Wall clock time and date at job start Fri Apr 10 2020 17:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34773 * 120.00408 * 2 1 4 4 O 1.21283 * 120.00056 * 4.77709 * 3 2 1 5 5 C 1.50703 * 120.00426 * 184.78295 * 3 2 1 6 6 C 1.50701 * 115.54544 * 293.58064 * 5 3 2 7 7 O 1.21286 * 119.99823 * 120.71107 * 6 5 3 8 8 N 1.34776 * 120.00130 * 300.70004 * 6 5 3 9 9 C 1.46496 * 120.00120 * 174.84439 * 8 6 5 10 10 H 1.09002 * 110.55671 * 34.57776 * 9 8 6 11 11 C 1.54855 * 110.62974 * 271.68204 * 9 8 6 12 12 C 1.56225 * 103.26939 * 241.54567 * 11 9 8 13 13 H 1.08994 * 115.55755 * 159.50046 * 12 11 9 14 14 C 1.55846 * 104.99814 * 288.06170 * 12 11 9 15 15 C 1.54854 * 103.44869 * 71.88190 * 14 12 11 16 16 C 1.55845 * 110.62658 * 157.47651 * 9 8 6 17 17 H 1.08999 * 115.56468 * 318.92864 * 16 9 8 18 18 N 1.50244 * 101.04809 * 85.55503 * 16 9 8 19 19 C 1.36934 * 130.83737 * 233.94808 * 18 16 9 20 20 H 1.07997 * 120.00441 * 341.59562 * 19 18 16 21 21 C 1.38811 * 119.99815 * 161.59761 * 19 18 16 22 22 N 1.31621 * 120.00008 * 154.24395 * 21 19 18 23 23 Si 1.86798 * 120.00229 * 334.23958 * 21 19 18 24 24 H 1.48504 * 109.47368 * 87.69629 * 23 21 19 25 25 H 1.48502 * 109.47404 * 207.69888 * 23 21 19 26 26 H 1.48504 * 109.47153 * 327.69507 * 23 21 19 27 27 C 1.52998 * 117.49881 * 79.24398 * 5 3 2 28 28 C 1.52992 * 117.50172 * 147.90899 * 5 3 2 29 29 H 1.09005 * 109.47110 * 300.00013 * 1 2 3 30 30 H 1.08999 * 109.47362 * 59.99682 * 1 2 3 31 31 H 1.09001 * 109.47673 * 180.02562 * 1 2 3 32 32 H 0.97007 * 119.99996 * 180.02562 * 2 1 3 33 33 H 0.97002 * 119.99994 * 355.12797 * 8 6 5 34 34 H 1.08997 * 110.62297 * 359.97438 * 11 9 8 35 35 H 1.08992 * 110.62714 * 123.01739 * 11 9 8 36 36 H 1.08997 * 110.62834 * 313.38730 * 14 12 11 37 37 H 1.09007 * 110.62120 * 190.36692 * 14 12 11 38 38 H 1.08996 * 110.62748 * 241.51044 * 15 14 12 39 39 H 1.08995 * 110.76567 * 118.55020 * 15 14 12 40 40 H 0.97001 * 120.00211 * 180.02562 * 22 21 19 41 41 H 1.08999 * 117.50286 * 215.00524 * 27 5 3 42 42 H 1.08998 * 117.50170 * 0.03421 * 27 5 3 43 43 H 1.09003 * 117.49892 * 359.97438 * 28 5 3 44 44 H 1.08998 * 117.50133 * 144.99896 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 1.5357 2.2157 0.0875 5 6 3.6419 1.1694 -0.1088 6 6 4.3793 0.5750 1.0634 7 8 5.1162 -0.3741 0.8982 8 7 4.2200 1.0981 2.2952 9 6 4.8463 0.4527 3.4517 10 1 5.8062 0.0175 3.1738 11 6 3.9098 -0.6272 4.0474 12 6 3.6445 -0.1113 5.4979 13 1 2.7553 -0.5121 5.9843 14 6 4.9862 -0.3369 6.2579 15 6 5.9245 0.7400 5.6596 16 6 5.0220 1.4697 4.6195 17 1 5.3512 2.4673 4.3289 18 7 3.6794 1.3760 5.2873 19 6 2.7682 2.3471 5.6063 20 1 3.0754 3.3815 5.6529 21 6 1.4497 2.0022 5.8697 22 7 0.7089 2.7723 6.6381 23 14 0.7267 0.4450 5.1336 24 1 0.9980 -0.7020 6.0371 25 1 -0.7400 0.6097 4.9695 26 1 1.3473 0.1892 3.8090 27 6 4.2499 0.9730 -1.4990 28 6 4.2962 2.3492 -0.8303 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.9499 -0.8401 -0.0004 33 1 3.6872 1.8995 2.4166 34 1 2.9792 -0.6823 3.4826 35 1 4.4064 -1.5973 4.0675 36 1 5.3749 -1.3363 6.0625 37 1 4.8527 -0.1781 7.3281 38 1 6.7785 0.2747 5.1675 39 1 6.2586 1.4334 6.4314 40 1 -0.2124 2.5311 6.8225 41 1 5.1832 0.4139 -1.5659 42 1 3.5627 0.8427 -2.3350 43 1 3.6395 3.1236 -1.2267 44 1 5.2601 2.6955 -0.4573 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111139874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:59 Heat of formation + Delta-G solvation = -16.491399 kcal Electronic energy + Delta-G solvation = -27108.179692 eV Core-core repulsion = 23447.919169 eV Total energy + Delta-G solvation = -3660.260522 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.93439 -41.04627 -39.80572 -37.08436 -35.78399 -35.36477 -34.57914 -31.56190 -30.73081 -29.91947 -28.61179 -26.14188 -25.52070 -23.48643 -23.30066 -22.18493 -21.88398 -20.92214 -20.51894 -19.29928 -18.92770 -17.75013 -17.28350 -17.19459 -17.07327 -16.39040 -15.94302 -15.70573 -15.51622 -15.26465 -15.04431 -14.95318 -14.62694 -14.10000 -13.96003 -13.87676 -13.30502 -13.28147 -13.06403 -12.87634 -12.69006 -12.63717 -12.43411 -12.23644 -12.11456 -11.93623 -11.72257 -11.54310 -11.44521 -11.26531 -11.06698 -10.77774 -10.73544 -10.31860 -10.08668 -9.16167 -8.19712 -5.38341 1.17873 1.20864 1.34069 1.42047 1.42735 1.98230 2.06452 2.39196 2.70042 2.89570 3.18816 3.52008 3.53932 3.67140 3.76651 3.79182 3.88557 4.07928 4.21887 4.28578 4.35516 4.44744 4.46239 4.52480 4.59644 4.62124 4.64875 4.77009 4.78549 4.80224 4.83865 5.03748 5.09495 5.11448 5.22707 5.23466 5.33472 5.41146 5.56888 5.63601 6.09984 6.27175 6.43845 6.61710 6.98323 7.06692 7.47295 8.23695 9.00697 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.013050 B = 0.006619 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.108203 B = 4229.007757 C = 5376.012311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.720 5.720 3 C 0.551 3.449 4 O -0.565 6.565 5 C -0.220 4.220 6 C 0.560 3.440 7 O -0.556 6.556 8 N -0.705 5.705 9 C 0.136 3.864 10 H 0.107 0.893 11 C -0.143 4.143 12 C 0.103 3.897 13 H 0.073 0.927 14 C -0.122 4.122 15 C -0.115 4.115 16 C 0.127 3.873 17 H 0.102 0.898 18 N -0.620 5.620 19 C -0.205 4.205 20 H 0.062 0.938 21 C -0.036 4.036 22 N -0.954 5.954 23 Si 0.930 3.070 24 H -0.279 1.279 25 H -0.322 1.322 26 H -0.255 1.255 27 C -0.101 4.101 28 C -0.121 4.121 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.414 0.586 33 H 0.401 0.599 34 H 0.044 0.956 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.258 0.742 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.112 0.888 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.343 -9.284 -15.421 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.371 5.371 3 C 0.336 3.664 4 O -0.444 6.444 5 C -0.227 4.227 6 C 0.345 3.655 7 O -0.435 6.435 8 N -0.352 5.352 9 C 0.030 3.970 10 H 0.125 0.875 11 C -0.183 4.183 12 C -0.002 4.002 13 H 0.091 0.909 14 C -0.161 4.161 15 C -0.154 4.154 16 C 0.021 3.979 17 H 0.120 0.880 18 N -0.343 5.343 19 C -0.334 4.334 20 H 0.080 0.920 21 C -0.230 4.230 22 N -0.601 5.601 23 Si 0.762 3.238 24 H -0.207 1.207 25 H -0.252 1.252 26 H -0.180 1.180 27 C -0.138 4.138 28 C -0.159 4.159 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.131 0.869 32 H 0.250 0.750 33 H 0.235 0.765 34 H 0.063 0.937 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.071 0.929 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.131 0.869 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.135 -9.058 -15.361 20.037 hybrid contribution -1.535 -0.256 0.386 1.604 sum 7.600 -9.313 -14.975 19.203 Atomic orbital electron populations 1.21725 0.78404 1.04480 1.01495 1.45736 1.08548 1.08551 1.74247 1.19464 0.87813 0.83785 0.75307 1.90725 1.70419 1.32910 1.50311 1.21454 0.91643 1.12512 0.97069 1.19186 0.80857 0.82502 0.82929 1.90656 1.39319 1.28481 1.85035 1.46098 1.52338 1.30299 1.06482 1.22594 0.95938 0.93765 0.84656 0.87488 1.23642 0.99210 0.98957 0.96501 1.23446 0.97437 0.84321 0.95030 0.90888 1.22877 0.94710 0.99510 0.99024 1.22813 0.97100 0.97480 0.98029 1.23461 0.86165 0.97160 0.91099 0.88037 1.46886 1.17726 1.02200 1.67531 1.18452 0.88214 0.88630 1.38078 0.92000 1.25475 0.96840 1.00219 1.00474 1.70000 1.09264 1.42448 1.38399 0.86111 0.75797 0.81027 0.80893 1.20712 1.25183 1.17966 1.23199 1.02927 0.98279 0.89419 1.23184 1.01994 0.91497 0.99187 0.94867 0.91222 0.86918 0.75045 0.76498 0.93724 0.88828 0.89062 0.92949 0.88643 0.91757 0.93306 0.85878 0.85822 0.86947 0.86202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.87 10.71 127.77 1.37 3.24 16 2 N -0.72 -18.13 5.71 -484.54 -2.77 -20.90 16 3 C 0.55 16.76 7.06 87.66 0.62 17.37 16 4 O -0.57 -21.69 16.73 -3.04 -0.05 -21.75 16 5 C -0.22 -5.65 2.28 -53.68 -0.12 -5.77 16 6 C 0.56 16.69 7.11 87.66 0.62 17.31 16 7 O -0.56 -17.92 16.21 -3.05 -0.05 -17.97 16 8 N -0.70 -22.93 5.08 -434.91 -2.21 -25.14 16 9 C 0.14 4.30 2.79 46.61 0.13 4.43 16 10 H 0.11 3.04 7.24 -2.39 -0.02 3.02 16 11 C -0.14 -4.87 6.01 32.35 0.19 -4.68 16 12 C 0.10 4.05 3.64 46.36 0.17 4.22 16 13 H 0.07 3.24 4.60 -2.39 -0.01 3.22 16 14 C -0.12 -3.76 6.44 32.21 0.21 -3.56 16 15 C -0.11 -3.23 6.44 32.21 0.21 -3.03 16 16 C 0.13 4.34 5.05 46.23 0.23 4.57 16 17 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 18 N -0.62 -27.56 2.71 -614.49 -1.66 -29.22 16 19 C -0.21 -11.43 10.87 84.03 0.91 -10.51 16 20 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 21 C -0.04 -2.10 5.47 84.86 0.46 -1.64 16 22 N -0.95 -60.89 13.97 21.65 0.30 -60.59 16 23 Si 0.93 47.28 24.86 68.60 1.71 48.98 16 24 H -0.28 -13.55 6.22 99.48 0.62 -12.94 16 25 H -0.32 -17.14 7.11 99.48 0.71 -16.43 16 26 H -0.25 -12.35 5.42 99.48 0.54 -11.81 16 27 C -0.10 -1.80 9.75 30.62 0.30 -1.50 16 28 C -0.12 -2.48 9.76 30.62 0.30 -2.18 16 29 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.41 8.62 8.83 -92.70 -0.82 7.80 16 33 H 0.40 14.59 8.64 -92.71 -0.80 13.79 16 34 H 0.04 1.72 5.95 -2.39 -0.01 1.71 16 35 H 0.09 2.65 7.82 -2.39 -0.02 2.63 16 36 H 0.09 2.21 7.82 -2.39 -0.02 2.19 16 37 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.10 2.05 7.82 -2.39 -0.02 2.03 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 41 H 0.12 2.06 7.89 -2.39 -0.02 2.04 16 42 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.11 2.35 8.01 -2.39 -0.02 2.33 16 44 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -75.11 353.50 0.03 -75.08 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -0.84 Total: 33.22 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: 5.60 Total: 18.27 kcal Atomic # 7 Polarization: -129.51 SS G_CDS: -6.34 Total: -135.84 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -0.10 Total: -39.71 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.71 Total: 48.98 kcal Total: -75.11 0.03 -75.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111139874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.585 kcal (2) G-P(sol) polarization free energy of solvation -75.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds