Wall clock time and date at job start Fri Apr 10 2020 17:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47061 * 2 1 4 4 C 1.34807 * 126.59524 * 124.70823 * 3 2 1 5 5 C 1.36596 * 106.84342 * 180.26460 * 4 3 2 6 6 C 1.47517 * 125.77412 * 180.02562 * 5 4 3 7 7 O 1.21595 * 120.00238 * 359.96866 * 6 5 4 8 8 N 1.34774 * 119.99996 * 179.97438 * 6 5 4 9 9 C 1.46507 * 120.00138 * 180.02562 * 8 6 5 10 10 H 1.08993 * 110.88385 * 34.29125 * 9 8 6 11 11 C 1.54913 * 111.00103 * 270.41282 * 9 8 6 12 12 N 1.47425 * 104.83148 * 278.93390 * 11 9 8 13 13 C 1.36936 * 125.64752 * 155.83767 * 12 11 9 14 14 H 1.07995 * 120.00512 * 180.02562 * 13 12 11 15 15 C 1.38824 * 119.99954 * 0.02562 * 13 12 11 16 16 N 1.31614 * 119.99959 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99714 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47659 * 60.00377 * 17 15 13 19 19 H 1.48504 * 109.46839 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47161 * 299.99875 * 17 15 13 21 21 C 1.47016 * 108.70348 * 335.87202 * 12 11 9 22 22 C 1.54425 * 107.28374 * 1.06027 * 21 12 11 23 23 C 1.52997 * 110.72641 * 263.84752 * 22 21 12 24 24 C 1.52998 * 110.76188 * 140.54181 * 22 21 12 25 25 N 1.34405 * 108.45326 * 0.02562 * 5 4 3 26 26 N 1.28755 * 109.52720 * 359.97438 * 25 5 4 27 27 H 1.08999 * 109.47384 * 299.99870 * 1 2 3 28 28 H 1.08998 * 109.46963 * 60.00214 * 1 2 3 29 29 H 1.09001 * 109.47239 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47384 * 240.00130 * 2 1 3 31 31 H 1.08997 * 109.47408 * 120.00081 * 2 1 3 32 32 H 1.08000 * 126.58225 * 0.25142 * 4 3 2 33 33 H 0.97002 * 120.00266 * 359.97438 * 8 6 5 34 34 H 1.09004 * 110.36700 * 37.77487 * 11 9 8 35 35 H 1.08999 * 110.36831 * 160.09578 * 11 9 8 36 36 H 0.96995 * 120.00243 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.88291 * 120.47597 * 21 12 11 38 38 H 1.08994 * 109.88089 * 241.48655 * 21 12 11 39 39 H 1.09001 * 109.47005 * 173.46118 * 23 22 21 40 40 H 1.09000 * 109.47362 * 293.46681 * 23 22 21 41 41 H 1.09001 * 109.46988 * 53.46915 * 23 22 21 42 42 H 1.09000 * 109.47297 * 306.51153 * 24 22 21 43 43 H 1.09003 * 109.47421 * 66.51441 * 24 22 21 44 44 H 1.09003 * 109.47558 * 186.51699 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8672 1.9336 0.8897 5 6 3.0432 3.2349 0.5137 6 6 3.8955 4.2234 1.2011 7 8 4.5175 3.9030 2.1956 8 7 3.9848 5.4818 0.7269 9 6 4.8317 6.4635 1.4092 10 1 5.7170 5.9870 1.8300 11 6 4.0354 7.2194 2.5020 12 7 3.2906 8.2622 1.7731 13 6 2.1346 8.8613 2.1972 14 1 1.6633 9.6178 1.5874 15 6 1.5685 8.4962 3.4110 16 7 2.1431 7.5745 4.1544 17 14 -0.0088 9.3130 3.9891 18 1 -1.0876 9.0618 3.0002 19 1 -0.4031 8.7512 5.3060 20 1 0.2109 10.7757 4.1212 21 6 3.9941 8.5516 0.5150 22 6 5.2242 7.6201 0.4523 23 6 6.4753 8.3405 0.9586 24 6 5.4368 7.0975 -0.9698 25 7 2.3085 3.4623 -0.5885 26 7 1.6875 2.3848 -0.9217 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.3209 1.4416 1.7374 33 1 3.4889 5.7375 -0.0666 34 1 3.3455 6.5422 3.0055 35 1 4.7164 7.6730 3.2222 36 1 1.7474 7.3191 5.0023 37 1 3.3363 8.3543 -0.3314 38 1 4.3142 9.5934 0.5006 39 1 7.3035 7.6340 1.0153 40 1 6.7325 9.1476 0.2726 41 1 6.2814 8.7531 1.9487 42 1 4.5156 6.6396 -1.3303 43 1 5.7112 7.9252 -1.6239 44 1 6.2351 6.3552 -0.9687 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977414210.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:36 Heat of formation + Delta-G solvation = 86.448913 kcal Electronic energy + Delta-G solvation = -26132.593147 eV Core-core repulsion = 22509.089203 eV Total energy + Delta-G solvation = -3623.503944 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.10323 -39.45123 -37.67708 -35.51495 -33.74140 -32.92014 -31.35930 -30.63913 -30.32014 -28.00273 -26.73839 -25.52998 -24.76959 -23.92565 -22.65574 -21.76037 -20.44446 -19.64869 -18.73501 -17.73130 -16.65071 -16.22520 -16.13594 -15.75523 -14.84621 -14.68270 -14.46628 -14.24397 -13.86391 -13.68454 -13.55167 -13.16861 -13.04428 -12.65772 -12.58010 -12.20666 -12.09914 -11.83689 -11.77205 -11.67083 -11.22027 -11.13574 -11.07507 -10.92925 -10.70402 -10.37689 -10.33726 -10.16756 -9.87667 -9.75171 -9.61588 -9.56871 -9.17667 -8.60699 -8.25254 -6.73000 -5.55755 -2.97985 1.20179 1.94973 2.00295 3.45395 3.49348 3.50759 3.59732 3.77687 4.15008 4.34467 4.49068 4.55491 4.71873 4.87317 5.06441 5.08760 5.15945 5.20941 5.33775 5.39422 5.47578 5.60131 5.70243 5.72269 5.88896 5.93039 5.97736 6.12867 6.18111 6.27533 6.35300 6.38043 6.48704 6.57401 6.69386 6.78823 6.85416 7.07615 7.55464 7.69709 7.91484 7.98056 8.20204 8.46826 8.73427 9.29743 9.91418 10.55838 11.47086 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.011582 B = 0.004790 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.918621 B = 5843.835082 C = 7391.618738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.120 3.880 3 N -0.365 5.365 4 C 0.088 3.912 5 C -0.089 4.089 6 C 0.602 3.398 7 O -0.545 6.545 8 N -0.684 5.684 9 C 0.123 3.877 10 H 0.088 0.912 11 C 0.147 3.853 12 N -0.601 5.601 13 C -0.223 4.223 14 H 0.076 0.924 15 C -0.009 4.009 16 N -0.918 5.918 17 Si 0.911 3.089 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C 0.143 3.857 22 C -0.087 4.087 23 C -0.128 4.128 24 C -0.132 4.132 25 N -0.202 5.202 26 N -0.070 5.070 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.203 0.797 33 H 0.404 0.596 34 H 0.113 0.887 35 H 0.021 0.979 36 H 0.252 0.748 37 H 0.023 0.977 38 H 0.024 0.976 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.493 -14.556 -9.342 17.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.001 4.001 3 N -0.152 5.152 4 C -0.069 4.069 5 C -0.229 4.229 6 C 0.385 3.615 7 O -0.422 6.422 8 N -0.332 5.332 9 C 0.018 3.982 10 H 0.106 0.894 11 C 0.021 3.979 12 N -0.327 5.327 13 C -0.351 4.351 14 H 0.094 0.906 15 C -0.205 4.205 16 N -0.567 5.567 17 Si 0.742 3.258 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.213 1.213 21 C 0.017 3.983 22 C -0.088 4.088 23 C -0.185 4.185 24 C -0.190 4.190 25 N -0.076 5.076 26 N -0.050 5.050 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.122 0.878 32 H 0.220 0.780 33 H 0.240 0.760 34 H 0.131 0.869 35 H 0.039 0.961 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.042 0.958 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.970 -14.463 -9.697 17.664 hybrid contribution -0.663 0.190 0.892 1.128 sum 2.307 -14.273 -8.804 16.928 Atomic orbital electron populations 1.22091 0.92859 1.03480 1.04226 1.21976 0.96817 0.76468 1.04850 1.50565 1.32106 1.12175 1.20321 1.23356 0.93476 0.94233 0.95814 1.21649 1.07395 0.95014 0.98822 1.16651 0.80315 0.81462 0.83065 1.90781 1.46539 1.79673 1.25197 1.45589 1.47438 1.09271 1.30949 1.22580 0.93650 0.87647 0.94314 0.89390 1.22310 0.94195 0.90963 0.90428 1.44438 1.25758 1.44381 1.18083 1.18995 0.98249 1.15979 1.01870 0.90629 1.24766 0.99197 0.99357 0.97159 1.69791 1.39999 1.33353 1.13528 0.86202 0.83189 0.78643 0.77750 1.21292 1.21679 1.21268 1.21433 0.90879 0.95699 0.90338 1.21853 0.96321 0.95816 0.94810 1.21683 0.95617 0.99462 1.01767 1.21726 1.01328 1.00447 0.95461 1.74646 1.04601 1.17796 1.10566 1.81919 1.20655 0.90321 1.12131 0.91559 0.90724 0.90060 0.88563 0.87817 0.78000 0.75962 0.86948 0.96085 0.93750 0.95957 0.95844 0.93073 0.92718 0.91742 0.92650 0.92746 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 10.12 37.16 0.38 -0.70 16 2 C 0.12 0.76 7.26 -4.04 -0.03 0.73 16 3 N -0.37 -4.20 3.69 -61.06 -0.23 -4.42 16 4 C 0.09 1.12 11.27 -16.84 -0.19 0.93 16 5 C -0.09 -1.49 6.99 -83.55 -0.58 -2.08 16 6 C 0.60 11.67 7.82 -12.48 -0.10 11.57 16 7 O -0.54 -11.71 16.56 5.28 0.09 -11.62 16 8 N -0.68 -13.17 4.62 -52.77 -0.24 -13.42 16 9 C 0.12 2.47 2.61 -65.78 -0.17 2.30 16 10 H 0.09 1.75 7.53 -51.93 -0.39 1.36 16 11 C 0.15 3.68 5.27 -2.53 -0.01 3.66 16 12 N -0.60 -15.45 3.39 -170.01 -0.58 -16.03 16 13 C -0.22 -6.30 10.27 -15.06 -0.15 -6.46 16 14 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 15 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 16 N -0.92 -27.63 10.09 55.49 0.56 -27.07 16 17 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 C 0.14 2.97 6.41 -3.01 -0.02 2.95 16 22 C -0.09 -1.51 0.81 -152.62 -0.12 -1.63 16 23 C -0.13 -1.98 8.41 37.16 0.31 -1.67 16 24 C -0.13 -1.89 8.08 37.16 0.30 -1.59 16 25 N -0.20 -3.46 12.04 32.85 0.40 -3.06 16 26 N -0.07 -1.05 13.65 60.35 0.82 -0.23 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.20 1.95 8.06 -52.49 -0.42 1.52 16 33 H 0.40 7.57 6.71 -40.82 -0.27 7.29 16 34 H 0.11 3.28 5.87 -51.93 -0.31 2.97 16 35 H 0.02 0.57 7.80 -51.93 -0.41 0.16 16 36 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.02 0.47 7.77 -51.93 -0.40 0.06 16 38 H 0.02 0.49 7.85 -51.93 -0.41 0.08 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 1.12 7.57 -51.93 -0.39 0.73 16 42 H 0.05 0.81 6.42 -51.93 -0.33 0.47 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -34.59 360.65 -5.94 -40.53 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.68 Total: 4.53 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.49 Total: 7.67 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: 0.73 Total: -64.23 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.59 -5.94 -40.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977414210.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.983 kcal (2) G-P(sol) polarization free energy of solvation -34.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds