408 1.78293 1.20367 1.00098 1.08192 1.23549 0.85880 0.99477 0.93045 0.92577 0.92193 0.92297 0.90647 0.91709 0.92092 0.91604 0.90833 0.87949 0.87938 0.83727 0.79455 0.94388 0.94219 0.78134 0.93571 0.88040 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.67 37.16 0.36 -0.43 16 2 C -0.11 -0.75 4.99 -26.73 -0.13 -0.88 16 3 C -0.10 -0.75 2.59 -91.77 -0.24 -0.98 16 4 H 0.09 0.51 7.47 -51.93 -0.39 0.12 16 5 C -0.14 -0.98 8.79 37.16 0.33 -0.65 16 6 C 0.55 5.52 7.05 -10.98 -0.08 5.44 16 7 O -0.53 -7.32 17.11 5.56 0.10 -7.22 16 8 N -0.64 -5.46 3.61 -178.57 -0.64 -6.10 16 9 C 0.10 0.71 8.19 -2.98 -0.02 0.69 16 10 C 0.11 0.91 5.15 -70.16 -0.36 0.55 16 11 N -0.30 -3.72 3.54 -56.31 -0.20 -3.92 16 12 C -0.04 -0.63 10.72 -17.04 -0.18 -0.81 16 13 C 0.00 0.00 6.62 -82.78 -0.55 -0.55 16 14 C 0.23 4.73 6.82 -5.20 -0.04 4.70 16 15 N -0.73 -18.62 5.59 -61.09 -0.34 -18.96 16 16 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 17 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 20 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 N -0.25 -4.87 12.41 33.29 0.41 -4.45 16 25 N -0.09 -1.49 13.17 60.35 0.79 -0.70 16 26 C 0.10 0.80 8.19 -2.98 -0.02 0.78 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.29 6.69 -51.93 -0.35 -0.06 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.61 8.02 -51.93 -0.42 0.20 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.39 6.84 -51.93 -0.36 0.04 16 35 H 0.10 0.53 7.82 -51.93 -0.41 0.13 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.15 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.19 2.03 6.72 -52.49 -0.35 1.67 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.39 10.63 7.66 -40.82 -0.31 10.31 16 42 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.10 0.77 6.31 -51.93 -0.33 0.45 16 44 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -35.60 368.71 -6.49 -42.09 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.68 Total: 3.47 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -1.18 Total: 0.55 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: 0.75 Total: -61.77 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: 0.10 Total: -7.22 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.60 -6.49 -42.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105163052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.983 kcal (2) G-P(sol) polarization free energy of solvation -35.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds