Wall clock time and date at job start Fri Apr 10 2020 17:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47426 * 2 1 4 4 C 1.35315 * 125.87044 * 125.00240 * 3 2 1 5 5 C 1.35353 * 106.17299 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.75036 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47078 * 125.00318 * 6 5 4 8 8 O 1.21283 * 120.00031 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99863 * 180.02562 * 7 6 5 10 10 C 1.47423 * 125.65136 * 359.94184 * 9 7 6 11 11 C 1.54907 * 104.83389 * 155.92354 * 10 9 7 12 12 C 1.55154 * 101.58028 * 37.00608 * 11 10 9 13 13 H 1.09002 * 110.71758 * 82.86829 * 12 11 10 14 14 N 1.46504 * 110.72115 * 206.13249 * 12 11 10 15 15 C 1.36935 * 120.00499 * 268.52945 * 14 12 11 16 16 H 1.08004 * 119.99410 * 359.97438 * 15 14 12 17 17 C 1.38809 * 120.00015 * 180.02562 * 15 14 12 18 18 N 1.31618 * 120.00384 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99707 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47464 * 59.99877 * 19 17 15 21 21 H 1.48504 * 109.47090 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47323 * 299.99694 * 19 17 15 23 23 C 1.47026 * 125.64538 * 179.97438 * 9 7 6 24 24 H 1.09005 * 110.01070 * 61.52249 * 23 9 7 25 25 C 1.52997 * 109.88309 * 300.42781 * 23 9 7 26 26 N 1.33773 * 106.49631 * 0.26268 * 5 4 3 27 27 N 1.28630 * 108.88834 * 359.56284 * 26 5 4 28 28 H 1.09001 * 109.46818 * 300.00453 * 1 2 3 29 29 H 1.08999 * 109.47077 * 59.99921 * 1 2 3 30 30 H 1.08991 * 109.47341 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47243 * 239.99779 * 2 1 3 32 32 H 1.08999 * 109.47077 * 120.00078 * 2 1 3 33 33 H 1.07992 * 126.90945 * 359.97438 * 4 3 2 34 34 H 1.09005 * 109.46687 * 5.00419 * 6 5 4 35 35 H 1.09001 * 109.47490 * 245.00430 * 6 5 4 36 36 H 1.09001 * 110.36690 * 37.08054 * 10 9 7 37 37 H 1.08999 * 110.45546 * 274.80806 * 10 9 7 38 38 H 1.09000 * 111.00056 * 278.93619 * 11 10 9 39 39 H 1.08999 * 111.03738 * 155.09946 * 11 10 9 40 40 H 0.97002 * 119.99396 * 88.52547 * 14 12 11 41 41 H 0.96998 * 120.00318 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.47153 * 302.19087 * 25 23 9 43 43 H 1.09001 * 109.46832 * 182.19278 * 25 23 9 44 44 H 1.09004 * 109.47261 * 62.19259 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8757 1.9190 0.8982 5 6 3.0534 3.2078 0.5248 6 6 3.9219 4.2328 1.2075 7 6 4.8932 4.8118 0.2114 8 8 4.8817 4.4294 -0.9395 9 7 5.7755 5.7538 0.5997 10 6 5.8982 6.3072 1.9606 11 6 7.3547 6.8277 2.0472 12 6 7.5715 7.3860 0.6159 13 1 7.1666 8.3944 0.5299 14 7 8.9927 7.3646 0.2609 15 6 9.7779 8.4578 0.5128 16 1 9.3494 9.3360 0.9728 17 6 11.1244 8.4377 0.1760 18 7 11.6465 7.3676 -0.3851 19 14 12.1953 9.9292 0.5190 20 1 12.1943 10.2149 1.9763 21 1 13.5840 9.6554 0.0697 22 1 11.6593 11.1030 -0.2158 23 6 6.7744 6.4002 -0.2640 24 1 6.2772 6.9410 -1.0693 25 6 7.7162 5.3461 -0.8493 26 7 2.3014 3.3945 -0.5657 27 7 1.7052 2.2918 -0.8542 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3267 1.4204 1.7434 34 1 4.4734 3.7588 2.0195 35 1 3.2961 5.0294 1.6099 36 1 5.7290 5.5279 2.7037 37 1 5.1935 7.1263 2.1037 38 1 8.0484 6.0139 2.2583 39 1 7.4441 7.6179 2.7926 40 1 9.3774 6.5760 -0.1525 41 1 12.5875 7.3534 -0.6201 42 1 8.1961 4.7974 -0.0389 43 1 8.4771 5.8361 -1.4569 44 1 7.1465 4.6539 -1.4693 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986601064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:42 Heat of formation + Delta-G solvation = 59.657664 kcal Electronic energy + Delta-G solvation = -25147.116351 eV Core-core repulsion = 21522.450651 eV Total energy + Delta-G solvation = -3624.665700 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.16500 -41.16743 -38.83779 -36.38741 -35.87545 -33.91487 -33.14596 -32.02633 -31.68897 -30.76519 -28.78836 -26.73998 -25.54289 -25.36569 -23.91660 -22.80632 -22.11605 -20.82614 -19.79392 -19.43200 -18.24305 -18.02239 -17.23538 -17.01951 -16.52416 -16.40297 -15.75754 -15.70581 -15.43805 -15.22927 -14.72423 -14.62923 -14.29874 -13.81961 -13.61936 -13.56124 -13.40098 -13.16036 -13.02769 -12.89923 -12.86685 -12.78246 -12.64103 -12.46534 -12.29531 -12.10194 -12.01565 -11.62721 -11.57232 -11.47932 -10.94518 -10.88241 -10.76365 -10.08106 -9.56338 -8.98662 -7.91615 -5.20491 0.72048 1.47007 1.50535 1.53281 1.59010 1.61723 1.76465 2.14391 2.59858 3.34376 3.39929 3.59195 3.74954 3.85170 3.94327 3.96487 3.99516 4.06047 4.23465 4.25953 4.31296 4.42329 4.46981 4.47325 4.58666 4.62670 4.70937 4.76102 4.77341 4.86594 4.91810 5.03594 5.10547 5.14884 5.24161 5.27194 5.32904 5.41400 5.55368 5.58628 5.78566 6.29830 6.69426 7.30457 7.36951 7.61432 8.11343 8.34873 9.31855 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.043779 B = 0.002457 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.425820 B =11392.102973 C =11620.673059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.101 3.899 3 N -0.289 5.289 4 C -0.026 4.026 5 C -0.034 4.034 6 C -0.038 4.038 7 C 0.521 3.479 8 O -0.579 6.579 9 N -0.611 5.611 10 C 0.104 3.896 11 C -0.144 4.144 12 C 0.164 3.836 13 H 0.066 0.934 14 N -0.732 5.732 15 C -0.238 4.238 16 H 0.081 0.919 17 C -0.078 4.078 18 N -0.972 5.972 19 Si 0.974 3.026 20 H -0.274 1.274 21 H -0.301 1.301 22 H -0.280 1.280 23 C 0.134 3.866 24 H 0.052 0.948 25 C -0.140 4.140 26 N -0.295 5.295 27 N -0.129 5.129 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.147 0.853 33 H 0.241 0.759 34 H 0.153 0.847 35 H 0.131 0.869 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.380 0.620 41 H 0.250 0.750 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.887 -15.476 11.802 29.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.018 4.018 3 N -0.083 5.083 4 C -0.178 4.178 5 C -0.174 4.174 6 C -0.079 4.079 7 C 0.311 3.689 8 O -0.458 6.458 9 N -0.345 5.345 10 C -0.018 4.018 11 C -0.185 4.185 12 C 0.054 3.946 13 H 0.084 0.916 14 N -0.374 5.374 15 C -0.370 4.370 16 H 0.099 0.901 17 C -0.270 4.270 18 N -0.622 5.622 19 Si 0.803 3.197 20 H -0.200 1.200 21 H -0.227 1.227 22 H -0.207 1.207 23 C 0.029 3.971 24 H 0.071 0.929 25 C -0.198 4.198 26 N -0.161 5.161 27 N -0.108 5.108 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.128 0.872 31 H 0.121 0.879 32 H 0.164 0.836 33 H 0.257 0.743 34 H 0.171 0.829 35 H 0.148 0.852 36 H 0.131 0.869 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.215 0.785 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -22.760 -15.283 9.923 29.156 hybrid contribution 1.790 0.287 0.100 1.815 sum -20.971 -14.996 10.023 27.660 Atomic orbital electron populations 1.22050 0.92477 1.04928 1.02570 1.22573 0.97185 0.74544 1.07505 1.47878 1.29976 1.12864 1.17570 1.24038 0.99105 0.94265 1.00407 1.21757 1.02872 0.96027 0.96747 1.19977 0.94303 0.97377 0.96202 1.20854 0.80664 0.78139 0.89238 1.90716 1.71607 1.61341 1.22123 1.48635 1.33935 1.39463 1.12497 1.22584 0.96788 0.99969 0.82455 1.23348 0.95553 1.01088 0.98497 1.21401 0.84095 0.96088 0.92995 0.91594 1.42833 1.04387 1.16915 1.73304 1.19637 0.90947 0.94576 1.31819 0.90063 1.25571 0.98663 1.00336 1.02430 1.69820 1.12737 1.30166 1.49500 0.85200 0.77341 0.79050 0.78078 1.19996 1.22714 1.20660 1.21531 0.88953 0.93506 0.93136 0.92948 1.21773 0.98747 0.98708 1.00585 1.75043 1.09475 1.17228 1.14316 1.78192 1.22560 0.93524 1.16492 0.92120 0.93231 0.87174 0.87900 0.83555 0.74300 0.82921 0.85154 0.86938 0.89013 0.92295 0.89307 0.78455 0.94155 0.92972 0.92935 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 10.04 71.98 0.72 -0.45 16 2 C 0.10 0.76 7.17 86.38 0.62 1.37 16 3 N -0.29 -5.31 3.44 -347.74 -1.20 -6.51 16 4 C -0.03 -0.41 11.49 83.49 0.96 0.55 16 5 C -0.03 -0.82 6.00 41.60 0.25 -0.57 16 6 C -0.04 -0.70 5.29 29.10 0.15 -0.55 16 7 C 0.52 15.81 7.62 87.66 0.67 16.48 16 8 O -0.58 -23.96 14.52 -3.04 -0.04 -24.00 16 9 N -0.61 -17.75 3.08 -788.06 -2.43 -20.18 16 10 C 0.10 2.13 6.69 86.85 0.58 2.71 16 11 C -0.14 -4.19 6.77 31.98 0.22 -3.98 16 12 C 0.16 6.24 3.48 46.18 0.16 6.40 16 13 H 0.07 2.49 8.09 -2.39 -0.02 2.47 16 14 N -0.73 -36.04 4.94 -317.34 -1.57 -37.60 16 15 C -0.24 -12.81 9.96 84.03 0.84 -11.97 16 16 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 17 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 18 N -0.97 -59.36 13.06 21.65 0.28 -59.07 16 19 Si 0.97 45.58 29.55 68.60 2.03 47.61 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 C 0.13 4.94 3.48 45.34 0.16 5.10 16 24 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 25 C -0.14 -5.70 7.93 71.98 0.57 -5.13 16 26 N -0.30 -9.74 11.84 -48.60 -0.58 -10.32 16 27 N -0.13 -3.74 12.91 37.02 0.48 -3.26 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.63 8.12 -2.39 -0.02 0.61 16 30 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.15 -0.12 8.07 -2.39 -0.02 -0.14 16 33 H 0.24 0.93 8.06 -2.91 -0.02 0.91 16 34 H 0.15 1.41 7.83 -2.38 -0.02 1.39 16 35 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.11 1.42 7.48 -2.39 -0.02 1.40 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.38 20.27 5.06 -92.71 -0.47 19.80 16 41 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 42 H 0.05 2.09 8.04 -2.39 -0.02 2.07 16 43 H 0.05 2.39 6.76 -2.39 -0.02 2.37 16 44 H 0.05 2.07 6.77 -2.38 -0.02 2.06 16 Total: -1.00 -86.21 361.62 3.88 -82.34 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.53 Total: 24.99 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 6.36 Total: 6.01 kcal Atomic # 7 Polarization: -131.94 SS G_CDS: -5.01 Total: -136.94 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.04 Total: -24.00 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -86.21 3.88 -82.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986601064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.996 kcal (2) G-P(sol) polarization free energy of solvation -86.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds