Wall clock time and date at job start Fri Apr 10 2020 17:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46800 * 2 1 4 4 N 1.28717 * 126.03295 * 272.82789 * 3 2 1 5 5 N 1.28513 * 110.63595 * 180.29930 * 4 3 2 6 6 C 1.33316 * 109.43811 * 359.71805 * 5 4 3 7 7 C 1.37010 * 106.37602 * 359.97438 * 6 5 4 8 8 C 1.47231 * 127.19042 * 179.97438 * 7 6 5 9 9 O 1.21619 * 119.99766 * 185.02283 * 8 7 6 10 10 N 1.34771 * 120.00046 * 5.02596 * 8 7 6 11 11 C 1.46504 * 120.00118 * 174.60176 * 10 8 7 12 12 H 1.09000 * 110.88308 * 34.29496 * 11 10 8 13 13 C 1.54906 * 111.00466 * 270.41707 * 11 10 8 14 14 N 1.47426 * 104.83429 * 278.93626 * 13 11 10 15 15 C 1.36934 * 125.65097 * 155.83587 * 14 13 11 16 16 H 1.08002 * 120.00086 * 354.12721 * 15 14 13 17 17 C 1.38817 * 119.99907 * 174.12818 * 15 14 13 18 18 N 1.31621 * 119.99981 * 6.37420 * 17 15 14 19 19 Si 1.86802 * 120.00033 * 186.37012 * 17 15 14 20 20 H 1.48497 * 109.47132 * 94.98972 * 19 17 15 21 21 H 1.48498 * 109.47016 * 214.99290 * 19 17 15 22 22 H 1.48497 * 109.46961 * 334.98932 * 19 17 15 23 23 C 1.47026 * 108.70006 * 335.86802 * 14 13 11 24 24 C 1.54424 * 107.28008 * 1.06242 * 23 14 13 25 25 C 1.52997 * 110.72748 * 263.84258 * 24 23 14 26 26 C 1.53006 * 110.76004 * 140.54095 * 24 23 14 27 27 H 1.08997 * 109.47074 * 60.00095 * 1 2 3 28 28 H 1.09005 * 109.46954 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47169 * 299.99611 * 1 2 3 30 30 H 1.08996 * 109.47263 * 239.99983 * 2 1 3 31 31 H 1.08997 * 109.47074 * 119.99905 * 2 1 3 32 32 H 1.08008 * 126.81628 * 179.97438 * 6 5 4 33 33 H 0.97003 * 120.00594 * 354.59568 * 10 8 7 34 34 H 1.09004 * 110.36757 * 37.76643 * 13 11 10 35 35 H 1.08994 * 110.37290 * 160.09521 * 13 11 10 36 36 H 0.96998 * 120.00125 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.88310 * 120.47708 * 23 14 13 38 38 H 1.08997 * 109.88610 * 241.64117 * 23 14 13 39 39 H 1.08996 * 109.47257 * 173.46631 * 25 24 23 40 40 H 1.08996 * 109.47649 * 293.47275 * 25 24 23 41 41 H 1.09007 * 109.46678 * 53.46809 * 25 24 23 42 42 H 1.09003 * 109.47025 * 306.51077 * 26 24 23 43 43 H 1.08998 * 109.47291 * 66.51320 * 26 24 23 44 44 H 1.09002 * 109.46765 * 186.51159 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2222 2.1123 -1.0396 5 7 2.6570 3.2727 -0.6992 6 6 2.7485 3.3400 0.6291 7 6 2.3348 2.1244 1.1070 8 6 2.2547 1.7021 2.5151 9 8 1.9539 0.5563 2.7901 10 7 2.5145 2.5854 3.4993 11 6 2.3204 2.2001 4.8994 12 1 2.5596 1.1473 5.0494 13 6 0.8772 2.5137 5.3667 14 7 0.8892 3.9521 5.6895 15 6 -0.2027 4.7784 5.6931 16 1 -1.1596 4.4104 5.3533 17 6 -0.0798 6.0892 6.1334 18 7 1.1070 6.5758 6.4284 19 14 -1.5989 7.1624 6.3073 20 1 -2.0838 7.1105 7.7099 21 1 -1.2581 8.5636 5.9528 22 1 -2.6622 6.6662 5.3972 23 6 2.2679 4.3527 6.0062 24 6 3.1577 3.1009 5.8454 25 6 3.3751 2.4140 7.1951 26 6 4.4963 3.4662 5.2005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.0826 4.1851 1.2129 33 1 2.8301 3.4762 3.2808 34 1 0.1665 2.3108 4.5655 35 1 0.6294 1.9283 6.2521 36 1 1.1929 7.4915 6.7364 37 1 2.5954 5.1311 5.3171 38 1 2.3219 4.7165 7.0323 39 1 3.9055 1.4740 7.0432 40 1 3.9643 3.0632 7.8426 41 1 2.4099 2.2153 7.6612 42 1 4.3164 4.0044 4.2698 43 1 5.0671 4.0980 5.8811 44 1 5.0590 2.5564 4.9913 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974571894.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:26 Heat of formation + Delta-G solvation = 65.447769 kcal Electronic energy + Delta-G solvation = -26565.548744 eV Core-core repulsion = 22941.134122 eV Total energy + Delta-G solvation = -3624.414622 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.40871 -41.21227 -39.40993 -36.56793 -35.61884 -34.54887 -32.98944 -32.40369 -31.81939 -29.43492 -28.02746 -27.56607 -26.08270 -25.24171 -24.53069 -23.18077 -22.01353 -21.39402 -20.11600 -19.10885 -18.71471 -17.95823 -17.58668 -17.25549 -16.52397 -16.12729 -15.87224 -15.75980 -15.36555 -15.13012 -14.95583 -14.48393 -14.30188 -13.97749 -13.76416 -13.62182 -13.24156 -13.23723 -13.21357 -12.99695 -12.88063 -12.69077 -12.61782 -12.46834 -12.02645 -12.01202 -11.84217 -11.71785 -11.60386 -11.33308 -11.20245 -11.11958 -10.68814 -10.65083 -10.11324 -8.81781 -7.84033 -5.16102 -0.18244 1.01866 1.17586 1.46109 1.47335 1.55067 1.92433 2.09135 2.49905 3.22923 3.34799 3.40253 3.58043 3.66338 3.71258 3.88081 3.92153 3.98542 4.12366 4.24245 4.30715 4.43672 4.45930 4.61162 4.71886 4.77215 4.79918 4.90672 4.91323 4.94307 5.04004 5.07532 5.08475 5.25338 5.34495 5.35800 5.40791 5.48734 5.52958 5.76459 5.84149 6.22719 6.35460 6.93424 7.14820 7.21349 7.80341 8.44418 9.25648 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.013479 B = 0.004650 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.827877 B = 6019.431676 C = 6832.656211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.096 3.904 3 N -0.247 5.247 4 N -0.074 5.074 5 N -0.300 5.300 6 C 0.007 3.993 7 C -0.076 4.076 8 C 0.601 3.399 9 O -0.558 6.558 10 N -0.680 5.680 11 C 0.153 3.847 12 H 0.111 0.889 13 C 0.123 3.877 14 N -0.618 5.618 15 C -0.239 4.239 16 H 0.071 0.929 17 C -0.053 4.053 18 N -0.940 5.940 19 Si 0.966 3.034 20 H -0.289 1.289 21 H -0.294 1.294 22 H -0.275 1.275 23 C 0.199 3.801 24 C -0.090 4.090 25 C -0.123 4.123 26 C -0.125 4.125 27 H 0.063 0.937 28 H 0.114 0.886 29 H 0.042 0.958 30 H 0.133 0.867 31 H 0.123 0.877 32 H 0.219 0.781 33 H 0.410 0.590 34 H 0.028 0.972 35 H 0.035 0.965 36 H 0.247 0.753 37 H 0.017 0.983 38 H 0.012 0.988 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.042 0.958 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.431 -13.145 -7.755 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.023 4.023 3 N -0.045 5.045 4 N -0.054 5.054 5 N -0.162 5.162 6 C -0.154 4.154 7 C -0.210 4.210 8 C 0.386 3.614 9 O -0.437 6.437 10 N -0.330 5.330 11 C 0.048 3.952 12 H 0.129 0.871 13 C -0.004 4.004 14 N -0.344 5.344 15 C -0.368 4.368 16 H 0.089 0.911 17 C -0.247 4.247 18 N -0.589 5.589 19 Si 0.795 3.205 20 H -0.217 1.217 21 H -0.221 1.221 22 H -0.200 1.200 23 C 0.074 3.926 24 C -0.091 4.091 25 C -0.181 4.181 26 C -0.182 4.182 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.061 0.939 30 H 0.151 0.849 31 H 0.141 0.859 32 H 0.236 0.764 33 H 0.247 0.753 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.036 0.964 38 H 0.030 0.970 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.077 -13.721 -9.060 17.530 hybrid contribution -1.026 1.459 1.340 2.231 sum 5.051 -12.262 -7.720 15.345 Atomic orbital electron populations 1.22080 0.92162 1.05414 1.02083 1.22749 0.97209 0.74400 1.07947 1.48169 1.39284 1.14219 1.02865 1.78160 1.16135 0.98816 1.12296 1.74868 1.16743 1.11078 1.13499 1.24341 1.01731 0.97735 0.91580 1.21980 1.13322 0.94755 0.90971 1.16641 0.77076 0.85015 0.82701 1.90740 1.50063 1.18939 1.83979 1.45509 1.65629 1.16395 1.05446 1.22122 0.94797 0.99449 0.78824 0.87114 1.22070 0.95681 0.85700 0.96899 1.44635 1.04602 1.04105 1.81108 1.19278 0.88827 0.92635 1.36037 0.91106 1.25434 0.99124 0.98366 1.01807 1.70124 1.21804 1.14997 1.51955 0.85252 0.79567 0.78085 0.77578 1.21666 1.22068 1.20045 1.21089 0.82168 0.91787 0.97530 1.22118 0.95735 0.95438 0.95814 1.21654 1.01373 1.00587 0.94443 1.21661 0.94483 1.01894 1.00201 0.91766 0.86725 0.93867 0.84868 0.85949 0.76428 0.75266 0.95413 0.94767 0.94370 0.96449 0.96989 0.90334 0.91960 0.93896 0.92742 0.91912 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 10.24 71.98 0.74 -2.03 16 2 C 0.10 1.76 6.73 86.38 0.58 2.34 16 3 N -0.25 -6.30 3.39 -335.42 -1.14 -7.44 16 4 N -0.07 -2.11 13.14 37.02 0.49 -1.63 16 5 N -0.30 -9.02 12.35 -57.50 -0.71 -9.73 16 6 C 0.01 0.19 11.55 84.18 0.97 1.16 16 7 C -0.08 -2.06 6.98 40.41 0.28 -1.78 16 8 C 0.60 17.25 7.80 86.61 0.68 17.92 16 9 O -0.56 -17.45 14.44 -4.09 -0.06 -17.51 16 10 N -0.68 -19.39 4.61 -439.41 -2.03 -21.41 16 11 C 0.15 4.73 2.65 46.38 0.12 4.85 16 12 H 0.11 3.15 7.46 -2.39 -0.02 3.13 16 13 C 0.12 4.82 6.62 86.85 0.57 5.40 16 14 N -0.62 -29.50 3.39 -691.79 -2.35 -31.84 16 15 C -0.24 -12.92 10.27 84.04 0.86 -12.06 16 16 H 0.07 3.80 7.84 -2.91 -0.02 3.78 16 17 C -0.05 -2.93 5.48 84.86 0.47 -2.46 16 18 N -0.94 -53.55 10.36 21.65 0.22 -53.33 16 19 Si 0.97 45.01 29.56 68.60 2.03 47.03 16 20 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 C 0.20 8.70 4.55 86.76 0.39 9.10 16 24 C -0.09 -2.76 0.81 -50.96 -0.04 -2.80 16 25 C -0.12 -3.36 8.41 71.98 0.61 -2.75 16 26 C -0.12 -3.07 8.08 71.98 0.58 -2.49 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.12 2.36 6.23 -2.39 -0.01 2.35 16 32 H 0.22 4.50 7.56 -2.91 -0.02 4.48 16 33 H 0.41 11.15 6.06 -92.71 -0.56 10.59 16 34 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.03 1.34 7.80 -2.39 -0.02 1.32 16 36 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 37 H 0.02 0.84 7.17 -2.39 -0.02 0.83 16 38 H 0.01 0.61 7.07 -2.39 -0.02 0.59 16 39 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.04 1.31 7.58 -2.38 -0.02 1.30 16 42 H 0.05 1.31 6.42 -2.39 -0.02 1.30 16 43 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -67.53 355.49 3.72 -63.81 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.45 Total: 17.65 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 6.81 Total: 14.40 kcal Atomic # 7 Polarization: -119.87 SS G_CDS: -5.51 Total: -125.38 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.06 Total: -17.51 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -67.53 3.72 -63.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974571894.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.257 kcal (2) G-P(sol) polarization free energy of solvation -67.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds