Wall clock time and date at job start Fri Apr 10 2020 17:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00251 * 2 1 4 4 H 1.48499 * 109.47189 * 269.99978 * 3 2 1 5 5 H 1.48499 * 109.47099 * 30.00239 * 3 2 1 6 6 H 1.48496 * 109.47215 * 150.00158 * 3 2 1 7 7 C 1.38816 * 119.99508 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99750 * 163.07067 * 7 2 1 9 9 N 1.36932 * 120.00413 * 343.07653 * 7 2 1 10 10 C 1.46931 * 120.62625 * 331.84505 * 9 7 2 11 11 C 1.53199 * 108.77432 * 233.58631 * 10 9 7 12 12 C 1.53044 * 109.31156 * 305.36777 * 11 10 9 13 13 O 1.45203 * 109.45698 * 181.38500 * 12 11 10 14 14 C 1.34816 * 116.99906 * 150.00037 * 13 12 11 15 15 O 1.21538 * 120.00032 * 0.02562 * 14 13 12 16 16 C 1.47135 * 119.99879 * 179.97438 * 14 13 12 17 17 C 1.36641 * 125.81214 * 180.02562 * 16 14 13 18 18 C 1.40046 * 106.91702 * 180.02562 * 17 16 14 19 19 C 1.36570 * 106.93372 * 359.97438 * 18 17 16 20 20 C 1.47332 * 125.79819 * 179.97438 * 19 18 17 21 21 N 1.34773 * 120.00413 * 179.97438 * 20 19 18 22 22 O 1.21608 * 119.99799 * 359.97438 * 20 19 18 23 23 O 1.34528 * 108.40812 * 0.22905 * 19 18 17 24 24 C 1.53039 * 109.53683 * 61.36277 * 12 11 10 25 25 C 1.46920 * 120.63434 * 151.82632 * 9 7 2 26 26 H 0.97001 * 119.99901 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.58618 * 113.80090 * 10 9 7 28 28 H 1.09000 * 109.70514 * 353.44224 * 10 9 7 29 29 H 1.08993 * 109.49722 * 185.41275 * 11 10 9 30 30 H 1.08997 * 109.52070 * 65.33424 * 11 10 9 31 31 H 1.08993 * 109.45772 * 301.35731 * 12 11 10 32 32 H 1.07999 * 126.54384 * 359.97438 * 17 16 14 33 33 H 1.07993 * 126.53113 * 180.02562 * 18 17 16 34 34 H 0.97003 * 119.99845 * 0.02562 * 21 20 19 35 35 H 0.96999 * 120.00161 * 179.72083 * 21 20 19 36 36 H 1.09000 * 109.49701 * 58.58742 * 24 12 11 37 37 H 1.09001 * 109.49263 * 178.67724 * 24 12 11 38 38 H 1.09006 * 109.58475 * 246.19947 * 25 9 7 39 39 H 1.08997 * 109.58893 * 6.47807 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2227 -0.2718 9 7 1.3700 -2.3623 0.3462 10 6 0.2259 -2.3398 1.2679 11 6 0.4972 -3.3189 2.4146 12 6 0.8117 -4.7006 1.8365 13 8 1.0372 -5.6389 2.9215 14 6 0.7167 -6.9282 2.6922 15 8 0.2618 -7.2589 1.6148 16 6 0.9188 -7.9351 3.7459 17 6 0.6371 -9.2681 3.6425 18 6 0.9788 -9.8531 4.8683 19 6 1.4549 -8.8530 5.6673 20 6 1.9328 -9.0101 7.0520 21 7 2.3805 -7.9386 7.7361 22 8 1.9232 -10.1065 7.5779 23 8 1.4082 -7.6992 4.9771 24 6 2.0671 -4.6172 0.9652 25 6 1.8136 -3.6529 -0.1977 26 1 -0.4850 0.8401 -0.0004 27 1 -0.6772 -2.6403 0.7368 28 1 0.0966 -1.3344 1.6688 29 1 -0.3833 -3.3837 3.0536 30 1 1.3467 -2.9676 3.0002 31 1 -0.0284 -5.0407 1.2310 32 1 0.2281 -9.7740 2.7805 33 1 0.8845 -10.8962 5.1312 34 1 2.3878 -7.0639 7.3168 35 1 2.6913 -8.0413 8.6491 36 1 2.9021 -4.2535 1.5641 37 1 2.3039 -5.6063 0.5729 38 1 1.0400 -4.0606 -0.8484 39 1 2.7330 -3.5132 -0.7663 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747250505.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:52 Heat of formation + Delta-G solvation = -85.041090 kcal Electronic energy + Delta-G solvation = -24836.432272 eV Core-core repulsion = 20939.647455 eV Total energy + Delta-G solvation = -3896.784817 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.125 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -43.24405 -40.39497 -39.62910 -37.61753 -36.04207 -34.39547 -33.48641 -32.79776 -30.92384 -30.35658 -29.67288 -26.02627 -24.85339 -23.04946 -22.34511 -22.00366 -21.38682 -20.61560 -19.48006 -18.99440 -18.10547 -17.32825 -17.16276 -17.10624 -16.54596 -15.71328 -15.07638 -14.90218 -14.79131 -14.25619 -13.79235 -13.65604 -13.61460 -13.51718 -13.45315 -13.13788 -12.88893 -12.57127 -11.62096 -11.38654 -11.22609 -11.11712 -10.90649 -10.79102 -10.75831 -10.58400 -10.42236 -10.30493 -10.27231 -9.97940 -9.74911 -9.57122 -9.27694 -8.55089 -6.79300 -5.87564 -3.30252 0.13730 1.41674 1.81759 2.58420 2.63549 2.64615 3.05009 3.33580 3.40835 3.43131 4.25748 4.34766 4.43287 4.58079 5.01133 5.05688 5.14529 5.25721 5.32475 5.34886 5.44620 5.60935 5.72069 5.87789 6.04146 6.12821 6.14498 6.25519 6.31783 6.41256 6.49336 6.63415 6.65277 6.74925 6.85843 7.20664 7.49713 7.57349 7.60918 7.72808 8.35877 9.11814 9.74434 10.30707 11.21820 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.026029 B = 0.002746 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.461008 B =10193.485716 C =10837.826830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.135 4.135 12 C 0.098 3.902 13 O -0.343 6.343 14 C 0.544 3.456 15 O -0.478 6.478 16 C -0.013 4.013 17 C -0.128 4.128 18 C -0.129 4.129 19 C -0.048 4.048 20 C 0.611 3.389 21 N -0.838 5.838 22 O -0.517 6.517 23 O -0.138 6.138 24 C -0.148 4.148 25 C 0.149 3.851 26 H 0.255 0.745 27 H 0.023 0.977 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.174 0.826 33 H 0.173 0.827 34 H 0.412 0.588 35 H 0.412 0.588 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.023 0.977 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.277 -16.017 12.252 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.085 0.915 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.175 4.175 12 C 0.045 3.955 13 O -0.259 6.259 14 C 0.387 3.613 15 O -0.366 6.366 16 C -0.065 4.065 17 C -0.147 4.147 18 C -0.150 4.150 19 C -0.103 4.103 20 C 0.395 3.605 21 N -0.402 5.402 22 O -0.394 6.394 23 O -0.033 6.033 24 C -0.187 4.187 25 C 0.022 3.978 26 H 0.065 0.935 27 H 0.041 0.959 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.192 0.808 33 H 0.190 0.810 34 H 0.241 0.759 35 H 0.244 0.756 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.063 -16.357 12.192 20.504 hybrid contribution 0.434 1.114 -0.003 1.195 sum 2.496 -15.243 12.189 19.676 Atomic orbital electron populations 1.70011 1.05307 1.25737 1.53665 1.25073 0.95319 0.98551 1.00589 0.86275 0.79170 0.83418 0.77784 1.21317 1.21492 1.20407 1.19177 0.92658 0.84642 1.42040 0.91499 1.44123 1.35779 1.01726 1.49867 1.20824 0.88968 0.97946 0.87469 1.22499 1.01437 0.92358 1.01195 1.23148 0.99387 0.87148 0.85848 1.86709 1.76385 1.16730 1.46117 1.19271 0.75352 0.82315 0.84386 1.90942 1.41392 1.80989 1.23300 1.21383 1.06531 0.94335 0.84270 1.22040 1.01433 0.91499 0.99776 1.21992 0.99844 1.01023 0.92122 1.22411 1.08614 0.84621 0.94621 1.16591 0.76981 0.84731 0.82217 1.43714 1.66611 1.11194 1.18690 1.90930 1.55524 1.25334 1.67634 1.84140 1.63636 1.33055 1.22449 1.22504 0.97022 1.00239 0.98950 1.20862 0.98376 0.86390 0.92164 0.93462 0.95854 0.88426 0.92203 0.91282 0.89864 0.80805 0.80969 0.75868 0.75594 0.91154 0.92487 0.95918 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.48 11.19 55.49 0.62 -24.85 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 21.09 29.59 -169.99 -5.03 16.06 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.26 -6.82 9.58 -15.06 -0.14 -6.97 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.44 2.99 -172.32 -0.52 -14.96 16 10 C 0.17 3.99 5.30 -3.70 -0.02 3.97 16 11 C -0.14 -2.53 5.74 -26.61 -0.15 -2.68 16 12 C 0.10 1.73 2.42 -26.69 -0.06 1.66 16 13 O -0.34 -5.51 9.89 -42.23 -0.42 -5.93 16 14 C 0.54 8.10 7.93 34.34 0.27 8.38 16 15 O -0.48 -7.95 16.12 -19.29 -0.31 -8.26 16 16 C -0.01 -0.15 7.19 -36.55 -0.26 -0.42 16 17 C -0.13 -1.28 10.60 -39.48 -0.42 -1.69 16 18 C -0.13 -1.19 10.59 -39.51 -0.42 -1.61 16 19 C -0.05 -0.49 7.14 -36.49 -0.26 -0.75 16 20 C 0.61 5.80 8.08 -12.56 -0.10 5.70 16 21 N -0.84 -5.01 8.87 30.41 0.27 -4.74 16 22 O -0.52 -6.35 17.70 5.27 0.09 -6.26 16 23 O -0.14 -1.55 10.41 4.13 0.04 -1.51 16 24 C -0.15 -2.63 5.72 -26.62 -0.15 -2.78 16 25 C 0.15 3.07 6.52 -3.72 -0.02 3.05 16 26 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.10 2.48 6.07 -51.93 -0.31 2.17 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.08 1.53 7.16 -51.93 -0.37 1.16 16 32 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.41 1.95 8.59 -40.82 -0.35 1.60 16 35 H 0.41 1.66 8.93 -40.82 -0.36 1.30 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 LS Contribution 339.65 15.07 5.12 5.12 Total: -1.00 -31.57 339.65 -6.71 -38.27 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -4.74 Total: 1.19 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -1.83 Total: 5.87 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.38 Total: -44.56 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.59 Total: -21.95 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.57 -6.71 -38.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747250505.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.767 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds