Wall clock time and date at job start Fri Apr 10 2020 17:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46800 * 2 1 4 4 N 1.28717 * 126.03295 * 272.82789 * 3 2 1 5 5 N 1.28513 * 110.63595 * 180.29930 * 4 3 2 6 6 C 1.33316 * 109.43811 * 359.71805 * 5 4 3 7 7 C 1.37010 * 106.37602 * 359.97438 * 6 5 4 8 8 C 1.47231 * 127.19042 * 179.97438 * 7 6 5 9 9 O 1.21619 * 119.99766 * 185.02283 * 8 7 6 10 10 N 1.34771 * 120.00046 * 5.02596 * 8 7 6 11 11 C 1.46504 * 120.00118 * 174.60176 * 10 8 7 12 12 H 1.09000 * 110.88308 * 34.29496 * 11 10 8 13 13 C 1.54906 * 111.00466 * 270.41707 * 11 10 8 14 14 N 1.47426 * 104.83429 * 278.93626 * 13 11 10 15 15 C 1.36934 * 125.65097 * 155.83587 * 14 13 11 16 16 H 1.08002 * 120.00086 * 354.12721 * 15 14 13 17 17 C 1.38817 * 119.99907 * 174.12818 * 15 14 13 18 18 N 1.31621 * 119.99981 * 6.37420 * 17 15 14 19 19 Si 1.86802 * 120.00033 * 186.37012 * 17 15 14 20 20 H 1.48497 * 109.47132 * 94.98972 * 19 17 15 21 21 H 1.48498 * 109.47016 * 214.99290 * 19 17 15 22 22 H 1.48497 * 109.46961 * 334.98932 * 19 17 15 23 23 C 1.47026 * 108.70006 * 335.86802 * 14 13 11 24 24 C 1.54424 * 107.28008 * 1.06242 * 23 14 13 25 25 C 1.52997 * 110.72748 * 263.84258 * 24 23 14 26 26 C 1.53006 * 110.76004 * 140.54095 * 24 23 14 27 27 H 1.08997 * 109.47074 * 60.00095 * 1 2 3 28 28 H 1.09005 * 109.46954 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47169 * 299.99611 * 1 2 3 30 30 H 1.08996 * 109.47263 * 239.99983 * 2 1 3 31 31 H 1.08997 * 109.47074 * 119.99905 * 2 1 3 32 32 H 1.08008 * 126.81628 * 179.97438 * 6 5 4 33 33 H 0.97003 * 120.00594 * 354.59568 * 10 8 7 34 34 H 1.09004 * 110.36757 * 37.76643 * 13 11 10 35 35 H 1.08994 * 110.37290 * 160.09521 * 13 11 10 36 36 H 0.96998 * 120.00125 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.88310 * 120.47708 * 23 14 13 38 38 H 1.08997 * 109.88610 * 241.64117 * 23 14 13 39 39 H 1.08996 * 109.47257 * 173.46631 * 25 24 23 40 40 H 1.08996 * 109.47649 * 293.47275 * 25 24 23 41 41 H 1.09007 * 109.46678 * 53.46809 * 25 24 23 42 42 H 1.09003 * 109.47025 * 306.51077 * 26 24 23 43 43 H 1.08998 * 109.47291 * 66.51320 * 26 24 23 44 44 H 1.09002 * 109.46765 * 186.51159 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2222 2.1123 -1.0396 5 7 2.6570 3.2727 -0.6992 6 6 2.7485 3.3400 0.6291 7 6 2.3348 2.1244 1.1070 8 6 2.2547 1.7021 2.5151 9 8 1.9539 0.5563 2.7901 10 7 2.5145 2.5854 3.4993 11 6 2.3204 2.2001 4.8994 12 1 2.5596 1.1473 5.0494 13 6 0.8772 2.5137 5.3667 14 7 0.8892 3.9521 5.6895 15 6 -0.2027 4.7784 5.6931 16 1 -1.1596 4.4104 5.3533 17 6 -0.0798 6.0892 6.1334 18 7 1.1070 6.5758 6.4284 19 14 -1.5989 7.1624 6.3073 20 1 -2.0838 7.1105 7.7099 21 1 -1.2581 8.5636 5.9528 22 1 -2.6622 6.6662 5.3972 23 6 2.2679 4.3527 6.0062 24 6 3.1577 3.1009 5.8454 25 6 3.3751 2.4140 7.1951 26 6 4.4963 3.4662 5.2005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.0826 4.1851 1.2129 33 1 2.8301 3.4762 3.2808 34 1 0.1665 2.3108 4.5655 35 1 0.6294 1.9283 6.2521 36 1 1.1929 7.4915 6.7364 37 1 2.5954 5.1311 5.3171 38 1 2.3219 4.7165 7.0323 39 1 3.9055 1.4740 7.0432 40 1 3.9643 3.0632 7.8426 41 1 2.4099 2.2153 7.6612 42 1 4.3164 4.0044 4.2698 43 1 5.0671 4.0980 5.8811 44 1 5.0590 2.5564 4.9913 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974571894.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:27 Heat of formation + Delta-G solvation = 85.948416 kcal Electronic energy + Delta-G solvation = -26564.659769 eV Core-core repulsion = 22941.134122 eV Total energy + Delta-G solvation = -3623.525647 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.31871 -39.88239 -38.02012 -35.58042 -33.99016 -33.17085 -31.48082 -30.95964 -30.88806 -27.87934 -26.84465 -25.80416 -24.95819 -24.02288 -23.21519 -21.98264 -20.59863 -20.04497 -18.83108 -17.81330 -17.01649 -16.74864 -16.46102 -15.93172 -15.03443 -14.80051 -14.61876 -14.37592 -14.06086 -13.75254 -13.62495 -13.14413 -13.05187 -12.92134 -12.44895 -12.36832 -12.10514 -11.99302 -11.86723 -11.74944 -11.47967 -11.23915 -11.02779 -10.93251 -10.82486 -10.41177 -10.35116 -10.27039 -10.07036 -9.96229 -9.88986 -9.58367 -9.52772 -8.86047 -8.60392 -6.87671 -5.78516 -3.10388 0.92823 2.02676 2.29634 3.09672 3.25395 3.37196 3.43420 3.44455 4.26133 4.43714 4.46080 4.66401 4.67399 4.90270 4.95930 4.99504 5.22771 5.26143 5.33324 5.34389 5.48472 5.54618 5.68351 5.75798 5.80705 5.84073 5.93022 5.96399 6.04715 6.15895 6.25544 6.29732 6.35676 6.44288 6.52893 6.62038 6.65621 6.86435 7.44471 7.51641 7.59327 7.75321 8.14365 8.18617 8.32566 9.16162 9.75946 10.41455 11.33471 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.013479 B = 0.004650 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.827877 B = 6019.431676 C = 6832.656211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.254 5.254 4 N -0.065 5.065 5 N -0.275 5.275 6 C 0.003 3.997 7 C -0.063 4.063 8 C 0.595 3.405 9 O -0.545 6.545 10 N -0.682 5.682 11 C 0.138 3.862 12 H 0.094 0.906 13 C 0.126 3.874 14 N -0.602 5.602 15 C -0.228 4.228 16 H 0.076 0.924 17 C -0.004 4.004 18 N -0.920 5.920 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.187 3.813 24 C -0.103 4.103 25 C -0.126 4.126 26 C -0.129 4.129 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.125 0.875 32 H 0.198 0.802 33 H 0.406 0.594 34 H 0.040 0.960 35 H 0.031 0.969 36 H 0.252 0.748 37 H 0.044 0.956 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.059 0.941 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.719 -11.633 -7.129 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.016 4.016 3 N -0.051 5.051 4 N -0.046 5.046 5 N -0.138 5.138 6 C -0.158 4.158 7 C -0.198 4.198 8 C 0.378 3.622 9 O -0.424 6.424 10 N -0.331 5.331 11 C 0.033 3.967 12 H 0.112 0.888 13 C -0.001 4.001 14 N -0.329 5.329 15 C -0.356 4.356 16 H 0.094 0.906 17 C -0.201 4.201 18 N -0.567 5.567 19 Si 0.739 3.261 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.207 1.207 23 C 0.063 3.937 24 C -0.105 4.105 25 C -0.184 4.184 26 C -0.186 4.186 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.122 0.878 31 H 0.143 0.857 32 H 0.215 0.785 33 H 0.243 0.757 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.366 -12.178 -8.413 15.744 hybrid contribution -0.742 1.058 1.157 1.735 sum 4.624 -11.120 -7.256 14.060 Atomic orbital electron populations 1.22099 0.92699 1.03969 1.03564 1.22420 0.96828 0.75781 1.06618 1.47847 1.40373 1.13469 1.03444 1.78213 1.15857 0.98649 1.11861 1.74884 1.15695 1.10536 1.12642 1.23939 1.02670 0.97240 0.91942 1.22042 1.12285 0.94270 0.91162 1.16627 0.77718 0.85335 0.82473 1.90747 1.49544 1.18387 1.83705 1.45572 1.65561 1.16115 1.05884 1.22317 0.97473 0.98658 0.78253 0.88826 1.21942 0.93355 0.87654 0.97158 1.44430 1.04454 1.02733 1.81252 1.19026 0.87898 0.91988 1.36659 0.90609 1.24771 0.96827 0.97160 1.01319 1.69939 1.20459 1.15205 1.51091 0.86152 0.82189 0.79917 0.77845 1.21631 1.21756 1.20735 1.21332 0.81964 0.89723 1.00707 1.22235 0.95484 0.98193 0.94540 1.21673 1.01828 0.99197 0.95659 1.21677 0.96082 1.00583 1.00289 0.91608 0.89581 0.91234 0.87769 0.85724 0.78519 0.75728 0.94137 0.95132 0.93730 0.93760 0.93162 0.93506 0.92288 0.92114 0.92998 0.92221 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 10.24 37.16 0.38 -1.18 16 2 C 0.10 1.05 6.73 -4.04 -0.03 1.02 16 3 N -0.25 -3.42 3.39 -57.37 -0.19 -3.61 16 4 N -0.07 -0.98 13.14 60.35 0.79 -0.18 16 5 N -0.27 -4.27 12.35 30.48 0.38 -3.89 16 6 C 0.00 0.04 11.55 -17.35 -0.20 -0.16 16 7 C -0.06 -0.90 6.98 -82.33 -0.57 -1.48 16 8 C 0.59 8.99 7.80 -12.61 -0.10 8.90 16 9 O -0.55 -9.01 14.44 5.26 0.08 -8.94 16 10 N -0.68 -10.24 4.61 -52.86 -0.24 -10.48 16 11 C 0.14 2.24 2.65 -65.78 -0.17 2.07 16 12 H 0.09 1.47 7.46 -51.93 -0.39 1.08 16 13 C 0.13 2.49 6.62 -2.53 -0.02 2.47 16 14 N -0.60 -14.16 3.39 -170.01 -0.58 -14.73 16 15 C -0.23 -6.05 10.27 -15.06 -0.15 -6.21 16 16 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 17 C 0.00 -0.12 5.48 -17.43 -0.10 -0.21 16 18 N -0.92 -25.56 10.36 55.49 0.57 -24.99 16 19 Si 0.91 21.60 29.56 -169.99 -5.02 16.58 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.19 4.04 4.55 -3.01 -0.01 4.02 16 24 C -0.10 -1.66 0.81 -152.62 -0.12 -1.78 16 25 C -0.13 -1.84 8.41 37.16 0.31 -1.53 16 26 C -0.13 -1.74 8.08 37.16 0.30 -1.44 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.12 1.32 6.23 -51.93 -0.32 1.00 16 32 H 0.20 2.17 7.56 -52.48 -0.40 1.78 16 33 H 0.41 5.80 6.06 -40.82 -0.25 5.55 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.60 7.80 -51.93 -0.41 0.20 16 36 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.04 1.05 7.17 -51.93 -0.37 0.68 16 38 H 0.05 1.24 7.07 -51.93 -0.37 0.87 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.96 7.58 -51.93 -0.39 0.57 16 42 H 0.05 0.68 6.42 -51.93 -0.33 0.34 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 355.49 15.07 5.36 5.36 Total: -1.00 -30.90 355.49 -5.93 -36.83 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.58 Total: 3.57 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -0.49 Total: 4.49 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.73 Total: -57.89 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.08 Total: -8.94 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.90 -5.93 -36.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974571894.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.774 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds