Wall clock time and date at job start Fri Apr 10 2020 17:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36936 * 119.99480 * 2 1 4 4 H 1.08001 * 119.99829 * 160.02787 * 3 2 1 5 5 C 1.38804 * 120.00503 * 340.02992 * 3 2 1 6 6 N 1.31626 * 119.99998 * 346.20416 * 5 3 2 7 7 Si 1.86806 * 120.00389 * 166.48295 * 5 3 2 8 8 H 1.48498 * 109.47159 * 179.72406 * 7 5 3 9 9 H 1.48498 * 109.46784 * 299.72427 * 7 5 3 10 10 H 1.48492 * 109.46762 * 59.72473 * 7 5 3 11 11 C 1.46498 * 120.00274 * 180.02562 * 2 1 3 12 12 H 1.08992 * 110.64149 * 181.68640 * 11 2 1 13 13 C 1.55155 * 110.71712 * 58.54888 * 11 2 1 14 14 C 1.54914 * 101.57841 * 206.13516 * 13 11 2 15 15 N 1.47421 * 104.83176 * 37.01087 * 14 13 11 16 16 C 1.34783 * 125.64876 * 155.91220 * 15 14 13 17 17 O 1.21280 * 119.99732 * 175.08336 * 16 15 14 18 18 C 1.50701 * 119.99969 * 355.07850 * 16 15 14 19 19 C 1.54987 * 113.20263 * 178.40826 * 18 16 15 20 20 C 1.54056 * 104.76544 * 146.47542 * 19 18 16 21 21 N 1.48240 * 106.69813 * 1.00704 * 20 19 18 22 22 C 1.48807 * 105.17776 * 332.52012 * 21 20 19 23 23 C 1.47679 * 108.91012 * 88.17032 * 21 20 19 24 24 C 1.52986 * 109.28595 * 312.92025 * 23 21 20 25 25 C 1.54010 * 113.03236 * 56.47337 * 18 16 15 26 26 C 1.47023 * 108.70570 * 335.86797 * 15 14 13 27 27 H 1.09001 * 109.47198 * 84.80055 * 1 2 3 28 28 H 1.08996 * 109.47082 * 204.79292 * 1 2 3 29 29 H 1.08998 * 109.47533 * 324.79882 * 1 2 3 30 30 H 0.97003 * 119.99970 * 179.97438 * 6 5 3 31 31 H 1.09001 * 111.00468 * 324.20477 * 13 11 2 32 32 H 1.08999 * 111.00968 * 88.02349 * 13 11 2 33 33 H 1.09002 * 110.36602 * 155.84907 * 14 13 11 34 34 H 1.08994 * 110.36457 * 278.17018 * 14 13 11 35 35 H 1.09000 * 110.37867 * 265.29801 * 19 18 16 36 36 H 1.09008 * 110.37928 * 27.53814 * 19 18 16 37 37 H 1.08993 * 110.01414 * 120.31960 * 20 19 18 38 38 H 1.09006 * 110.01273 * 241.69867 * 20 19 18 39 39 H 1.08997 * 110.93240 * 284.56357 * 22 21 20 40 40 H 1.08995 * 110.93024 * 160.88842 * 22 21 20 41 41 H 1.09008 * 109.50295 * 72.86300 * 23 21 20 42 42 H 1.09000 * 109.50165 * 192.93161 * 23 21 20 43 43 H 1.09002 * 109.37022 * 64.97057 * 24 23 21 44 44 H 1.08999 * 109.36947 * 184.72411 * 24 23 21 45 45 H 1.09004 * 109.63114 * 291.84376 * 25 18 16 46 46 H 1.08994 * 109.63212 * 52.42674 * 25 18 16 47 47 H 1.08989 * 109.88497 * 241.64568 * 26 15 14 48 48 H 1.09003 * 109.88071 * 120.47577 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1809 1.2142 0.3195 5 6 1.5181 2.3519 -0.4105 6 7 0.3693 2.2882 -1.0497 7 14 2.3026 4.0112 -0.0628 8 1 1.4388 5.0905 -0.6052 9 1 2.4550 4.1890 1.4036 10 1 3.6374 4.0731 -0.7104 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0916 0.0295 13 6 1.8163 -2.1221 -1.2390 14 6 2.1010 -3.5564 -0.7277 15 7 1.6926 -3.5403 0.6887 16 6 1.3254 -4.6162 1.4127 17 8 1.0935 -4.4995 2.5974 18 6 1.2028 -5.9642 0.7501 19 6 0.8100 -7.0950 1.7344 20 6 -0.0601 -8.0557 0.9018 21 7 -0.1196 -7.4962 -0.4697 22 6 0.0605 -6.0288 -0.3000 23 6 1.0254 -8.0117 -1.2469 24 6 2.3031 -7.8725 -0.4171 25 6 2.4977 -6.4088 0.0448 26 6 1.7531 -2.1563 1.1811 27 1 -0.3634 0.0931 -1.0234 28 1 -0.3633 -0.9329 0.4309 29 1 -0.3634 0.8397 0.5924 30 1 -0.0722 3.1030 -1.3363 31 1 0.7626 -1.9985 -1.4892 32 1 2.4495 -1.8778 -2.0919 33 1 1.5088 -4.2823 -1.2850 34 1 3.1630 -3.7859 -0.8137 35 1 1.7004 -7.6079 2.0981 36 1 0.2386 -6.6898 2.5696 37 1 0.3932 -9.0466 0.8811 38 1 -1.0630 -8.1126 1.3253 39 1 -0.8486 -5.5668 0.0848 40 1 0.3660 -5.5631 -1.2369 41 1 0.8595 -9.0621 -1.4862 42 1 1.1259 -7.4399 -2.1695 43 1 2.2351 -8.5140 0.4616 44 1 3.1600 -8.1741 -1.0194 45 1 2.6832 -5.7688 -0.8179 46 1 3.3346 -6.3427 0.7399 47 1 2.4770 -2.0829 1.9926 48 1 0.7689 -1.8435 1.5300 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980276639.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:53 Heat of formation + Delta-G solvation = 13.883459 kcal Electronic energy + Delta-G solvation = -27147.342050 eV Core-core repulsion = 23624.231775 eV Total energy + Delta-G solvation = -3523.110275 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.50984 -39.21344 -37.36607 -34.87197 -32.68905 -32.16675 -31.49339 -29.85511 -29.57351 -27.70000 -26.08365 -25.04254 -24.13356 -23.07970 -22.39961 -21.19139 -20.03090 -19.23275 -18.82674 -17.14556 -17.06496 -16.35414 -15.94934 -15.56519 -15.10001 -14.82745 -14.34078 -13.90853 -13.62094 -13.49698 -13.26998 -13.14263 -13.04359 -12.89054 -12.56538 -12.40403 -12.32347 -12.02257 -11.70865 -11.59284 -11.47141 -11.22494 -11.13427 -10.98399 -10.87701 -10.74591 -10.61205 -10.55956 -10.45920 -10.28026 -9.92576 -9.87050 -9.60833 -8.73867 -8.59303 -8.34685 -6.87261 -5.77922 -3.22892 2.72295 3.12306 3.36559 3.42533 3.43553 3.75657 4.12345 4.37541 4.45035 4.60285 4.68554 4.78414 4.82479 4.85645 4.96571 5.12178 5.13305 5.22428 5.25030 5.33287 5.39132 5.46693 5.52163 5.55318 5.56724 5.62668 5.69394 5.77837 5.79073 5.82258 5.88758 5.96740 5.98256 6.03061 6.27357 6.35986 6.47797 6.54512 6.62320 6.66407 6.78253 6.84009 7.35743 7.66795 7.76207 7.76647 8.30225 8.34707 9.16788 9.79540 10.26876 11.26951 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.031907 B = 0.003250 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.351732 B = 8612.233635 C = 8733.092212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.587 5.587 3 C -0.261 4.261 4 H 0.070 0.930 5 C 0.004 3.996 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.290 1.290 9 H -0.284 1.284 10 H -0.283 1.283 11 C 0.174 3.826 12 H 0.078 0.922 13 C -0.152 4.152 14 C 0.095 3.905 15 N -0.607 5.607 16 C 0.547 3.453 17 O -0.544 6.544 18 C -0.114 4.114 19 C -0.129 4.129 20 C 0.030 3.970 21 N -0.493 5.493 22 C 0.045 3.955 23 C 0.032 3.968 24 C -0.154 4.154 25 C -0.112 4.112 26 C 0.087 3.913 27 H 0.031 0.969 28 H 0.001 0.999 29 H 0.045 0.955 30 H 0.254 0.746 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.060 0.940 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.618 -21.082 -1.263 21.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.307 5.307 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.216 1.216 9 H -0.210 1.210 10 H -0.209 1.209 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.193 4.193 14 C -0.028 4.028 15 N -0.340 5.340 16 C 0.334 3.666 17 O -0.421 6.421 18 C -0.118 4.118 19 C -0.168 4.168 20 C -0.099 4.099 21 N -0.214 5.214 22 C -0.084 4.084 23 C -0.096 4.096 24 C -0.193 4.193 25 C -0.149 4.149 26 C -0.038 4.038 27 H 0.050 0.950 28 H 0.019 0.981 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.790 -21.056 -0.965 21.154 hybrid contribution 1.254 1.187 0.525 1.805 sum 3.044 -19.869 -0.440 20.106 Atomic orbital electron populations 1.20808 0.82291 0.95650 0.99567 1.43884 1.01952 0.99866 1.85037 1.19197 0.96777 0.84812 1.38237 0.91171 1.24956 0.97616 0.98400 0.98462 1.70085 1.17724 1.26965 1.40295 0.86305 0.78379 0.83562 0.78099 1.21612 1.21036 1.20913 1.21276 0.96266 0.85950 0.90184 0.90380 1.23414 1.02966 0.92550 1.00340 1.22585 0.99228 0.99425 0.81550 1.48415 1.65579 1.07631 1.12374 1.19548 0.76706 0.84173 0.86132 1.90677 1.50869 1.85361 1.15233 1.22510 0.98691 0.93226 0.97401 1.22795 1.00567 0.94818 0.98580 1.23111 1.00404 0.97947 0.88417 1.66429 1.38516 1.04327 1.12104 1.23596 0.96927 0.90104 0.97752 1.22613 0.88627 1.01318 0.97084 1.22508 0.99239 0.96658 1.00909 1.22247 0.95713 0.96541 1.00442 1.22771 1.02367 0.79639 0.98986 0.95040 0.98094 0.93611 0.93618 0.90527 0.90368 0.91088 0.91656 0.90909 0.89728 0.90823 0.89972 0.89386 0.89312 0.90254 0.90427 0.91146 0.91111 0.90381 0.91200 0.92151 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.89 7.66 59.85 0.46 4.34 16 2 N -0.59 -14.12 2.94 -171.40 -0.50 -14.63 16 3 C -0.26 -6.94 9.65 -15.06 -0.15 -7.09 16 4 H 0.07 1.81 7.82 -52.49 -0.41 1.40 16 5 C 0.00 0.11 5.09 -17.43 -0.09 0.02 16 6 N -0.91 -25.78 10.58 55.49 0.59 -25.19 16 7 Si 0.91 21.46 29.58 -169.99 -5.03 16.43 16 8 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 C 0.17 3.35 3.45 -66.10 -0.23 3.12 16 12 H 0.08 1.49 7.91 -51.93 -0.41 1.08 16 13 C -0.15 -2.45 6.65 -24.58 -0.16 -2.62 16 14 C 0.10 1.23 5.09 -2.53 -0.01 1.21 16 15 N -0.61 -9.47 3.33 -170.52 -0.57 -10.04 16 16 C 0.55 8.67 6.97 -10.98 -0.08 8.59 16 17 O -0.54 -10.66 16.12 5.56 0.09 -10.57 16 18 C -0.11 -1.33 0.68 -152.87 -0.10 -1.44 16 19 C -0.13 -1.41 5.29 -25.13 -0.13 -1.54 16 20 C 0.03 0.27 6.20 -2.53 -0.02 0.26 16 21 N -0.49 -4.90 6.07 -228.98 -1.39 -6.29 16 22 C 0.04 0.50 5.50 -1.55 -0.01 0.49 16 23 C 0.03 0.25 5.86 -3.40 -0.02 0.23 16 24 C -0.15 -1.17 5.53 -25.84 -0.14 -1.32 16 25 C -0.11 -1.06 4.66 -25.30 -0.12 -1.18 16 26 C 0.09 1.59 6.40 -3.06 -0.02 1.57 16 27 H 0.03 0.81 7.41 -51.93 -0.38 0.43 16 28 H 0.00 0.01 6.27 -51.93 -0.33 -0.31 16 29 H 0.05 1.20 7.16 -51.93 -0.37 0.83 16 30 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 31 H 0.08 1.35 7.28 -51.93 -0.38 0.98 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 0.78 4.47 -51.93 -0.23 0.55 16 34 H 0.07 0.74 7.66 -51.93 -0.40 0.35 16 35 H 0.07 0.74 6.93 -51.93 -0.36 0.38 16 36 H 0.08 1.10 7.26 -51.92 -0.38 0.72 16 37 H 0.07 0.57 6.93 -51.93 -0.36 0.21 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.09 0.91 5.59 -51.93 -0.29 0.62 16 41 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 42 H 0.08 0.59 7.87 -51.93 -0.41 0.18 16 43 H 0.07 0.54 5.37 -51.93 -0.28 0.26 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.70 5.21 -51.93 -0.27 0.43 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.06 1.13 8.14 -51.94 -0.42 0.71 16 48 H 0.07 1.51 6.11 -51.93 -0.32 1.19 16 LS Contribution 347.14 15.07 5.23 5.23 Total: -1.00 -30.41 347.14 -10.06 -40.48 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.67 Total: -0.10 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -0.82 Total: 4.66 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -1.87 Total: -56.14 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.41 -10.06 -40.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980276639.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.359 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds