Wall clock time and date at job start Fri Apr 10 2020 17:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00251 * 2 1 4 4 H 1.48499 * 109.47189 * 269.99978 * 3 2 1 5 5 H 1.48499 * 109.47099 * 30.00239 * 3 2 1 6 6 H 1.48496 * 109.47215 * 150.00158 * 3 2 1 7 7 C 1.38816 * 119.99508 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99750 * 163.07067 * 7 2 1 9 9 N 1.36932 * 120.00413 * 343.07653 * 7 2 1 10 10 C 1.46931 * 120.62625 * 331.84505 * 9 7 2 11 11 C 1.53199 * 108.77432 * 233.58631 * 10 9 7 12 12 C 1.53044 * 109.31156 * 305.36777 * 11 10 9 13 13 O 1.45203 * 109.45698 * 181.38500 * 12 11 10 14 14 C 1.34816 * 116.99906 * 150.00037 * 13 12 11 15 15 O 1.21538 * 120.00032 * 0.02562 * 14 13 12 16 16 C 1.47135 * 119.99879 * 179.97438 * 14 13 12 17 17 C 1.36641 * 125.81214 * 180.02562 * 16 14 13 18 18 C 1.40046 * 106.91702 * 180.02562 * 17 16 14 19 19 C 1.36570 * 106.93372 * 359.97438 * 18 17 16 20 20 C 1.47332 * 125.79819 * 179.97438 * 19 18 17 21 21 N 1.34773 * 120.00413 * 179.97438 * 20 19 18 22 22 O 1.21608 * 119.99799 * 359.97438 * 20 19 18 23 23 O 1.34528 * 108.40812 * 0.22905 * 19 18 17 24 24 C 1.53039 * 109.53683 * 61.36277 * 12 11 10 25 25 C 1.46920 * 120.63434 * 151.82632 * 9 7 2 26 26 H 0.97001 * 119.99901 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.58618 * 113.80090 * 10 9 7 28 28 H 1.09000 * 109.70514 * 353.44224 * 10 9 7 29 29 H 1.08993 * 109.49722 * 185.41275 * 11 10 9 30 30 H 1.08997 * 109.52070 * 65.33424 * 11 10 9 31 31 H 1.08993 * 109.45772 * 301.35731 * 12 11 10 32 32 H 1.07999 * 126.54384 * 359.97438 * 17 16 14 33 33 H 1.07993 * 126.53113 * 180.02562 * 18 17 16 34 34 H 0.97003 * 119.99845 * 0.02562 * 21 20 19 35 35 H 0.96999 * 120.00161 * 179.72083 * 21 20 19 36 36 H 1.09000 * 109.49701 * 58.58742 * 24 12 11 37 37 H 1.09001 * 109.49263 * 178.67724 * 24 12 11 38 38 H 1.09006 * 109.58475 * 246.19947 * 25 9 7 39 39 H 1.08997 * 109.58893 * 6.47807 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2227 -0.2718 9 7 1.3700 -2.3623 0.3462 10 6 0.2259 -2.3398 1.2679 11 6 0.4972 -3.3189 2.4146 12 6 0.8117 -4.7006 1.8365 13 8 1.0372 -5.6389 2.9215 14 6 0.7167 -6.9282 2.6922 15 8 0.2618 -7.2589 1.6148 16 6 0.9188 -7.9351 3.7459 17 6 0.6371 -9.2681 3.6425 18 6 0.9788 -9.8531 4.8683 19 6 1.4549 -8.8530 5.6673 20 6 1.9328 -9.0101 7.0520 21 7 2.3805 -7.9386 7.7361 22 8 1.9232 -10.1065 7.5779 23 8 1.4082 -7.6992 4.9771 24 6 2.0671 -4.6172 0.9652 25 6 1.8136 -3.6529 -0.1977 26 1 -0.4850 0.8401 -0.0004 27 1 -0.6772 -2.6403 0.7368 28 1 0.0966 -1.3344 1.6688 29 1 -0.3833 -3.3837 3.0536 30 1 1.3467 -2.9676 3.0002 31 1 -0.0284 -5.0407 1.2310 32 1 0.2281 -9.7740 2.7805 33 1 0.8845 -10.8962 5.1312 34 1 2.3878 -7.0639 7.3168 35 1 2.6913 -8.0413 8.6491 36 1 2.9021 -4.2535 1.5641 37 1 2.3039 -5.6063 0.5729 38 1 1.0400 -4.0606 -0.8484 39 1 2.7330 -3.5132 -0.7663 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747250505.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:50 Heat of formation + Delta-G solvation = -106.446952 kcal Electronic energy + Delta-G solvation = -24837.360500 eV Core-core repulsion = 20939.647455 eV Total energy + Delta-G solvation = -3897.713044 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.125 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.06921 -41.63578 -40.40134 -39.14669 -37.48162 -35.08222 -34.63607 -34.25423 -32.29374 -31.71077 -31.28694 -27.45858 -26.24784 -24.27241 -23.90406 -23.23130 -22.39281 -21.51327 -21.07227 -19.90662 -19.07276 -18.88264 -18.05326 -17.99208 -17.90871 -16.97028 -16.73484 -15.97246 -15.67686 -15.61437 -15.41760 -15.01251 -14.86970 -14.59970 -14.40920 -14.34164 -14.26508 -14.17492 -13.30447 -13.07852 -12.80617 -12.61268 -12.50540 -12.33076 -12.07006 -12.00094 -11.84252 -11.74462 -11.45326 -11.35674 -11.13032 -10.94037 -10.56219 -10.11929 -8.75760 -7.90740 -5.36258 -0.74841 0.58037 0.87494 1.48275 1.50403 1.56589 1.60179 1.60874 1.89628 2.33640 2.51039 3.25116 3.34715 3.57560 3.59518 3.74582 3.76845 3.80768 4.10884 4.20358 4.26771 4.34858 4.55850 4.62907 4.70660 4.74997 4.85473 4.94004 5.00990 5.03510 5.18748 5.27176 5.32582 5.41418 5.62218 5.66797 5.67454 6.13212 6.36024 6.40729 6.97966 7.11375 7.79819 8.32317 9.17112 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.026029 B = 0.002746 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.461008 B =10193.485716 C =10837.826830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.266 4.266 8 H 0.069 0.931 9 N -0.611 5.611 10 C 0.180 3.820 11 C -0.122 4.122 12 C 0.105 3.895 13 O -0.343 6.343 14 C 0.547 3.453 15 O -0.500 6.500 16 C -0.042 4.042 17 C -0.105 4.105 18 C -0.128 4.128 19 C -0.046 4.046 20 C 0.611 3.389 21 N -0.818 5.818 22 O -0.548 6.548 23 O -0.143 6.143 24 C -0.135 4.135 25 C 0.146 3.854 26 H 0.252 0.748 27 H 0.003 0.997 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.192 0.808 33 H 0.194 0.806 34 H 0.420 0.580 35 H 0.423 0.577 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.018 0.982 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.277 -17.287 13.460 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.243 4.243 3 Si 0.797 3.203 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.396 4.396 8 H 0.087 0.913 9 N -0.334 5.334 10 C 0.054 3.946 11 C -0.161 4.161 12 C 0.051 3.949 13 O -0.259 6.259 14 C 0.392 3.608 15 O -0.390 6.390 16 C -0.094 4.094 17 C -0.125 4.125 18 C -0.148 4.148 19 C -0.100 4.100 20 C 0.394 3.606 21 N -0.382 5.382 22 O -0.427 6.427 23 O -0.038 6.038 24 C -0.174 4.174 25 C 0.020 3.980 26 H 0.061 0.939 27 H 0.022 0.978 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.210 0.790 33 H 0.211 0.789 34 H 0.251 0.749 35 H 0.257 0.743 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.036 0.964 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.090 -17.624 13.420 22.367 hybrid contribution 0.130 1.403 -0.330 1.447 sum 3.220 -16.221 13.090 21.091 Atomic orbital electron populations 1.70160 1.06677 1.26105 1.55095 1.25818 0.96057 1.01565 1.00893 0.85264 0.78133 0.79398 0.77554 1.21237 1.21793 1.19416 1.19509 0.92985 0.85762 1.41357 0.91282 1.44381 1.35929 1.02442 1.50671 1.20594 0.88080 0.97550 0.88337 1.22206 1.02335 0.92052 0.99511 1.22822 0.98983 0.87020 0.86043 1.86685 1.76731 1.17398 1.45097 1.19547 0.74518 0.81925 0.84835 1.90931 1.42513 1.81117 1.24411 1.21045 1.09505 0.94277 0.84528 1.22334 0.99255 0.90488 1.00406 1.22291 0.99128 1.01912 0.91460 1.22695 1.07892 0.84530 0.94882 1.16573 0.77041 0.84903 0.82046 1.43616 1.64827 1.10766 1.19028 1.90924 1.57145 1.26544 1.68125 1.84109 1.63951 1.33571 1.22194 1.22314 0.97082 1.00174 0.97840 1.20962 0.98212 0.85480 0.93297 0.93891 0.97847 0.91293 0.90273 0.91239 0.90682 0.79047 0.78879 0.74884 0.74260 0.90997 0.90733 0.96430 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.97 11.19 21.65 0.24 -53.73 16 2 C -0.05 -2.60 4.92 84.86 0.42 -2.19 16 3 Si 0.97 43.68 29.59 68.60 2.03 45.71 16 4 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.27 -14.30 9.58 84.04 0.81 -13.49 16 8 H 0.07 3.60 7.89 -2.91 -0.02 3.57 16 9 N -0.61 -30.09 2.99 -699.09 -2.09 -32.18 16 10 C 0.18 8.45 5.30 86.36 0.46 8.91 16 11 C -0.12 -4.49 5.74 30.68 0.18 -4.31 16 12 C 0.11 3.61 2.42 30.62 0.07 3.69 16 13 O -0.34 -10.53 9.89 -55.92 -0.55 -11.08 16 14 C 0.55 15.55 7.93 70.16 0.56 16.11 16 15 O -0.50 -16.06 16.12 19.71 0.32 -15.74 16 16 C -0.04 -0.94 7.19 24.23 0.17 -0.77 16 17 C -0.11 -1.84 10.60 22.33 0.24 -1.60 16 18 C -0.13 -2.01 10.59 22.32 0.24 -1.78 16 19 C -0.05 -0.82 7.14 24.27 0.17 -0.64 16 20 C 0.61 10.37 8.08 86.64 0.70 11.07 16 21 N -0.82 -7.99 8.87 -175.96 -1.56 -9.55 16 22 O -0.55 -12.53 17.70 -4.06 -0.07 -12.60 16 23 O -0.14 -2.93 10.41 -7.14 -0.07 -3.01 16 24 C -0.13 -4.64 5.72 30.67 0.18 -4.47 16 25 C 0.15 6.00 6.52 86.36 0.56 6.56 16 26 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 27 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 29 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.08 2.73 7.16 -2.39 -0.02 2.71 16 32 H 0.19 2.59 8.06 -2.91 -0.02 2.56 16 33 H 0.19 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.42 3.02 8.59 -92.71 -0.80 2.23 16 35 H 0.42 2.47 8.93 -92.71 -0.83 1.65 16 36 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.07 2.65 7.93 -2.39 -0.02 2.63 16 Total: -1.00 -67.83 339.65 2.47 -65.36 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -0.51 Total: 9.73 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 4.75 Total: 17.09 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -3.41 Total: -95.46 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -0.38 Total: -42.43 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -67.83 2.47 -65.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747250505.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.085 kcal (2) G-P(sol) polarization free energy of solvation -67.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds