Wall clock time and date at job start Fri Apr 10 2020 17:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36945 * 119.99749 * 2 1 4 4 H 1.07997 * 119.99325 * 204.06468 * 3 2 1 5 5 C 1.38807 * 120.00088 * 24.05775 * 3 2 1 6 6 N 1.31618 * 120.00202 * 10.88917 * 5 3 2 7 7 Si 1.86804 * 119.99917 * 190.88710 * 5 3 2 8 8 H 1.48497 * 109.46850 * 90.00158 * 7 5 3 9 9 H 1.48496 * 109.46971 * 210.00330 * 7 5 3 10 10 H 1.48501 * 109.46894 * 330.00473 * 7 5 3 11 11 C 1.46499 * 120.00140 * 180.27467 * 2 1 3 12 12 H 1.09000 * 110.64187 * 182.86848 * 11 2 1 13 13 C 1.55158 * 110.71873 * 306.20117 * 11 2 1 14 14 C 1.54909 * 101.58247 * 153.86261 * 13 11 2 15 15 N 1.47423 * 104.83105 * 322.99381 * 14 13 11 16 16 C 1.34783 * 125.64675 * 204.08997 * 15 14 13 17 17 O 1.21282 * 120.00115 * 180.02562 * 16 15 14 18 18 C 1.50698 * 120.00006 * 0.04222 * 16 15 14 19 19 C 1.54999 * 113.20382 * 61.45098 * 18 16 15 20 20 C 1.54056 * 104.76038 * 146.47552 * 19 18 16 21 21 N 1.48237 * 106.70247 * 1.01366 * 20 19 18 22 22 C 1.48803 * 105.17475 * 332.51559 * 21 20 19 23 23 C 1.47670 * 108.91424 * 88.16973 * 21 20 19 24 24 C 1.52991 * 109.28535 * 312.91933 * 23 21 20 25 25 C 1.54012 * 113.03165 * 299.52128 * 18 16 15 26 26 C 1.47020 * 108.70662 * 24.12598 * 15 14 13 27 27 H 1.08997 * 109.47425 * 274.58876 * 1 2 3 28 28 H 1.09001 * 109.47284 * 34.59143 * 1 2 3 29 29 H 1.09000 * 109.47354 * 154.58410 * 1 2 3 30 30 H 0.96994 * 120.00226 * 179.97438 * 6 5 3 31 31 H 1.08996 * 111.00657 * 271.93967 * 13 11 2 32 32 H 1.09010 * 111.00348 * 35.79223 * 13 11 2 33 33 H 1.08999 * 110.36869 * 204.15074 * 14 13 11 34 34 H 1.09000 * 110.45707 * 81.87466 * 14 13 11 35 35 H 1.08998 * 110.37788 * 265.29992 * 19 18 16 36 36 H 1.09001 * 110.37387 * 27.65526 * 19 18 16 37 37 H 1.08997 * 110.00917 * 120.32627 * 20 19 18 38 38 H 1.09001 * 110.00990 * 241.69928 * 20 19 18 39 39 H 1.09002 * 110.93621 * 284.56284 * 22 21 20 40 40 H 1.09003 * 110.93618 * 160.89312 * 22 21 20 41 41 H 1.09004 * 109.50117 * 72.85850 * 23 21 20 42 42 H 1.08998 * 109.50680 * 192.97275 * 23 21 20 43 43 H 1.09004 * 109.37085 * 64.97343 * 24 23 21 44 44 H 1.09001 * 109.37025 * 184.71794 * 24 23 21 45 45 H 1.09000 * 109.63206 * 291.84093 * 25 18 16 46 46 H 1.09001 * 109.63726 * 52.42844 * 25 18 16 47 47 H 1.09003 * 109.88106 * 239.52278 * 26 15 14 48 48 H 1.08999 * 110.01451 * 118.42796 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1592 1.2266 -0.3814 5 6 1.5460 2.3359 0.4900 6 7 0.4086 2.2532 1.1472 7 14 2.3480 4.0008 0.2169 8 1 1.8560 4.5841 -1.0569 9 1 2.0034 4.9067 1.3420 10 1 3.8222 3.8348 0.1486 11 6 2.1975 -1.2687 -0.0061 12 1 3.2719 -1.0923 0.0458 13 6 1.7297 -2.1782 1.1606 14 6 2.0524 -3.5877 0.6049 15 7 1.7467 -3.5047 -0.8349 16 6 1.4338 -4.5451 -1.6327 17 8 1.2003 -4.3590 -2.8082 18 6 1.3739 -5.9393 -1.0641 19 6 0.3042 -6.1007 0.0460 20 6 -0.2110 -7.5439 -0.1122 21 7 0.5523 -8.1487 -1.2299 22 6 0.9348 -7.0063 -2.1034 23 6 1.7898 -8.7504 -0.6940 24 6 2.4693 -7.7544 0.2477 25 6 2.7158 -6.4057 -0.4693 26 6 1.8403 -2.0994 -1.2566 27 1 -0.3634 0.0822 1.0243 28 1 -0.3634 0.8460 -0.5834 29 1 -0.3634 -0.9282 -0.4410 30 1 -0.0130 3.0567 1.4899 31 1 2.3002 -1.9756 2.0670 32 1 0.6605 -2.0645 1.3402 33 1 1.4229 -4.3377 1.0838 34 1 3.1055 -3.8249 0.7559 35 1 0.7541 -5.9638 1.0293 36 1 -0.5079 -5.3892 -0.1033 37 1 -0.0361 -8.1051 0.8057 38 1 -1.2751 -7.5363 -0.3482 39 1 0.0808 -6.6566 -2.6834 40 1 1.7636 -7.2768 -2.7577 41 1 1.5444 -9.6601 -0.1459 42 1 2.4633 -8.9911 -1.5166 43 1 1.8305 -7.5822 1.1140 44 1 3.4242 -8.1631 0.5784 45 1 3.4446 -6.5381 -1.2690 46 1 3.0790 -5.6636 0.2417 47 1 0.8832 -1.7690 -1.6603 48 1 2.6191 -1.9874 -2.0109 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980276640.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:56 Heat of formation + Delta-G solvation = 11.249450 kcal Electronic energy + Delta-G solvation = -27104.348760 eV Core-core repulsion = 23581.124266 eV Total energy + Delta-G solvation = -3523.224494 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.50034 -39.21820 -37.33905 -34.87164 -32.76022 -32.26171 -31.38376 -29.79364 -29.42951 -27.91366 -26.07178 -25.07041 -24.14175 -22.87755 -22.47935 -21.16649 -20.15189 -19.25298 -18.89760 -17.06991 -16.88241 -16.31784 -16.07515 -15.66007 -15.06216 -14.70079 -14.19400 -14.09681 -13.66623 -13.55110 -13.34118 -13.12154 -13.00204 -12.91114 -12.57884 -12.39849 -12.24972 -11.92666 -11.90986 -11.70156 -11.41463 -11.19079 -11.00825 -10.94611 -10.92610 -10.79438 -10.68497 -10.59463 -10.49096 -10.26519 -9.91922 -9.90190 -9.54676 -8.77383 -8.61295 -8.34610 -6.83767 -5.79289 -3.28071 2.72723 3.14779 3.35134 3.41815 3.42495 3.72234 4.22667 4.37372 4.43595 4.52519 4.69797 4.74364 4.80113 4.81396 4.99195 5.12109 5.18300 5.22638 5.25968 5.29790 5.36515 5.49331 5.51021 5.53933 5.57025 5.61568 5.70951 5.73871 5.79090 5.83390 5.89936 5.94110 5.96395 5.99774 6.28476 6.35593 6.49283 6.53403 6.62795 6.68400 6.76449 6.83521 7.32931 7.66781 7.75028 7.76994 8.31085 8.35499 9.16049 9.77829 10.26872 11.25416 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.034283 B = 0.003173 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.546814 B = 8821.284944 C = 8873.323727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.586 5.586 3 C -0.262 4.262 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.905 5.905 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.174 3.826 12 H 0.078 0.922 13 C -0.150 4.150 14 C 0.094 3.906 15 N -0.606 5.606 16 C 0.547 3.453 17 O -0.544 6.544 18 C -0.113 4.113 19 C -0.138 4.138 20 C 0.031 3.969 21 N -0.496 5.496 22 C 0.058 3.942 23 C 0.032 3.968 24 C -0.154 4.154 25 C -0.111 4.111 26 C 0.086 3.914 27 H 0.033 0.967 28 H 0.043 0.957 29 H -0.001 1.001 30 H 0.253 0.747 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.671 -20.892 1.176 21.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.307 5.307 3 C -0.391 4.391 4 H 0.087 0.913 5 C -0.193 4.193 6 N -0.550 5.550 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.190 4.190 14 C -0.029 4.029 15 N -0.340 5.340 16 C 0.334 3.666 17 O -0.421 6.421 18 C -0.118 4.118 19 C -0.176 4.176 20 C -0.098 4.098 21 N -0.216 5.216 22 C -0.070 4.070 23 C -0.096 4.096 24 C -0.193 4.193 25 C -0.148 4.148 26 C -0.039 4.039 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.018 0.982 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.064 -21.136 0.276 21.239 hybrid contribution 0.898 1.701 0.505 1.989 sum 2.963 -19.435 0.782 19.675 Atomic orbital electron populations 1.20785 0.82451 0.95605 0.99456 1.43849 1.01854 0.99871 1.85079 1.19229 0.99053 0.85598 1.35248 0.91264 1.25055 0.97696 0.98678 0.97843 1.70056 1.18702 1.27513 1.38688 0.86215 0.78858 0.83865 0.77337 1.21401 1.21691 1.20416 1.21299 0.96386 0.86030 0.89977 0.90346 1.23364 1.02794 0.92778 1.00104 1.22570 0.99887 0.99571 0.80876 1.48449 1.67720 1.07668 1.10114 1.19577 0.76669 0.84755 0.85575 1.90691 1.50034 1.85222 1.16175 1.22555 0.97876 0.93492 0.97875 1.23014 0.97972 0.98548 0.98107 1.23085 0.99418 0.92701 0.94560 1.66443 1.16405 1.24682 1.14092 1.23352 1.01575 0.87612 0.94497 1.22607 0.91635 0.97194 0.98212 1.22517 1.01679 0.95561 0.99512 1.22191 0.95049 0.97192 1.00402 1.22822 1.02090 0.79167 0.99791 0.94914 0.93867 0.98217 0.93643 0.90371 0.90547 0.90932 0.91750 0.90123 0.90728 0.90686 0.89930 0.88942 0.89866 0.90316 0.90594 0.91043 0.91131 0.91275 0.90403 0.91050 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.89 7.45 59.85 0.45 4.34 16 2 N -0.59 -14.14 2.93 -171.39 -0.50 -14.65 16 3 C -0.26 -6.98 9.60 -15.06 -0.14 -7.13 16 4 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 5 C 0.01 0.17 5.14 -17.43 -0.09 0.08 16 6 N -0.91 -25.75 10.66 55.49 0.59 -25.15 16 7 Si 0.91 21.45 29.57 -169.99 -5.03 16.43 16 8 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 C 0.17 3.36 3.44 -66.10 -0.23 3.14 16 12 H 0.08 1.50 7.95 -51.93 -0.41 1.09 16 13 C -0.15 -2.43 6.62 -24.58 -0.16 -2.59 16 14 C 0.09 1.22 5.19 -2.53 -0.01 1.21 16 15 N -0.61 -9.50 3.33 -170.52 -0.57 -10.07 16 16 C 0.55 8.66 6.87 -10.98 -0.08 8.58 16 17 O -0.54 -10.65 16.50 5.56 0.09 -10.56 16 18 C -0.11 -1.32 0.69 -152.86 -0.11 -1.42 16 19 C -0.14 -1.38 4.26 -25.12 -0.11 -1.49 16 20 C 0.03 0.28 6.20 -2.53 -0.02 0.26 16 21 N -0.50 -4.93 6.06 -229.00 -1.39 -6.32 16 22 C 0.06 0.68 5.45 -1.56 -0.01 0.67 16 23 C 0.03 0.26 5.86 -3.41 -0.02 0.24 16 24 C -0.15 -1.15 5.53 -25.83 -0.14 -1.29 16 25 C -0.11 -1.05 5.01 -25.30 -0.13 -1.18 16 26 C 0.09 1.58 6.39 -3.06 -0.02 1.56 16 27 H 0.03 0.84 7.36 -51.93 -0.38 0.46 16 28 H 0.04 1.14 7.32 -51.93 -0.38 0.76 16 29 H 0.00 -0.01 6.58 -51.93 -0.34 -0.36 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.08 1.35 7.09 -51.92 -0.37 0.98 16 33 H 0.07 0.80 4.98 -51.93 -0.26 0.55 16 34 H 0.06 0.74 7.13 -51.93 -0.37 0.37 16 35 H 0.08 0.71 5.34 -51.93 -0.28 0.43 16 36 H 0.07 0.86 8.00 -51.93 -0.42 0.44 16 37 H 0.07 0.56 6.93 -51.93 -0.36 0.20 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 1.22 7.94 -51.93 -0.41 0.81 16 40 H 0.08 0.95 7.74 -51.93 -0.40 0.54 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.59 7.87 -51.93 -0.41 0.18 16 43 H 0.07 0.52 5.37 -51.93 -0.28 0.24 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 46 H 0.08 0.73 5.38 -51.93 -0.28 0.45 16 47 H 0.07 1.49 6.45 -51.93 -0.33 1.15 16 48 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 348.50 15.07 5.25 5.25 Total: -1.00 -30.38 348.50 -10.13 -40.51 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -7.76 Total: -0.41 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -0.81 Total: 4.97 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -1.87 Total: -56.19 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.38 -10.13 -40.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980276640.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.758 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds