Wall clock time and date at job start Fri Apr 10 2020 17:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36945 * 119.99749 * 2 1 4 4 H 1.07997 * 119.99325 * 204.06468 * 3 2 1 5 5 C 1.38807 * 120.00088 * 24.05775 * 3 2 1 6 6 N 1.31618 * 120.00202 * 10.88917 * 5 3 2 7 7 Si 1.86804 * 119.99917 * 190.88710 * 5 3 2 8 8 H 1.48497 * 109.46850 * 90.00158 * 7 5 3 9 9 H 1.48496 * 109.46971 * 210.00330 * 7 5 3 10 10 H 1.48501 * 109.46894 * 330.00473 * 7 5 3 11 11 C 1.46499 * 120.00140 * 180.27467 * 2 1 3 12 12 H 1.09000 * 110.64187 * 182.86848 * 11 2 1 13 13 C 1.55158 * 110.71873 * 306.20117 * 11 2 1 14 14 C 1.54909 * 101.58247 * 153.86261 * 13 11 2 15 15 N 1.47423 * 104.83105 * 322.99381 * 14 13 11 16 16 C 1.34783 * 125.64675 * 204.08997 * 15 14 13 17 17 O 1.21282 * 120.00115 * 180.02562 * 16 15 14 18 18 C 1.50698 * 120.00006 * 0.04222 * 16 15 14 19 19 C 1.54999 * 113.20382 * 61.45098 * 18 16 15 20 20 C 1.54056 * 104.76038 * 146.47552 * 19 18 16 21 21 N 1.48237 * 106.70247 * 1.01366 * 20 19 18 22 22 C 1.48803 * 105.17475 * 332.51559 * 21 20 19 23 23 C 1.47670 * 108.91424 * 88.16973 * 21 20 19 24 24 C 1.52991 * 109.28535 * 312.91933 * 23 21 20 25 25 C 1.54012 * 113.03165 * 299.52128 * 18 16 15 26 26 C 1.47020 * 108.70662 * 24.12598 * 15 14 13 27 27 H 1.08997 * 109.47425 * 274.58876 * 1 2 3 28 28 H 1.09001 * 109.47284 * 34.59143 * 1 2 3 29 29 H 1.09000 * 109.47354 * 154.58410 * 1 2 3 30 30 H 0.96994 * 120.00226 * 179.97438 * 6 5 3 31 31 H 1.08996 * 111.00657 * 271.93967 * 13 11 2 32 32 H 1.09010 * 111.00348 * 35.79223 * 13 11 2 33 33 H 1.08999 * 110.36869 * 204.15074 * 14 13 11 34 34 H 1.09000 * 110.45707 * 81.87466 * 14 13 11 35 35 H 1.08998 * 110.37788 * 265.29992 * 19 18 16 36 36 H 1.09001 * 110.37387 * 27.65526 * 19 18 16 37 37 H 1.08997 * 110.00917 * 120.32627 * 20 19 18 38 38 H 1.09001 * 110.00990 * 241.69928 * 20 19 18 39 39 H 1.09002 * 110.93621 * 284.56284 * 22 21 20 40 40 H 1.09003 * 110.93618 * 160.89312 * 22 21 20 41 41 H 1.09004 * 109.50117 * 72.85850 * 23 21 20 42 42 H 1.08998 * 109.50680 * 192.97275 * 23 21 20 43 43 H 1.09004 * 109.37085 * 64.97343 * 24 23 21 44 44 H 1.09001 * 109.37025 * 184.71794 * 24 23 21 45 45 H 1.09000 * 109.63206 * 291.84093 * 25 18 16 46 46 H 1.09001 * 109.63726 * 52.42844 * 25 18 16 47 47 H 1.09003 * 109.88106 * 239.52278 * 26 15 14 48 48 H 1.08999 * 110.01451 * 118.42796 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1592 1.2266 -0.3814 5 6 1.5460 2.3359 0.4900 6 7 0.4086 2.2532 1.1472 7 14 2.3480 4.0008 0.2169 8 1 1.8560 4.5841 -1.0569 9 1 2.0034 4.9067 1.3420 10 1 3.8222 3.8348 0.1486 11 6 2.1975 -1.2687 -0.0061 12 1 3.2719 -1.0923 0.0458 13 6 1.7297 -2.1782 1.1606 14 6 2.0524 -3.5877 0.6049 15 7 1.7467 -3.5047 -0.8349 16 6 1.4338 -4.5451 -1.6327 17 8 1.2003 -4.3590 -2.8082 18 6 1.3739 -5.9393 -1.0641 19 6 0.3042 -6.1007 0.0460 20 6 -0.2110 -7.5439 -0.1122 21 7 0.5523 -8.1487 -1.2299 22 6 0.9348 -7.0063 -2.1034 23 6 1.7898 -8.7504 -0.6940 24 6 2.4693 -7.7544 0.2477 25 6 2.7158 -6.4057 -0.4693 26 6 1.8403 -2.0994 -1.2566 27 1 -0.3634 0.0822 1.0243 28 1 -0.3634 0.8460 -0.5834 29 1 -0.3634 -0.9282 -0.4410 30 1 -0.0130 3.0567 1.4899 31 1 2.3002 -1.9756 2.0670 32 1 0.6605 -2.0645 1.3402 33 1 1.4229 -4.3377 1.0838 34 1 3.1055 -3.8249 0.7559 35 1 0.7541 -5.9638 1.0293 36 1 -0.5079 -5.3892 -0.1033 37 1 -0.0361 -8.1051 0.8057 38 1 -1.2751 -7.5363 -0.3482 39 1 0.0808 -6.6566 -2.6834 40 1 1.7636 -7.2768 -2.7577 41 1 1.5444 -9.6601 -0.1459 42 1 2.4633 -8.9911 -1.5166 43 1 1.8305 -7.5822 1.1140 44 1 3.4242 -8.1631 0.5784 45 1 3.4446 -6.5381 -1.2690 46 1 3.0790 -5.6636 0.2417 47 1 0.8832 -1.7690 -1.6603 48 1 2.6191 -1.9874 -2.0109 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980276640.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:55 Heat of formation + Delta-G solvation = -9.441925 kcal Electronic energy + Delta-G solvation = -27105.246005 eV Core-core repulsion = 23581.124266 eV Total energy + Delta-G solvation = -3524.121740 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.41253 -40.44879 -38.80437 -36.60870 -33.92384 -33.02728 -32.87096 -31.26270 -30.25185 -29.39919 -28.09181 -26.05618 -25.32477 -24.12095 -23.75590 -22.08578 -21.04174 -20.80520 -19.98067 -18.95601 -17.91876 -17.59208 -17.13799 -16.94513 -16.38935 -16.03231 -15.60633 -15.17404 -14.98540 -14.88014 -14.48599 -14.45126 -14.17507 -14.02070 -13.66739 -13.54692 -13.39687 -13.26524 -13.05208 -12.84699 -12.73938 -12.63799 -12.44954 -12.37938 -12.27139 -12.09779 -11.98394 -11.84492 -11.73892 -11.60188 -11.54440 -11.38336 -10.78777 -10.65817 -9.70743 -9.49670 -8.82425 -7.85744 -5.36251 1.46454 1.48447 1.49866 1.56464 1.89222 2.49524 2.93293 3.26416 3.36089 3.50747 3.54233 3.68985 3.76710 3.85807 4.02216 4.09913 4.11764 4.15931 4.24746 4.29049 4.36759 4.40558 4.45801 4.54877 4.60006 4.64622 4.70627 4.81051 4.88336 4.90305 4.95420 4.96333 4.97495 5.07295 5.11225 5.14068 5.18249 5.23202 5.29290 5.32889 5.37321 5.61804 5.66271 5.75842 6.00819 6.29655 6.51160 7.06003 7.11805 7.80953 8.26225 9.17765 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.034283 B = 0.003173 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.546814 B = 8821.284944 C = 8873.323727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.602 5.602 3 C -0.270 4.270 4 H 0.074 0.926 5 C -0.047 4.047 6 N -0.935 5.935 7 Si 0.969 3.031 8 H -0.290 1.290 9 H -0.294 1.294 10 H -0.266 1.266 11 C 0.167 3.833 12 H 0.083 0.917 13 C -0.141 4.141 14 C 0.103 3.897 15 N -0.606 5.606 16 C 0.542 3.458 17 O -0.590 6.590 18 C -0.110 4.110 19 C -0.133 4.133 20 C 0.033 3.967 21 N -0.504 5.504 22 C 0.060 3.940 23 C 0.029 3.971 24 C -0.146 4.146 25 C -0.108 4.108 26 C 0.097 3.903 27 H 0.013 0.987 28 H 0.011 0.989 29 H 0.017 0.983 30 H 0.249 0.751 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.055 0.945 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.085 0.915 47 H 0.041 0.959 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.315 -23.239 2.919 23.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.324 5.324 3 C -0.399 4.399 4 H 0.091 0.909 5 C -0.243 4.243 6 N -0.581 5.581 7 Si 0.798 3.202 8 H -0.218 1.218 9 H -0.220 1.220 10 H -0.190 1.190 11 C 0.059 3.941 12 H 0.101 0.899 13 C -0.181 4.181 14 C -0.018 4.018 15 N -0.339 5.339 16 C 0.331 3.669 17 O -0.471 6.471 18 C -0.114 4.114 19 C -0.172 4.172 20 C -0.095 4.095 21 N -0.224 5.224 22 C -0.069 4.069 23 C -0.099 4.099 24 C -0.184 4.184 25 C -0.146 4.146 26 C -0.028 4.028 27 H 0.031 0.969 28 H 0.030 0.970 29 H 0.036 0.964 30 H 0.058 0.942 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.074 0.926 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.115 0.885 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.108 0.892 45 H 0.082 0.918 46 H 0.103 0.897 47 H 0.060 0.940 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.739 -23.534 2.038 23.916 hybrid contribution 0.386 2.368 -0.121 2.402 sum 4.125 -21.166 1.917 21.650 Atomic orbital electron populations 1.20417 0.83034 0.95023 0.97674 1.44006 1.01811 1.01083 1.85472 1.19571 0.99227 0.86806 1.34337 0.90863 1.25790 0.98428 1.01874 0.98191 1.70207 1.20057 1.27871 1.40002 0.85235 0.78613 0.79770 0.76608 1.21760 1.22003 1.19023 1.21470 0.96210 0.84802 0.91651 0.89856 1.23208 1.01789 0.93846 0.99227 1.22715 1.02248 0.98106 0.78752 1.48507 1.67597 1.06357 1.11400 1.20415 0.75245 0.86195 0.85032 1.90665 1.51937 1.86098 1.18407 1.22521 1.00172 0.90317 0.98440 1.23028 0.96902 0.98956 0.98338 1.23121 0.99047 0.92087 0.95243 1.66421 1.17726 1.23719 1.14571 1.23223 1.00411 0.88493 0.94816 1.22717 0.90737 0.97847 0.98571 1.22482 1.02887 0.93863 0.99172 1.22230 0.93175 0.98693 1.00455 1.22438 1.00149 0.81129 0.99120 0.96889 0.97017 0.96442 0.94197 0.89085 0.92239 0.88153 0.88805 0.87903 0.92609 0.88108 0.90409 0.91580 0.90117 0.88528 0.90662 0.89920 0.89177 0.91839 0.89654 0.94031 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.15 7.45 127.77 0.95 10.11 16 2 N -0.60 -29.49 2.93 -696.15 -2.04 -31.53 16 3 C -0.27 -14.48 9.60 84.03 0.81 -13.67 16 4 H 0.07 3.79 7.85 -2.91 -0.02 3.77 16 5 C -0.05 -2.60 5.14 84.86 0.44 -2.17 16 6 N -0.94 -54.44 10.66 21.65 0.23 -54.21 16 7 Si 0.97 44.49 29.57 68.60 2.03 46.52 16 8 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 9 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 C 0.17 6.41 3.44 46.18 0.16 6.56 16 12 H 0.08 3.10 7.95 -2.39 -0.02 3.09 16 13 C -0.14 -4.30 6.62 31.99 0.21 -4.09 16 14 C 0.10 2.36 5.19 86.86 0.45 2.81 16 15 N -0.61 -18.37 3.33 -811.79 -2.70 -21.07 16 16 C 0.54 16.96 6.87 87.66 0.60 17.57 16 17 O -0.59 -23.87 16.50 -3.04 -0.05 -23.92 16 18 C -0.11 -2.37 0.69 -51.12 -0.04 -2.40 16 19 C -0.13 -2.33 4.26 31.64 0.13 -2.20 16 20 C 0.03 0.50 6.20 86.40 0.54 1.04 16 21 N -0.50 -8.91 6.06 -878.41 -5.33 -14.24 16 22 C 0.06 1.35 5.45 86.72 0.47 1.83 16 23 C 0.03 0.36 5.86 86.15 0.50 0.87 16 24 C -0.15 -1.51 5.53 31.18 0.17 -1.34 16 25 C -0.11 -1.69 5.01 31.52 0.16 -1.53 16 26 C 0.10 3.62 6.39 86.73 0.55 4.17 16 27 H 0.01 0.69 7.36 -2.39 -0.02 0.67 16 28 H 0.01 0.62 7.32 -2.39 -0.02 0.60 16 29 H 0.02 0.78 6.58 -2.39 -0.02 0.76 16 30 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 31 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.06 2.04 7.09 -2.38 -0.02 2.02 16 33 H 0.10 1.80 4.98 -2.39 -0.01 1.78 16 34 H 0.09 1.70 7.13 -2.39 -0.02 1.68 16 35 H 0.10 1.33 5.34 -2.39 -0.01 1.32 16 36 H 0.06 1.20 8.00 -2.39 -0.02 1.18 16 37 H 0.10 1.04 6.93 -2.39 -0.02 1.02 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.82 7.94 -2.39 -0.02 1.80 16 40 H 0.08 1.82 7.74 -2.39 -0.02 1.80 16 41 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.07 0.95 7.87 -2.39 -0.02 0.94 16 43 H 0.08 0.72 5.37 -2.38 -0.01 0.71 16 44 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.06 1.09 8.11 -2.39 -0.02 1.07 16 46 H 0.09 1.22 5.38 -2.39 -0.01 1.20 16 47 H 0.04 1.79 6.45 -2.39 -0.02 1.78 16 48 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -68.53 348.50 -0.79 -69.33 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.95 Total: 11.58 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 6.12 Total: 17.55 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -9.84 Total: -121.05 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.05 Total: -23.92 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -68.53 -0.79 -69.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980276640.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.884 kcal (2) G-P(sol) polarization free energy of solvation -68.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds