Wall clock time and date at job start Fri Apr 10 2020 17:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36936 * 119.99480 * 2 1 4 4 H 1.08001 * 119.99829 * 160.02787 * 3 2 1 5 5 C 1.38804 * 120.00503 * 340.02992 * 3 2 1 6 6 N 1.31626 * 119.99998 * 346.20416 * 5 3 2 7 7 Si 1.86806 * 120.00389 * 166.48295 * 5 3 2 8 8 H 1.48498 * 109.47159 * 179.72406 * 7 5 3 9 9 H 1.48498 * 109.46784 * 299.72427 * 7 5 3 10 10 H 1.48492 * 109.46762 * 59.72473 * 7 5 3 11 11 C 1.46498 * 120.00274 * 180.02562 * 2 1 3 12 12 H 1.08992 * 110.64149 * 181.68640 * 11 2 1 13 13 C 1.55155 * 110.71712 * 58.54888 * 11 2 1 14 14 C 1.54914 * 101.57841 * 206.13516 * 13 11 2 15 15 N 1.47421 * 104.83176 * 37.01087 * 14 13 11 16 16 C 1.34783 * 125.64876 * 155.91220 * 15 14 13 17 17 O 1.21280 * 119.99732 * 175.08336 * 16 15 14 18 18 C 1.50701 * 119.99969 * 355.07850 * 16 15 14 19 19 C 1.54987 * 113.20263 * 178.40826 * 18 16 15 20 20 C 1.54056 * 104.76544 * 146.47542 * 19 18 16 21 21 N 1.48240 * 106.69813 * 1.00704 * 20 19 18 22 22 C 1.48807 * 105.17776 * 332.52012 * 21 20 19 23 23 C 1.47679 * 108.91012 * 88.17032 * 21 20 19 24 24 C 1.52986 * 109.28595 * 312.92025 * 23 21 20 25 25 C 1.54010 * 113.03236 * 56.47337 * 18 16 15 26 26 C 1.47023 * 108.70570 * 335.86797 * 15 14 13 27 27 H 1.09001 * 109.47198 * 84.80055 * 1 2 3 28 28 H 1.08996 * 109.47082 * 204.79292 * 1 2 3 29 29 H 1.08998 * 109.47533 * 324.79882 * 1 2 3 30 30 H 0.97003 * 119.99970 * 179.97438 * 6 5 3 31 31 H 1.09001 * 111.00468 * 324.20477 * 13 11 2 32 32 H 1.08999 * 111.00968 * 88.02349 * 13 11 2 33 33 H 1.09002 * 110.36602 * 155.84907 * 14 13 11 34 34 H 1.08994 * 110.36457 * 278.17018 * 14 13 11 35 35 H 1.09000 * 110.37867 * 265.29801 * 19 18 16 36 36 H 1.09008 * 110.37928 * 27.53814 * 19 18 16 37 37 H 1.08993 * 110.01414 * 120.31960 * 20 19 18 38 38 H 1.09006 * 110.01273 * 241.69867 * 20 19 18 39 39 H 1.08997 * 110.93240 * 284.56357 * 22 21 20 40 40 H 1.08995 * 110.93024 * 160.88842 * 22 21 20 41 41 H 1.09008 * 109.50295 * 72.86300 * 23 21 20 42 42 H 1.09000 * 109.50165 * 192.93161 * 23 21 20 43 43 H 1.09002 * 109.37022 * 64.97057 * 24 23 21 44 44 H 1.08999 * 109.36947 * 184.72411 * 24 23 21 45 45 H 1.09004 * 109.63114 * 291.84376 * 25 18 16 46 46 H 1.08994 * 109.63212 * 52.42674 * 25 18 16 47 47 H 1.08989 * 109.88497 * 241.64568 * 26 15 14 48 48 H 1.09003 * 109.88071 * 120.47577 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1809 1.2142 0.3195 5 6 1.5181 2.3519 -0.4105 6 7 0.3693 2.2882 -1.0497 7 14 2.3026 4.0112 -0.0628 8 1 1.4388 5.0905 -0.6052 9 1 2.4550 4.1890 1.4036 10 1 3.6374 4.0731 -0.7104 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0916 0.0295 13 6 1.8163 -2.1221 -1.2390 14 6 2.1010 -3.5564 -0.7277 15 7 1.6926 -3.5403 0.6887 16 6 1.3254 -4.6162 1.4127 17 8 1.0935 -4.4995 2.5974 18 6 1.2028 -5.9642 0.7501 19 6 0.8100 -7.0950 1.7344 20 6 -0.0601 -8.0557 0.9018 21 7 -0.1196 -7.4962 -0.4697 22 6 0.0605 -6.0288 -0.3000 23 6 1.0254 -8.0117 -1.2469 24 6 2.3031 -7.8725 -0.4171 25 6 2.4977 -6.4088 0.0448 26 6 1.7531 -2.1563 1.1811 27 1 -0.3634 0.0931 -1.0234 28 1 -0.3633 -0.9329 0.4309 29 1 -0.3634 0.8397 0.5924 30 1 -0.0722 3.1030 -1.3363 31 1 0.7626 -1.9985 -1.4892 32 1 2.4495 -1.8778 -2.0919 33 1 1.5088 -4.2823 -1.2850 34 1 3.1630 -3.7859 -0.8137 35 1 1.7004 -7.6079 2.0981 36 1 0.2386 -6.6898 2.5696 37 1 0.3932 -9.0466 0.8811 38 1 -1.0630 -8.1126 1.3253 39 1 -0.8486 -5.5668 0.0848 40 1 0.3660 -5.5631 -1.2369 41 1 0.8595 -9.0621 -1.4862 42 1 1.1259 -7.4399 -2.1695 43 1 2.2351 -8.5140 0.4616 44 1 3.1600 -8.1741 -1.0194 45 1 2.6832 -5.7688 -0.8179 46 1 3.3346 -6.3427 0.7399 47 1 2.4770 -2.0829 1.9926 48 1 0.7689 -1.8435 1.5300 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980276639.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:52 Heat of formation + Delta-G solvation = -6.802276 kcal Electronic energy + Delta-G solvation = -27148.239051 eV Core-core repulsion = 23624.231775 eV Total energy + Delta-G solvation = -3524.007276 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.42748 -40.44392 -38.82601 -36.61292 -33.82732 -33.04751 -32.84838 -31.32789 -30.53547 -29.11399 -28.10017 -26.00859 -25.33992 -24.21444 -23.74981 -22.17345 -20.88502 -20.77246 -19.94037 -18.96115 -18.19475 -17.53401 -17.11278 -16.80046 -16.49210 -15.98096 -15.72980 -15.21722 -15.05294 -14.79884 -14.43443 -14.31710 -14.23342 -13.90113 -13.72732 -13.56545 -13.44860 -13.30225 -13.00727 -12.84869 -12.65007 -12.55360 -12.40552 -12.38476 -12.26002 -12.09597 -12.05641 -11.92442 -11.83274 -11.55961 -11.49825 -11.34338 -10.81401 -10.63234 -9.69962 -9.49638 -8.85703 -7.84420 -5.30841 1.47276 1.48684 1.50497 1.56250 1.87923 2.50911 2.97066 3.23439 3.29223 3.48394 3.55234 3.74219 3.80937 3.85388 4.00041 4.11020 4.13859 4.17038 4.23145 4.25458 4.35436 4.39846 4.44335 4.55199 4.58869 4.67890 4.70642 4.82363 4.85221 4.91024 4.92297 4.96474 5.01257 5.05959 5.11478 5.15888 5.19668 5.25105 5.30864 5.34337 5.37494 5.61723 5.68824 5.74732 5.98818 6.28742 6.50572 7.05454 7.12326 7.82774 8.26521 9.19239 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.031907 B = 0.003250 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.351732 B = 8612.233635 C = 8733.092212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.603 5.603 3 C -0.268 4.268 4 H 0.076 0.924 5 C -0.050 4.050 6 N -0.936 5.936 7 Si 0.969 3.031 8 H -0.296 1.296 9 H -0.283 1.283 10 H -0.272 1.272 11 C 0.167 3.833 12 H 0.084 0.916 13 C -0.143 4.143 14 C 0.105 3.895 15 N -0.607 5.607 16 C 0.542 3.458 17 O -0.590 6.590 18 C -0.111 4.111 19 C -0.127 4.127 20 C 0.035 3.965 21 N -0.500 5.500 22 C 0.048 3.952 23 C 0.030 3.970 24 C -0.147 4.147 25 C -0.109 4.109 26 C 0.098 3.902 27 H 0.011 0.989 28 H 0.019 0.981 29 H 0.014 0.986 30 H 0.248 0.752 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.065 0.935 47 H 0.053 0.947 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.405 -23.495 -2.705 24.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.324 5.324 3 C -0.398 4.398 4 H 0.094 0.906 5 C -0.245 4.245 6 N -0.583 5.583 7 Si 0.797 3.203 8 H -0.222 1.222 9 H -0.209 1.209 10 H -0.197 1.197 11 C 0.059 3.941 12 H 0.102 0.898 13 C -0.183 4.183 14 C -0.017 4.017 15 N -0.339 5.339 16 C 0.331 3.669 17 O -0.470 6.470 18 C -0.116 4.116 19 C -0.166 4.166 20 C -0.093 4.093 21 N -0.221 5.221 22 C -0.081 4.081 23 C -0.098 4.098 24 C -0.185 4.185 25 C -0.147 4.147 26 C -0.028 4.028 27 H 0.029 0.971 28 H 0.037 0.963 29 H 0.032 0.968 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.611 -23.518 -2.429 23.917 hybrid contribution 0.699 1.877 1.033 2.254 sum 4.310 -21.641 -1.396 22.110 Atomic orbital electron populations 1.20437 0.82909 0.95136 0.97708 1.44035 1.01889 1.01082 1.85429 1.19564 0.97086 0.85975 1.37177 0.90603 1.25696 0.98330 1.01564 0.98898 1.70241 1.19109 1.27210 1.41725 0.85320 0.77777 0.79484 0.77724 1.22193 1.20930 1.19732 1.21456 0.96048 0.84630 0.91993 0.89821 1.23247 1.02078 0.93858 0.99089 1.22726 1.01430 0.97831 0.79699 1.48470 1.65513 1.06405 1.13507 1.20365 0.75332 0.85448 0.85716 1.90653 1.52703 1.86216 1.17474 1.22505 1.00657 0.90660 0.97735 1.22791 1.00920 0.94998 0.97901 1.23098 1.00015 0.98409 0.87810 1.66417 1.39966 1.03285 1.12418 1.23533 0.95630 0.91248 0.97691 1.22736 0.87786 1.02294 0.96981 1.22468 0.99900 0.94943 1.01215 1.22283 0.93801 0.98243 1.00329 1.22396 1.00451 0.81469 0.98443 0.97122 0.96262 0.96751 0.94261 0.92282 0.89100 0.88359 0.88759 0.89913 0.92586 0.88541 0.90430 0.91547 0.88151 0.88692 0.89607 0.91001 0.89015 0.89342 0.91653 0.92904 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.14 7.66 127.77 0.98 10.12 16 2 N -0.60 -29.45 2.94 -696.18 -2.05 -31.50 16 3 C -0.27 -14.38 9.65 84.03 0.81 -13.57 16 4 H 0.08 3.89 7.82 -2.91 -0.02 3.87 16 5 C -0.05 -2.74 5.09 84.86 0.43 -2.30 16 6 N -0.94 -54.64 10.58 21.65 0.23 -54.41 16 7 Si 0.97 44.53 29.58 68.60 2.03 46.56 16 8 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 9 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 C 0.17 6.38 3.45 46.18 0.16 6.54 16 12 H 0.08 3.09 7.91 -2.39 -0.02 3.07 16 13 C -0.14 -4.36 6.65 31.99 0.21 -4.15 16 14 C 0.10 2.40 5.09 86.86 0.44 2.84 16 15 N -0.61 -18.35 3.33 -811.80 -2.70 -21.05 16 16 C 0.54 16.97 6.97 87.66 0.61 17.58 16 17 O -0.59 -23.77 16.12 -3.03 -0.05 -23.82 16 18 C -0.11 -2.42 0.68 -51.12 -0.03 -2.45 16 19 C -0.13 -2.64 5.29 31.63 0.17 -2.48 16 20 C 0.03 0.57 6.20 86.40 0.54 1.11 16 21 N -0.50 -8.55 6.07 -878.37 -5.33 -13.88 16 22 C 0.05 0.97 5.50 86.72 0.48 1.45 16 23 C 0.03 0.35 5.86 86.15 0.50 0.85 16 24 C -0.15 -1.59 5.53 31.17 0.17 -1.42 16 25 C -0.11 -1.70 4.66 31.52 0.15 -1.55 16 26 C 0.10 3.62 6.40 86.73 0.55 4.17 16 27 H 0.01 0.57 7.41 -2.39 -0.02 0.55 16 28 H 0.02 0.86 6.27 -2.39 -0.01 0.85 16 29 H 0.01 0.77 7.16 -2.39 -0.02 0.75 16 30 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 31 H 0.06 2.04 7.28 -2.39 -0.02 2.02 16 32 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.10 1.78 4.47 -2.39 -0.01 1.77 16 34 H 0.09 1.72 7.66 -2.39 -0.02 1.70 16 35 H 0.08 1.53 6.93 -2.39 -0.02 1.51 16 36 H 0.06 1.49 7.26 -2.38 -0.02 1.47 16 37 H 0.10 1.15 6.93 -2.39 -0.02 1.14 16 38 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.10 1.75 5.59 -2.39 -0.01 1.74 16 41 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.09 0.90 7.87 -2.39 -0.02 0.88 16 43 H 0.07 0.79 5.37 -2.39 -0.01 0.78 16 44 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.09 1.19 5.21 -2.39 -0.01 1.17 16 46 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.05 1.94 6.11 -2.39 -0.01 1.92 16 Total: -1.00 -68.29 347.14 -0.74 -69.03 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.95 Total: 12.32 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 6.17 Total: 16.74 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -9.85 Total: -120.84 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.05 Total: -23.82 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -68.29 -0.74 -69.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980276639.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.231 kcal (2) G-P(sol) polarization free energy of solvation -68.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds