Wall clock time and date at job start Fri Apr 10 2020 17:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47112 * 2 1 4 4 H 1.09002 * 109.47013 * 55.00149 * 3 2 1 5 5 C 1.53002 * 109.47080 * 295.00085 * 3 2 1 6 6 C 1.50702 * 109.46874 * 175.00061 * 3 2 1 7 7 O 1.21278 * 119.99965 * 35.44593 * 6 3 2 8 8 N 1.34780 * 119.99859 * 215.44221 * 6 3 2 9 9 C 1.47575 * 134.49001 * 357.01201 * 8 6 3 10 10 C 1.53948 * 86.11504 * 155.36008 * 9 8 6 11 11 N 1.46497 * 113.74549 * 137.95265 * 10 9 8 12 12 C 1.35314 * 125.86632 * 275.32636 * 11 10 9 13 13 C 1.35358 * 106.17544 * 180.11497 * 12 11 10 14 14 C 1.50692 * 126.75402 * 179.85213 * 13 12 11 15 15 N 1.46499 * 109.47435 * 94.70812 * 14 13 12 16 16 C 1.36937 * 120.00099 * 179.72314 * 15 14 13 17 17 H 1.07998 * 120.00015 * 0.28188 * 16 15 14 18 18 C 1.38816 * 119.99776 * 180.27803 * 16 15 14 19 19 N 1.31620 * 120.00143 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99950 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.47289 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47057 * 120.00028 * 20 18 16 23 23 H 1.48503 * 109.47369 * 240.00098 * 20 18 16 24 24 N 1.33774 * 106.49387 * 359.59278 * 13 12 11 25 25 N 1.28632 * 108.88798 * 0.26006 * 24 13 12 26 26 C 1.47578 * 134.49264 * 177.00936 * 8 6 3 27 27 H 1.09002 * 109.46916 * 299.99791 * 1 2 3 28 28 H 1.08996 * 109.47048 * 59.99859 * 1 2 3 29 29 H 1.08995 * 109.47188 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46983 * 239.99736 * 2 1 3 31 31 H 1.09005 * 109.46848 * 120.00121 * 2 1 3 32 32 H 1.09002 * 109.46597 * 185.55089 * 5 3 2 33 33 H 1.09001 * 109.46595 * 305.54740 * 5 3 2 34 34 H 1.08996 * 109.47294 * 65.55276 * 5 3 2 35 35 H 1.08999 * 113.77445 * 41.06192 * 9 8 6 36 36 H 1.09000 * 113.87512 * 269.66870 * 9 8 6 37 37 H 1.09000 * 113.74180 * 269.14934 * 10 9 8 38 38 H 1.07998 * 126.91669 * 359.96566 * 12 11 10 39 39 H 1.09007 * 109.47075 * 334.71335 * 14 13 12 40 40 H 1.09004 * 109.47483 * 214.71529 * 14 13 12 41 41 H 0.96997 * 119.99779 * 0.02562 * 15 14 13 42 42 H 0.96999 * 119.99917 * 180.02562 * 19 18 16 43 43 H 1.09001 * 113.76960 * 90.33924 * 26 8 6 44 44 H 1.09000 * 113.77088 * 318.94337 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5420 1.4442 0.1238 7 8 4.1953 0.5719 -0.4083 8 7 4.1591 2.4152 0.8259 9 6 3.7044 3.6266 1.5355 10 6 4.9824 3.4834 2.3819 11 7 5.6672 4.7533 2.6357 12 6 6.5542 5.3547 1.8095 13 6 6.9372 6.4939 2.4322 14 6 7.9196 7.5152 1.9198 15 7 7.1954 8.5885 1.2344 16 6 7.8838 9.6383 0.6875 17 1 8.9609 9.6727 0.7573 18 6 7.1971 10.6582 0.0431 19 7 5.8843 10.6165 -0.0417 20 14 8.1361 12.0899 -0.7036 21 1 9.5912 11.9008 -0.4748 22 1 7.8687 12.1498 -2.1632 23 1 7.6951 13.3571 -0.0672 24 7 6.2677 6.5376 3.5896 25 7 5.5239 5.4920 3.6801 26 6 5.5609 2.6939 1.1937 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.0814 3.1201 -1.3507 33 1 1.9865 1.5333 -2.1516 34 1 0.5496 2.2135 -1.3509 35 1 2.7841 3.4847 2.1020 36 1 3.6874 4.5218 0.9138 37 1 4.8469 2.8862 3.2836 38 1 6.8909 4.9966 0.8478 39 1 8.6084 7.0387 1.2221 40 1 8.4803 7.9318 2.7565 41 1 6.2279 8.5578 1.1719 42 1 5.4045 11.3290 -0.4922 43 1 6.0900 3.3140 0.4701 44 1 6.1227 1.8072 1.4872 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105163052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:06 Heat of formation + Delta-G solvation = 84.564537 kcal Electronic energy + Delta-G solvation = -24685.565774 eV Core-core repulsion = 21061.980117 eV Total energy + Delta-G solvation = -3623.585657 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.32894 -41.61127 -39.45755 -36.80174 -36.40284 -34.79096 -33.58355 -31.63783 -31.22525 -29.82845 -27.94262 -27.38890 -26.28074 -24.97970 -24.70421 -22.67303 -22.10645 -21.40853 -19.96386 -19.40143 -18.71773 -18.28018 -17.58856 -16.89846 -16.55793 -16.27596 -16.01044 -15.80111 -15.43441 -15.10950 -15.07721 -14.66423 -14.40580 -14.32379 -13.91918 -13.88498 -13.50776 -13.40500 -13.08180 -12.97919 -12.80088 -12.73020 -12.65594 -12.59051 -12.47194 -12.02918 -11.86965 -11.82560 -11.74036 -11.64730 -11.11253 -10.96303 -10.82286 -10.22990 -10.03658 -9.00239 -7.92454 -5.22227 0.55198 1.04368 1.37854 1.45819 1.51637 1.52919 1.62523 1.82774 2.60334 2.69956 3.09555 3.34364 3.41694 3.55178 3.65949 3.76058 3.92375 3.97046 4.08530 4.21383 4.23986 4.28070 4.32161 4.41036 4.45015 4.48781 4.54696 4.57772 4.65422 4.67554 4.87615 4.89746 4.97138 5.08520 5.13333 5.15622 5.18442 5.30949 5.45511 5.53205 5.62532 6.27852 6.35670 6.92406 7.34916 7.50274 8.06168 8.31760 9.31571 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.002673 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.413143 B =10471.340769 C =11361.193606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.100 4.100 4 H 0.114 0.886 5 C -0.141 4.141 6 C 0.545 3.455 7 O -0.576 6.576 8 N -0.643 5.643 9 C 0.103 3.897 10 C 0.110 3.890 11 N -0.276 5.276 12 C -0.020 4.020 13 C -0.032 4.032 14 C 0.234 3.766 15 N -0.738 5.738 16 C -0.241 4.241 17 H 0.084 0.916 18 C -0.078 4.078 19 N -0.971 5.971 20 Si 0.976 3.024 21 H -0.262 1.262 22 H -0.292 1.292 23 H -0.297 1.297 24 N -0.295 5.295 25 N -0.100 5.100 26 C 0.101 3.899 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.131 0.869 36 H 0.094 0.906 37 H 0.169 0.831 38 H 0.222 0.778 39 H 0.062 0.938 40 H 0.030 0.970 41 H 0.371 0.629 42 H 0.250 0.750 43 H 0.105 0.895 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 -23.900 1.323 25.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 C -0.121 4.121 4 H 0.132 0.868 5 C -0.198 4.198 6 C 0.336 3.664 7 O -0.454 6.454 8 N -0.378 5.378 9 C -0.021 4.021 10 C 0.008 3.992 11 N -0.071 5.071 12 C -0.171 4.171 13 C -0.170 4.170 14 C 0.106 3.894 15 N -0.381 5.381 16 C -0.372 4.372 17 H 0.102 0.898 18 C -0.270 4.270 19 N -0.622 5.622 20 Si 0.805 3.195 21 H -0.186 1.186 22 H -0.220 1.220 23 H -0.224 1.224 24 N -0.162 5.162 25 N -0.079 5.079 26 C -0.022 4.022 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.149 0.851 36 H 0.112 0.888 37 H 0.186 0.814 38 H 0.238 0.762 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.203 0.797 42 H 0.059 0.941 43 H 0.123 0.877 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.840 -24.324 2.266 26.336 hybrid contribution 0.640 0.901 -1.427 1.805 sum -9.201 -23.422 0.839 25.179 Atomic orbital electron populations 1.21803 0.93411 1.02590 1.02847 1.21387 0.97284 0.93449 1.02306 1.21376 0.88610 1.00035 1.02068 0.86842 1.21775 1.03531 0.99819 0.94719 1.21004 0.91238 0.79064 0.75074 1.90705 1.68504 1.38804 1.47424 1.49769 1.09685 1.24459 1.53932 1.23782 0.98717 0.87673 0.91914 1.24118 0.93468 0.80046 1.01537 1.47391 1.28956 1.17862 1.12880 1.23661 0.97328 0.95604 1.00537 1.22244 1.03340 0.98147 0.93313 1.18985 0.90497 0.85579 0.94349 1.42507 1.05987 1.23178 1.66457 1.19723 0.92006 0.98758 1.26754 0.89806 1.25609 0.96455 1.01899 1.02989 1.69848 1.07202 1.35222 1.49951 0.85028 0.78382 0.78805 0.77252 1.18649 1.21951 1.22431 1.75057 1.07395 1.14012 1.19738 1.78182 1.20241 1.00027 1.09423 1.23670 0.85886 0.99895 0.92770 0.91552 0.91740 0.91998 0.92471 0.92122 0.92555 0.92934 0.88933 0.85128 0.88759 0.81361 0.76193 0.91989 0.95240 0.79736 0.94096 0.87710 0.86896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.67 71.98 0.70 -0.55 16 2 C -0.11 -1.35 4.99 30.59 0.15 -1.20 16 3 C -0.10 -1.26 2.59 -11.54 -0.03 -1.29 16 4 H 0.11 0.90 7.47 -2.39 -0.02 0.88 16 5 C -0.14 -1.73 8.79 71.98 0.63 -1.09 16 6 C 0.54 10.21 7.05 87.66 0.62 10.83 16 7 O -0.58 -15.69 17.11 -3.02 -0.05 -15.74 16 8 N -0.64 -9.42 3.61 -837.25 -3.02 -12.44 16 9 C 0.10 1.20 8.19 86.48 0.71 1.90 16 10 C 0.11 1.46 5.15 46.75 0.24 1.70 16 11 N -0.28 -6.38 3.54 -332.06 -1.18 -7.56 16 12 C -0.02 -0.52 10.72 83.49 0.89 0.37 16 13 C -0.03 -1.15 6.62 41.60 0.28 -0.88 16 14 C 0.23 9.47 6.82 85.63 0.58 10.05 16 15 N -0.74 -38.03 5.59 -347.18 -1.94 -39.97 16 16 C -0.24 -13.37 9.99 84.03 0.84 -12.53 16 17 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 18 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 19 N -0.97 -59.94 13.06 21.65 0.28 -59.66 16 20 Si 0.98 46.01 29.55 68.60 2.03 48.03 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 23 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 24 N -0.29 -11.46 12.41 -48.60 -0.60 -12.07 16 25 N -0.10 -3.18 13.17 37.02 0.49 -2.69 16 26 C 0.10 1.30 8.19 86.48 0.71 2.01 16 27 H 0.07 0.43 8.14 -2.39 -0.02 0.42 16 28 H 0.06 0.48 6.69 -2.39 -0.02 0.47 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.93 8.02 -2.39 -0.02 0.91 16 31 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 0.78 6.84 -2.39 -0.02 0.76 16 35 H 0.13 0.84 7.82 -2.39 -0.02 0.83 16 36 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.17 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.22 4.07 6.72 -2.91 -0.02 4.05 16 39 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.37 20.85 7.66 -92.71 -0.71 20.14 16 42 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 43 H 0.10 1.31 6.31 -2.39 -0.02 1.30 16 44 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -78.48 368.71 3.09 -75.39 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.30 Total: 21.36 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 6.79 Total: 5.34 kcal Atomic # 7 Polarization: -128.42 SS G_CDS: -5.97 Total: -134.39 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.05 Total: -15.74 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -78.48 3.09 -75.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105163052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.956 kcal (2) G-P(sol) polarization free energy of solvation -78.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds