Wall clock time and date at job start Fri Apr 10 2020 17:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47061 * 2 1 4 4 C 1.34807 * 126.59524 * 124.70823 * 3 2 1 5 5 C 1.36596 * 106.84342 * 180.26460 * 4 3 2 6 6 C 1.47517 * 125.77412 * 180.02562 * 5 4 3 7 7 O 1.21595 * 120.00238 * 359.96866 * 6 5 4 8 8 N 1.34774 * 119.99996 * 179.97438 * 6 5 4 9 9 C 1.46507 * 120.00138 * 180.02562 * 8 6 5 10 10 H 1.08993 * 110.88385 * 34.29125 * 9 8 6 11 11 C 1.54913 * 111.00103 * 270.41282 * 9 8 6 12 12 N 1.47425 * 104.83148 * 278.93390 * 11 9 8 13 13 C 1.36936 * 125.64752 * 155.83767 * 12 11 9 14 14 H 1.07995 * 120.00512 * 180.02562 * 13 12 11 15 15 C 1.38824 * 119.99954 * 0.02562 * 13 12 11 16 16 N 1.31614 * 119.99959 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99714 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47659 * 60.00377 * 17 15 13 19 19 H 1.48504 * 109.46839 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47161 * 299.99875 * 17 15 13 21 21 C 1.47016 * 108.70348 * 335.87202 * 12 11 9 22 22 C 1.54425 * 107.28374 * 1.06027 * 21 12 11 23 23 C 1.52997 * 110.72641 * 263.84752 * 22 21 12 24 24 C 1.52998 * 110.76188 * 140.54181 * 22 21 12 25 25 N 1.34405 * 108.45326 * 0.02562 * 5 4 3 26 26 N 1.28755 * 109.52720 * 359.97438 * 25 5 4 27 27 H 1.08999 * 109.47384 * 299.99870 * 1 2 3 28 28 H 1.08998 * 109.46963 * 60.00214 * 1 2 3 29 29 H 1.09001 * 109.47239 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47384 * 240.00130 * 2 1 3 31 31 H 1.08997 * 109.47408 * 120.00081 * 2 1 3 32 32 H 1.08000 * 126.58225 * 0.25142 * 4 3 2 33 33 H 0.97002 * 120.00266 * 359.97438 * 8 6 5 34 34 H 1.09004 * 110.36700 * 37.77487 * 11 9 8 35 35 H 1.08999 * 110.36831 * 160.09578 * 11 9 8 36 36 H 0.96995 * 120.00243 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.88291 * 120.47597 * 21 12 11 38 38 H 1.08994 * 109.88089 * 241.48655 * 21 12 11 39 39 H 1.09001 * 109.47005 * 173.46118 * 23 22 21 40 40 H 1.09000 * 109.47362 * 293.46681 * 23 22 21 41 41 H 1.09001 * 109.46988 * 53.46915 * 23 22 21 42 42 H 1.09000 * 109.47297 * 306.51153 * 24 22 21 43 43 H 1.09003 * 109.47421 * 66.51441 * 24 22 21 44 44 H 1.09003 * 109.47558 * 186.51699 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8672 1.9336 0.8897 5 6 3.0432 3.2349 0.5137 6 6 3.8955 4.2234 1.2011 7 8 4.5175 3.9030 2.1956 8 7 3.9848 5.4818 0.7269 9 6 4.8317 6.4635 1.4092 10 1 5.7170 5.9870 1.8300 11 6 4.0354 7.2194 2.5020 12 7 3.2906 8.2622 1.7731 13 6 2.1346 8.8613 2.1972 14 1 1.6633 9.6178 1.5874 15 6 1.5685 8.4962 3.4110 16 7 2.1431 7.5745 4.1544 17 14 -0.0088 9.3130 3.9891 18 1 -1.0876 9.0618 3.0002 19 1 -0.4031 8.7512 5.3060 20 1 0.2109 10.7757 4.1212 21 6 3.9941 8.5516 0.5150 22 6 5.2242 7.6201 0.4523 23 6 6.4753 8.3405 0.9586 24 6 5.4368 7.0975 -0.9698 25 7 2.3085 3.4623 -0.5885 26 7 1.6875 2.3848 -0.9217 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.3209 1.4416 1.7374 33 1 3.4889 5.7375 -0.0666 34 1 3.3455 6.5422 3.0055 35 1 4.7164 7.6730 3.2222 36 1 1.7474 7.3191 5.0023 37 1 3.3363 8.3543 -0.3314 38 1 4.3142 9.5934 0.5006 39 1 7.3035 7.6340 1.0153 40 1 6.7325 9.1476 0.2726 41 1 6.2814 8.7531 1.9487 42 1 4.5156 6.6396 -1.3303 43 1 5.7112 7.9252 -1.6239 44 1 6.2351 6.3552 -0.9687 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977414210.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:35 Heat of formation + Delta-G solvation = 61.440901 kcal Electronic energy + Delta-G solvation = -26133.677576 eV Core-core repulsion = 22509.089203 eV Total energy + Delta-G solvation = -3624.588373 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.20544 -41.02599 -39.26483 -36.35442 -35.64959 -34.45940 -32.59141 -32.33508 -31.38258 -29.68419 -28.01919 -27.40254 -25.64618 -25.40905 -24.16680 -22.70575 -22.16825 -21.15611 -20.18633 -18.91394 -18.68922 -17.48897 -17.23389 -17.12693 -16.58165 -15.91130 -15.70000 -15.59715 -15.48847 -15.19809 -14.89957 -14.63162 -14.17466 -13.78031 -13.69104 -13.63601 -13.37177 -13.06896 -13.02342 -12.99028 -12.82711 -12.60777 -12.57652 -12.53633 -12.15154 -12.04684 -11.77695 -11.75411 -11.43750 -11.34114 -11.30293 -11.13499 -10.73984 -10.36604 -9.89344 -8.82407 -7.74022 -5.18574 0.17067 0.65515 1.15155 1.43473 1.47073 1.53130 2.17178 2.36714 2.49605 3.22091 3.34868 3.43416 3.58861 3.71448 3.85527 3.98582 3.99956 4.00519 4.10044 4.28983 4.34312 4.43461 4.54372 4.61559 4.73903 4.78789 4.86645 4.89276 4.93735 4.94298 5.06011 5.13758 5.22535 5.22581 5.31540 5.34822 5.48795 5.51255 5.55528 5.70262 5.85522 6.33623 6.52502 6.93296 7.11616 7.23061 7.80987 8.44872 9.26469 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.011582 B = 0.004790 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.918621 B = 5843.835082 C = 7391.618738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.107 3.893 3 N -0.348 5.348 4 C 0.108 3.892 5 C -0.124 4.124 6 C 0.599 3.401 7 O -0.573 6.573 8 N -0.683 5.683 9 C 0.135 3.865 10 H 0.090 0.910 11 C 0.155 3.845 12 N -0.618 5.618 13 C -0.236 4.236 14 H 0.081 0.919 15 C -0.066 4.066 16 N -0.947 5.947 17 Si 0.976 3.024 18 H -0.280 1.280 19 H -0.296 1.296 20 H -0.276 1.276 21 C 0.137 3.863 22 C -0.073 4.073 23 C -0.124 4.124 24 C -0.124 4.124 25 N -0.228 5.228 26 N -0.087 5.087 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.113 0.887 30 H 0.120 0.880 31 H 0.141 0.859 32 H 0.236 0.764 33 H 0.407 0.593 34 H 0.069 0.931 35 H -0.008 1.008 36 H 0.243 0.757 37 H 0.027 0.973 38 H 0.028 0.972 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.803 -15.983 -10.946 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.011 4.011 3 N -0.134 5.134 4 C -0.050 4.050 5 C -0.264 4.264 6 C 0.384 3.616 7 O -0.453 6.453 8 N -0.332 5.332 9 C 0.029 3.971 10 H 0.108 0.892 11 C 0.029 3.971 12 N -0.344 5.344 13 C -0.365 4.365 14 H 0.099 0.901 15 C -0.259 4.259 16 N -0.597 5.597 17 Si 0.805 3.195 18 H -0.206 1.206 19 H -0.222 1.222 20 H -0.202 1.202 21 C 0.013 3.987 22 C -0.074 4.074 23 C -0.182 4.182 24 C -0.182 4.182 25 N -0.102 5.102 26 N -0.067 5.067 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.131 0.869 30 H 0.138 0.862 31 H 0.159 0.841 32 H 0.253 0.747 33 H 0.243 0.757 34 H 0.087 0.913 35 H 0.010 0.990 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.267 -15.897 -11.368 19.815 hybrid contribution -0.806 0.531 1.382 1.686 sum 2.461 -15.366 -9.986 18.490 Atomic orbital electron populations 1.22095 0.92908 1.05003 1.02429 1.22596 0.96776 0.73879 1.07889 1.50950 1.30611 1.13198 1.18609 1.23804 0.92366 0.92924 0.95917 1.21474 1.08839 0.96072 0.99987 1.17042 0.80058 0.81787 0.82677 1.90747 1.47874 1.80235 1.26419 1.45561 1.47489 1.09294 1.30832 1.22307 0.92728 0.88273 0.93794 0.89196 1.21965 0.93147 0.90432 0.91571 1.44669 1.25599 1.44487 1.19670 1.19406 0.99160 1.15905 1.02025 0.90097 1.25596 1.02429 1.00294 0.97570 1.70094 1.41313 1.34845 1.13461 0.85182 0.79509 0.77997 0.76835 1.20588 1.22207 1.20177 1.21655 0.92074 0.96790 0.88226 1.21843 0.95552 0.93690 0.96345 1.21678 0.95256 1.00503 1.00750 1.21681 1.01731 1.01595 0.93181 1.74608 1.05317 1.19081 1.11156 1.81811 1.20855 0.90787 1.13277 0.93208 0.92626 0.86879 0.86218 0.84102 0.74732 0.75657 0.91297 0.98981 0.94688 0.95521 0.95392 0.90903 0.90212 0.94460 0.93147 0.90309 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 10.12 71.98 0.73 -1.01 16 2 C 0.11 0.99 7.26 86.38 0.63 1.62 16 3 N -0.35 -7.28 3.69 -347.10 -1.28 -8.56 16 4 C 0.11 2.59 11.27 83.85 0.95 3.53 16 5 C -0.12 -4.13 6.99 40.81 0.29 -3.85 16 6 C 0.60 23.67 7.82 86.69 0.68 24.35 16 7 O -0.57 -25.18 16.56 -4.02 -0.07 -25.24 16 8 N -0.68 -26.79 4.62 -439.12 -2.03 -28.82 16 9 C 0.13 5.48 2.61 46.38 0.12 5.61 16 10 H 0.09 3.63 7.53 -2.39 -0.02 3.61 16 11 C 0.16 8.15 5.27 86.86 0.46 8.61 16 12 N -0.62 -32.71 3.39 -691.79 -2.35 -35.06 16 13 C -0.24 -13.67 10.27 84.04 0.86 -12.81 16 14 H 0.08 4.48 7.83 -2.91 -0.02 4.45 16 15 C -0.07 -3.93 5.49 84.87 0.47 -3.46 16 16 N -0.95 -59.56 10.09 21.65 0.22 -59.34 16 17 Si 0.98 47.69 29.55 68.60 2.03 49.72 16 18 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 19 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 21 C 0.14 5.70 6.41 86.77 0.56 6.26 16 22 C -0.07 -2.46 0.81 -50.96 -0.04 -2.50 16 23 C -0.12 -3.65 8.41 71.98 0.61 -3.04 16 24 C -0.12 -3.24 8.08 71.98 0.58 -2.66 16 25 N -0.23 -7.82 12.04 -50.00 -0.60 -8.42 16 26 N -0.09 -2.55 13.65 37.02 0.51 -2.05 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.11 0.47 8.14 -2.39 -0.02 0.46 16 30 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.14 0.35 8.08 -2.39 -0.02 0.33 16 32 H 0.24 3.87 8.06 -2.91 -0.02 3.85 16 33 H 0.41 15.44 6.71 -92.71 -0.62 14.82 16 34 H 0.07 4.26 5.87 -2.38 -0.01 4.25 16 35 H -0.01 -0.43 7.80 -2.39 -0.02 -0.45 16 36 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 37 H 0.03 1.09 7.77 -2.39 -0.02 1.07 16 38 H 0.03 1.14 7.85 -2.39 -0.02 1.13 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.04 1.29 7.57 -2.39 -0.02 1.27 16 42 H 0.05 1.38 6.42 -2.39 -0.02 1.36 16 43 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -79.89 360.65 3.68 -76.21 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.39 Total: 20.92 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 6.87 Total: 20.64 kcal Atomic # 7 Polarization: -136.71 SS G_CDS: -5.54 Total: -142.25 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.07 Total: -25.24 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -79.89 3.68 -76.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977414210.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.652 kcal (2) G-P(sol) polarization free energy of solvation -79.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds