Wall clock time and date at job start Fri Apr 10 2020 18:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34773 * 120.00408 * 2 1 4 4 O 1.21283 * 120.00056 * 4.77709 * 3 2 1 5 5 C 1.50703 * 120.00426 * 184.78295 * 3 2 1 6 6 C 1.50701 * 115.54544 * 293.58064 * 5 3 2 7 7 O 1.21286 * 119.99823 * 120.71107 * 6 5 3 8 8 N 1.34776 * 120.00130 * 300.70004 * 6 5 3 9 9 C 1.46496 * 120.00120 * 174.84439 * 8 6 5 10 10 H 1.09002 * 110.55671 * 34.57776 * 9 8 6 11 11 C 1.54855 * 110.62974 * 271.68204 * 9 8 6 12 12 C 1.56225 * 103.26939 * 241.54567 * 11 9 8 13 13 H 1.08994 * 115.55755 * 159.50046 * 12 11 9 14 14 C 1.55846 * 104.99814 * 288.06170 * 12 11 9 15 15 C 1.54854 * 103.44869 * 71.88190 * 14 12 11 16 16 C 1.55845 * 110.62658 * 157.47651 * 9 8 6 17 17 H 1.08999 * 115.56468 * 318.92864 * 16 9 8 18 18 N 1.50244 * 101.04809 * 85.55503 * 16 9 8 19 19 C 1.36934 * 130.83737 * 233.94808 * 18 16 9 20 20 H 1.07997 * 120.00441 * 341.59562 * 19 18 16 21 21 C 1.38811 * 119.99815 * 161.59761 * 19 18 16 22 22 N 1.31621 * 120.00008 * 154.24395 * 21 19 18 23 23 Si 1.86798 * 120.00229 * 334.23958 * 21 19 18 24 24 H 1.48504 * 109.47368 * 87.69629 * 23 21 19 25 25 H 1.48502 * 109.47404 * 207.69888 * 23 21 19 26 26 H 1.48504 * 109.47153 * 327.69507 * 23 21 19 27 27 C 1.52998 * 117.49881 * 79.24398 * 5 3 2 28 28 C 1.52992 * 117.50172 * 147.90899 * 5 3 2 29 29 H 1.09005 * 109.47110 * 300.00013 * 1 2 3 30 30 H 1.08999 * 109.47362 * 59.99682 * 1 2 3 31 31 H 1.09001 * 109.47673 * 180.02562 * 1 2 3 32 32 H 0.97007 * 119.99996 * 180.02562 * 2 1 3 33 33 H 0.97002 * 119.99994 * 355.12797 * 8 6 5 34 34 H 1.08997 * 110.62297 * 359.97438 * 11 9 8 35 35 H 1.08992 * 110.62714 * 123.01739 * 11 9 8 36 36 H 1.08997 * 110.62834 * 313.38730 * 14 12 11 37 37 H 1.09007 * 110.62120 * 190.36692 * 14 12 11 38 38 H 1.08996 * 110.62748 * 241.51044 * 15 14 12 39 39 H 1.08995 * 110.76567 * 118.55020 * 15 14 12 40 40 H 0.97001 * 120.00211 * 180.02562 * 22 21 19 41 41 H 1.08999 * 117.50286 * 215.00524 * 27 5 3 42 42 H 1.08998 * 117.50170 * 0.03421 * 27 5 3 43 43 H 1.09003 * 117.49892 * 359.97438 * 28 5 3 44 44 H 1.08998 * 117.50133 * 144.99896 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 1.5357 2.2157 0.0875 5 6 3.6419 1.1694 -0.1088 6 6 4.3793 0.5750 1.0634 7 8 5.1162 -0.3741 0.8982 8 7 4.2200 1.0981 2.2952 9 6 4.8463 0.4527 3.4517 10 1 5.8062 0.0175 3.1738 11 6 3.9098 -0.6272 4.0474 12 6 3.6445 -0.1113 5.4979 13 1 2.7553 -0.5121 5.9843 14 6 4.9862 -0.3369 6.2579 15 6 5.9245 0.7400 5.6596 16 6 5.0220 1.4697 4.6195 17 1 5.3512 2.4673 4.3289 18 7 3.6794 1.3760 5.2873 19 6 2.7682 2.3471 5.6063 20 1 3.0754 3.3815 5.6529 21 6 1.4497 2.0022 5.8697 22 7 0.7089 2.7723 6.6381 23 14 0.7267 0.4450 5.1336 24 1 0.9980 -0.7020 6.0371 25 1 -0.7400 0.6097 4.9695 26 1 1.3473 0.1892 3.8090 27 6 4.2499 0.9730 -1.4990 28 6 4.2962 2.3492 -0.8303 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.9499 -0.8401 -0.0004 33 1 3.6872 1.8995 2.4166 34 1 2.9792 -0.6823 3.4826 35 1 4.4064 -1.5973 4.0675 36 1 5.3749 -1.3363 6.0625 37 1 4.8527 -0.1781 7.3281 38 1 6.7785 0.2747 5.1675 39 1 6.2586 1.4334 6.4314 40 1 -0.2124 2.5311 6.8225 41 1 5.1832 0.4139 -1.5659 42 1 3.5627 0.8427 -2.3350 43 1 3.6395 3.1236 -1.2267 44 1 5.2601 2.6955 -0.4573 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111139874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:00 Heat of formation + Delta-G solvation = 8.799249 kcal Electronic energy + Delta-G solvation = -27107.083007 eV Core-core repulsion = 23447.919169 eV Total energy + Delta-G solvation = -3659.163837 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.71145 -39.65524 -38.49207 -36.04465 -34.62375 -33.94615 -32.58056 -29.72672 -29.28642 -28.53626 -27.53505 -24.69840 -23.94004 -22.62255 -22.07377 -20.90235 -20.16021 -19.65407 -19.12958 -18.07761 -17.09468 -16.23858 -16.22729 -15.91034 -15.45328 -15.07011 -14.81990 -14.51960 -13.99614 -13.78485 -13.54177 -13.44462 -13.00837 -12.82148 -12.68904 -12.36974 -12.32804 -11.80494 -11.69970 -11.39187 -11.22016 -11.08732 -11.01436 -10.89231 -10.75439 -10.56699 -10.27187 -10.16990 -9.83363 -9.76278 -9.44558 -9.42354 -9.19490 -8.75063 -8.67665 -7.23203 -6.00787 -3.26249 2.39038 2.60971 2.99731 3.24344 3.26577 3.44026 3.46348 3.72033 4.49487 4.52003 4.60420 4.62510 4.67909 4.80342 5.13830 5.16455 5.26421 5.35252 5.39786 5.43503 5.52333 5.59748 5.64910 5.65167 5.76514 5.80016 5.86240 5.90483 5.92370 6.05513 6.15355 6.28184 6.29119 6.39849 6.47542 6.63143 6.70576 6.86200 6.96651 7.33924 7.38592 7.78486 8.11069 8.25692 8.36895 8.68043 9.60123 10.22404 11.15156 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.013050 B = 0.006619 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.108203 B = 4229.007757 C = 5376.012311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.727 5.727 3 C 0.556 3.444 4 O -0.521 6.521 5 C -0.198 4.198 6 C 0.554 3.446 7 O -0.543 6.543 8 N -0.697 5.697 9 C 0.127 3.873 10 H 0.087 0.913 11 C -0.151 4.151 12 C 0.118 3.882 13 H 0.099 0.901 14 C -0.130 4.130 15 C -0.125 4.125 16 C 0.131 3.869 17 H 0.099 0.901 18 N -0.598 5.598 19 C -0.232 4.232 20 H 0.093 0.907 21 C 0.027 3.973 22 N -0.901 5.901 23 Si 0.869 3.131 24 H -0.289 1.289 25 H -0.304 1.304 26 H -0.264 1.264 27 C -0.129 4.129 28 C -0.126 4.126 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.404 0.596 33 H 0.409 0.591 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.263 0.737 41 H 0.115 0.885 42 H 0.104 0.896 43 H 0.113 0.887 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.821 -6.853 -13.481 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.378 5.378 3 C 0.340 3.660 4 O -0.396 6.396 5 C -0.205 4.205 6 C 0.337 3.663 7 O -0.421 6.421 8 N -0.345 5.345 9 C 0.021 3.979 10 H 0.105 0.895 11 C -0.191 4.191 12 C 0.012 3.988 13 H 0.117 0.883 14 C -0.169 4.169 15 C -0.165 4.165 16 C 0.023 3.977 17 H 0.117 0.883 18 N -0.321 5.321 19 C -0.359 4.359 20 H 0.110 0.890 21 C -0.172 4.172 22 N -0.544 5.544 23 Si 0.700 3.300 24 H -0.217 1.217 25 H -0.232 1.232 26 H -0.189 1.189 27 C -0.166 4.166 28 C -0.163 4.163 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.238 0.762 33 H 0.245 0.755 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.544 -6.543 -13.386 16.274 hybrid contribution -0.859 -1.033 -0.200 1.358 sum 5.686 -7.576 -13.586 16.562 Atomic orbital electron populations 1.21590 0.79103 1.02426 1.02609 1.45678 1.07899 1.08642 1.75617 1.19100 0.86962 0.83900 0.76001 1.90748 1.69365 1.31388 1.48108 1.21521 0.92997 1.09787 0.96194 1.18977 0.81298 0.83024 0.82957 1.90671 1.38573 1.28010 1.84829 1.46001 1.52226 1.30442 1.05865 1.22667 0.95496 0.94664 0.85064 0.89501 1.23704 0.99635 0.97245 0.98503 1.23301 0.96442 0.85894 0.93178 0.88349 1.22908 0.96696 0.97228 1.00088 1.22845 0.96839 0.98017 0.98753 1.23206 0.88221 0.96069 0.90183 0.88347 1.46804 1.17057 1.01784 1.66431 1.18548 0.87581 0.88629 1.41099 0.88958 1.24936 0.96063 0.97155 0.99091 1.69879 1.09129 1.39846 1.35542 0.87115 0.77827 0.83839 0.81238 1.21709 1.23246 1.18923 1.23054 1.02894 0.99527 0.91158 1.23064 1.01960 0.91345 0.99958 0.91774 0.92073 0.90527 0.76225 0.75511 0.91478 0.91731 0.92526 0.91938 0.92359 0.91617 0.92720 0.86708 0.87722 0.86866 0.87285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 10.71 59.84 0.64 1.67 16 2 N -0.73 -9.68 5.71 -67.08 -0.38 -10.06 16 3 C 0.56 8.70 7.06 -10.99 -0.08 8.62 16 4 O -0.52 -9.91 16.73 5.55 0.09 -9.82 16 5 C -0.20 -2.74 2.28 -156.82 -0.36 -3.09 16 6 C 0.55 8.90 7.11 -10.99 -0.08 8.82 16 7 O -0.54 -9.65 16.21 5.55 0.09 -9.56 16 8 N -0.70 -11.96 5.08 -51.40 -0.26 -12.22 16 9 C 0.13 2.20 2.79 -65.44 -0.18 2.02 16 10 H 0.09 1.44 7.24 -51.93 -0.38 1.07 16 11 C -0.15 -2.79 6.01 -24.02 -0.14 -2.94 16 12 C 0.12 2.43 3.64 -62.58 -0.23 2.20 16 13 H 0.10 2.23 4.60 -51.93 -0.24 1.99 16 14 C -0.13 -2.22 6.44 -24.23 -0.16 -2.38 16 15 C -0.12 -1.99 6.44 -24.23 -0.16 -2.15 16 16 C 0.13 2.38 5.05 -62.79 -0.32 2.06 16 17 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 18 N -0.60 -13.45 2.71 -145.58 -0.39 -13.85 16 19 C -0.23 -6.29 10.87 -15.06 -0.16 -6.46 16 20 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 21 C 0.03 0.76 5.47 -17.43 -0.10 0.67 16 22 N -0.90 -27.47 13.97 55.49 0.78 -26.70 16 23 Si 0.87 21.96 24.86 -169.99 -4.23 17.74 16 24 H -0.29 -7.11 6.22 56.52 0.35 -6.76 16 25 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 26 H -0.26 -6.47 5.42 56.52 0.31 -6.16 16 27 C -0.13 -1.35 9.75 -26.69 -0.26 -1.61 16 28 C -0.13 -1.42 9.76 -26.70 -0.26 -1.68 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.40 4.65 8.83 -40.82 -0.36 4.29 16 33 H 0.41 7.54 8.64 -40.82 -0.35 7.19 16 34 H 0.07 1.37 5.95 -51.93 -0.31 1.07 16 35 H 0.06 1.07 7.82 -51.93 -0.41 0.66 16 36 H 0.06 0.83 7.82 -51.93 -0.41 0.43 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.06 0.79 7.82 -51.93 -0.41 0.39 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 41 H 0.11 1.18 7.89 -51.93 -0.41 0.77 16 42 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.11 1.26 8.01 -51.93 -0.42 0.85 16 44 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 353.50 15.07 5.33 5.33 Total: -1.00 -33.25 353.50 -7.58 -40.83 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -6.77 Total: 12.55 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -1.84 Total: 5.76 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: -0.26 Total: -62.82 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.18 Total: -19.37 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.23 Total: 17.74 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.25 -7.58 -40.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111139874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.626 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds