Wall clock time and date at job start Fri Apr 10 2020 18:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46498 * 119.99868 * 2 1 4 4 C 1.50701 * 109.46735 * 269.99878 * 3 2 1 5 5 O 1.21280 * 120.00421 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99609 * 180.02562 * 4 3 2 7 7 C 1.46504 * 119.99976 * 180.02562 * 6 4 3 8 8 H 1.08998 * 115.49117 * 9.61439 * 7 6 4 9 9 C 1.53000 * 117.44201 * 224.24332 * 7 6 4 10 10 H 1.09005 * 120.26292 * 3.82364 * 9 7 6 11 11 C 1.54387 * 118.12242 * 160.80819 * 9 7 6 12 12 N 1.48142 * 104.61948 * 87.19064 * 11 9 7 13 13 C 1.36935 * 127.84015 * 140.41711 * 12 11 9 14 14 H 1.07995 * 120.00101 * 340.87189 * 13 12 11 15 15 C 1.38813 * 119.99712 * 160.87578 * 13 12 11 16 16 N 1.31629 * 119.99375 * 163.43579 * 15 13 12 17 17 Si 1.86795 * 120.00558 * 343.43572 * 15 13 12 18 18 H 1.48499 * 109.47363 * 85.38183 * 17 15 13 19 19 H 1.48496 * 109.47346 * 205.38882 * 17 15 13 20 20 H 1.48502 * 109.46847 * 325.38470 * 17 15 13 21 21 C 1.48145 * 104.32166 * 320.41153 * 12 11 9 22 22 C 1.52992 * 117.44487 * 155.00175 * 7 6 4 23 23 H 1.09006 * 120.26459 * 356.16466 * 22 7 6 24 24 C 1.34773 * 119.99810 * 179.97438 * 2 1 3 25 25 O 1.21289 * 119.99636 * 180.02562 * 24 2 1 26 26 C 1.50701 * 120.00271 * 359.97438 * 24 2 1 27 27 C 1.52994 * 117.49793 * 248.74938 * 26 24 2 28 28 C 1.52999 * 117.49573 * 180.08678 * 26 24 2 29 29 H 1.09000 * 109.47227 * 90.00358 * 1 2 3 30 30 H 1.08999 * 109.47215 * 210.00077 * 1 2 3 31 31 H 1.09002 * 109.47418 * 329.99924 * 1 2 3 32 32 H 1.09000 * 109.47188 * 150.00068 * 3 2 1 33 33 H 1.09000 * 109.47061 * 29.99656 * 3 2 1 34 34 H 0.97000 * 120.00489 * 359.97438 * 6 4 3 35 35 H 1.08997 * 110.40650 * 328.39954 * 11 9 7 36 36 H 1.09005 * 110.50478 * 206.02263 * 11 9 7 37 37 H 0.97002 * 119.99157 * 179.97438 * 16 15 13 38 38 H 1.09006 * 110.40661 * 280.80400 * 21 12 11 39 39 H 1.09003 * 110.40798 * 158.37452 * 21 12 11 40 40 H 1.09000 * 115.54700 * 34.42401 * 26 24 2 41 41 H 1.09002 * 117.50291 * 0.02562 * 27 26 24 42 42 H 1.09004 * 117.49911 * 145.02481 * 27 26 24 43 43 H 1.09000 * 117.49737 * 214.97331 * 28 26 24 44 44 H 1.08998 * 117.50236 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 8 2.0550 1.0209 -2.3427 6 7 3.1116 2.8510 -1.6671 7 6 3.3553 3.2742 -3.0484 8 1 2.8332 2.7002 -3.8139 9 6 4.7519 3.7977 -3.3895 10 1 5.5408 3.7886 -2.6373 11 6 5.1778 3.8214 -4.8732 12 7 4.6904 5.1248 -5.3814 13 6 5.3215 5.9784 -6.2463 14 1 6.3876 5.9006 -6.4001 15 6 4.5910 6.9439 -6.9253 16 7 5.2086 7.9587 -7.4921 17 14 2.7315 6.8031 -7.0346 18 1 2.1174 7.4053 -5.8241 19 1 2.2509 7.5205 -8.2427 20 1 2.3480 5.3712 -7.1240 21 6 3.3651 5.2951 -4.7417 22 6 3.5566 4.7693 -3.3027 23 1 3.4550 5.4841 -2.4860 24 6 2.1388 -1.1672 0.0005 25 8 3.3517 -1.1672 0.0010 26 6 1.3853 -2.4723 0.0017 27 6 1.4586 -3.3292 1.2671 28 6 2.2075 -3.7626 0.0043 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 3.1499 1.1384 0.5138 33 1 1.6083 2.0284 0.5138 34 1 3.4267 3.3970 -0.9299 35 1 4.7080 3.0017 -5.4167 36 1 6.2628 3.7614 -4.9600 37 1 4.6981 8.6332 -7.9669 38 1 2.6120 4.7055 -5.2646 39 1 3.0824 6.3477 -4.7273 40 1 0.4476 -2.4742 -0.5539 41 1 2.0514 -2.9488 2.0989 42 1 0.5691 -3.8952 1.5438 43 1 1.8103 -4.6136 -0.5491 44 1 3.2933 -3.6676 0.0047 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114363414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:09 Heat of formation + Delta-G solvation = 7.150293 kcal Electronic energy + Delta-G solvation = -24927.827557 eV Core-core repulsion = 21268.592215 eV Total energy + Delta-G solvation = -3659.235342 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.60816 -40.92075 -39.81938 -37.21247 -36.52699 -36.13792 -34.47798 -32.76960 -30.16526 -29.47711 -27.70599 -27.45322 -24.93572 -23.46045 -23.31309 -22.23148 -21.74600 -21.16304 -20.01789 -19.00172 -18.60679 -18.40138 -17.97224 -17.31910 -16.81025 -16.41815 -16.09114 -15.66276 -15.54813 -15.28131 -15.25014 -14.76702 -14.50084 -14.32881 -13.88632 -13.81101 -13.55654 -13.50526 -13.27658 -13.17833 -12.88708 -12.71176 -12.43970 -12.43571 -12.13271 -11.79872 -11.57303 -11.56051 -11.44058 -11.31791 -11.00874 -10.94859 -10.84232 -9.83347 -9.78227 -9.19189 -8.20462 -5.51802 1.24675 1.29160 1.36916 1.44221 1.46961 1.75240 2.14719 2.36548 2.70933 2.89538 3.02667 3.21452 3.49130 3.62465 3.66708 3.77727 3.82187 3.93466 3.97131 4.11381 4.22456 4.25405 4.28937 4.31344 4.36006 4.61901 4.67992 4.69694 4.73294 4.75542 4.87736 4.89558 4.95434 5.01938 5.11212 5.18722 5.21340 5.33082 5.44603 5.54243 6.06606 6.23413 6.45544 6.62431 7.05049 7.17103 7.43658 8.07812 8.99470 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.032623 B = 0.002561 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.090957 B =10931.900530 C =11173.743323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.599 5.599 3 C 0.100 3.900 4 C 0.496 3.504 5 O -0.578 6.578 6 N -0.682 5.682 7 C 0.125 3.875 8 H 0.109 0.891 9 C -0.174 4.174 10 H 0.135 0.865 11 C 0.149 3.851 12 N -0.626 5.626 13 C -0.228 4.228 14 H 0.064 0.936 15 C -0.040 4.040 16 N -0.960 5.960 17 Si 0.951 3.049 18 H -0.265 1.265 19 H -0.307 1.307 20 H -0.268 1.268 21 C 0.122 3.878 22 C -0.167 4.167 23 H 0.142 0.858 24 C 0.537 3.463 25 O -0.586 6.586 26 C -0.204 4.204 27 C -0.126 4.126 28 C -0.163 4.163 29 H 0.047 0.953 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.159 0.841 34 H 0.421 0.579 35 H 0.031 0.969 36 H 0.061 0.939 37 H 0.264 0.736 38 H 0.032 0.968 39 H 0.060 0.940 40 H 0.144 0.856 41 H 0.093 0.907 42 H 0.136 0.864 43 H 0.123 0.877 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.432 -19.455 25.154 34.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.329 5.329 3 C -0.027 4.027 4 C 0.283 3.717 5 O -0.456 6.456 6 N -0.333 5.333 7 C 0.017 3.983 8 H 0.127 0.873 9 C -0.195 4.195 10 H 0.153 0.847 11 C 0.024 3.976 12 N -0.351 5.351 13 C -0.357 4.357 14 H 0.082 0.918 15 C -0.234 4.234 16 N -0.607 5.607 17 Si 0.780 3.220 18 H -0.191 1.191 19 H -0.235 1.235 20 H -0.193 1.193 21 C -0.003 4.003 22 C -0.187 4.187 23 H 0.159 0.841 24 C 0.328 3.672 25 O -0.466 6.466 26 C -0.225 4.225 27 C -0.163 4.163 28 C -0.200 4.200 29 H 0.066 0.934 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.135 0.865 33 H 0.176 0.824 34 H 0.259 0.741 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.162 0.838 41 H 0.112 0.888 42 H 0.154 0.846 43 H 0.141 0.859 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.054 -19.730 24.342 34.341 hybrid contribution -0.092 0.874 -0.822 1.203 sum -14.147 -18.855 23.521 33.300 Atomic orbital electron populations 1.22123 0.76396 1.05796 1.02468 1.47484 1.08733 1.04332 1.72384 1.21517 1.01711 0.87819 0.91618 1.21966 0.76496 0.79917 0.93339 1.90697 1.52489 1.54555 1.47876 1.45166 1.57326 1.23960 1.06897 1.21361 0.97359 0.93943 0.85643 0.87331 1.24273 0.92117 1.04804 0.98284 0.84693 1.21269 0.98525 0.86624 0.91149 1.45658 1.18455 1.19352 1.51638 1.18594 0.91882 1.08798 1.16378 0.91849 1.25680 1.02327 0.96802 0.98634 1.69907 1.37143 1.12694 1.40926 0.85885 0.81691 0.77948 0.76524 1.19149 1.23528 1.19332 1.21690 0.88009 0.99217 0.91358 1.24143 1.03992 0.92152 0.98461 0.84083 1.20359 0.86974 0.85936 0.73968 1.90671 1.16072 1.88000 1.51904 1.22269 1.03248 0.89136 1.07831 1.23062 1.03599 0.99705 0.89977 1.23034 0.98939 0.95851 1.02175 0.93401 0.88206 0.88154 0.86498 0.82407 0.74086 0.95108 0.92025 0.92727 0.95012 0.92236 0.83797 0.88828 0.84571 0.85903 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 10.05 127.77 1.28 1.96 16 2 N -0.60 -10.18 2.36 -851.13 -2.01 -12.19 16 3 C 0.10 1.50 5.93 85.63 0.51 2.01 16 4 C 0.50 11.90 7.90 87.66 0.69 12.59 16 5 O -0.58 -19.75 16.00 -3.03 -0.05 -19.80 16 6 N -0.68 -14.51 5.56 -442.53 -2.46 -16.97 16 7 C 0.12 3.64 5.98 44.99 0.27 3.91 16 8 H 0.11 3.81 7.40 -2.39 -0.02 3.79 16 9 C -0.17 -5.51 7.06 -9.89 -0.07 -5.58 16 10 H 0.14 3.66 8.14 -2.38 -0.02 3.64 16 11 C 0.15 6.08 7.04 86.53 0.61 6.68 16 12 N -0.63 -30.86 3.19 -688.15 -2.20 -33.06 16 13 C -0.23 -13.44 10.78 84.03 0.91 -12.53 16 14 H 0.06 4.03 8.06 -2.91 -0.02 4.00 16 15 C -0.04 -2.42 5.49 84.86 0.47 -1.95 16 16 N -0.96 -61.32 13.97 21.65 0.30 -61.02 16 17 Si 0.95 47.67 24.49 68.60 1.68 49.35 16 18 H -0.27 -12.28 6.36 99.48 0.63 -11.65 16 19 H -0.31 -15.49 7.11 99.48 0.71 -14.79 16 20 H -0.27 -13.16 6.33 99.48 0.63 -12.53 16 21 C 0.12 5.20 4.49 86.54 0.39 5.59 16 22 C -0.17 -5.27 7.06 -9.89 -0.07 -5.34 16 23 H 0.14 3.65 8.14 -2.38 -0.02 3.63 16 24 C 0.54 12.02 7.46 87.66 0.65 12.68 16 25 O -0.59 -18.26 15.84 -3.06 -0.05 -18.30 16 26 C -0.20 -3.03 4.79 -11.54 -0.06 -3.09 16 27 C -0.13 -1.22 10.24 30.62 0.31 -0.91 16 28 C -0.16 -2.37 10.05 30.62 0.31 -2.07 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 0.47 6.64 -2.39 -0.02 0.45 16 31 H 0.10 0.39 7.89 -2.39 -0.02 0.37 16 32 H 0.12 1.79 7.42 -2.39 -0.02 1.77 16 33 H 0.16 0.82 7.89 -2.39 -0.02 0.80 16 34 H 0.42 5.62 8.83 -92.71 -0.82 4.80 16 35 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 37 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 38 H 0.03 1.39 6.80 -2.38 -0.02 1.37 16 39 H 0.06 2.68 5.06 -2.39 -0.01 2.67 16 40 H 0.14 1.55 7.27 -2.39 -0.02 1.53 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.08 1.64 7.67 -2.39 -0.02 1.62 16 Total: -1.00 -85.84 359.87 1.47 -84.37 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.05 Total: 13.66 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 6.20 Total: 13.96 kcal Atomic # 7 Polarization: -116.88 SS G_CDS: -6.37 Total: -123.24 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -0.10 Total: -38.10 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 1.68 Total: 49.35 kcal Total: -85.84 1.47 -84.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114363414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.520 kcal (2) G-P(sol) polarization free energy of solvation -85.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds