Wall clock time and date at job start Fri Apr 10 2020 17:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 119.99745 * 2 1 4 4 C 1.50697 * 109.47213 * 275.00368 * 3 2 1 5 5 H 1.08001 * 120.00302 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99971 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99835 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 119.99984 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.47113 * 90.00157 * 8 6 4 10 10 H 1.48500 * 109.47211 * 210.00456 * 8 6 4 11 11 H 1.48500 * 109.47341 * 330.00644 * 8 6 4 12 12 S 1.65597 * 119.99853 * 180.02562 * 2 1 3 13 13 O 1.42102 * 106.40294 * 156.45821 * 12 2 1 14 14 O 1.42096 * 106.40233 * 23.53477 * 12 2 1 15 15 N 1.65605 * 107.21742 * 269.99594 * 12 2 1 16 16 C 1.46494 * 119.99722 * 65.00207 * 15 12 2 17 17 C 1.53266 * 109.57182 * 214.99880 * 16 15 12 18 18 O 1.43095 * 108.94092 * 185.66785 * 17 16 15 19 19 C 1.42967 * 113.77014 * 57.97057 * 18 17 16 20 20 C 1.52997 * 109.46882 * 61.20565 * 19 18 17 21 21 C 1.52999 * 109.46879 * 181.20342 * 19 18 17 22 22 O 1.42958 * 109.47031 * 301.20439 * 19 18 17 23 23 C 1.43097 * 113.77145 * 58.79568 * 22 19 18 24 24 H 1.09004 * 109.46945 * 270.00091 * 1 2 3 25 25 H 1.08998 * 109.47396 * 29.99445 * 1 2 3 26 26 H 1.08990 * 109.47465 * 149.99831 * 1 2 3 27 27 H 1.08998 * 109.47432 * 35.00721 * 3 2 1 28 28 H 1.09002 * 109.46725 * 155.00175 * 3 2 1 29 29 H 0.96999 * 119.99791 * 180.02562 * 7 6 4 30 30 H 0.97000 * 119.99628 * 245.00658 * 15 12 2 31 31 H 1.08997 * 109.68514 * 335.31508 * 16 15 12 32 32 H 1.08999 * 109.55953 * 65.83339 * 17 16 15 33 33 H 1.08999 * 109.64920 * 305.55868 * 17 16 15 34 34 H 1.08998 * 109.47729 * 59.99807 * 20 19 18 35 35 H 1.09002 * 109.47504 * 180.02562 * 20 19 18 36 36 H 1.09003 * 109.47441 * 299.99612 * 20 19 18 37 37 H 1.08995 * 109.47553 * 60.00128 * 21 19 18 38 38 H 1.09007 * 109.46866 * 180.02562 * 21 19 18 39 39 H 1.09001 * 109.47462 * 299.99673 * 21 19 18 40 40 H 1.09001 * 109.55706 * 182.19084 * 23 22 19 41 41 H 1.08996 * 109.55877 * 61.86492 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3413 1.7658 -1.4154 5 1 1.9281 1.1940 -2.2331 6 6 3.0005 2.9505 -1.6664 7 7 3.1255 3.3845 -2.9015 8 14 3.7146 3.9398 -0.2520 9 1 5.1115 3.5043 0.0011 10 1 3.7016 5.3831 -0.6012 11 1 2.8984 3.7185 0.9687 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1566 -0.5450 14 8 1.4112 -2.4062 -0.5454 15 7 2.5381 -1.8593 1.5810 16 6 1.3947 -2.1788 2.4392 17 6 1.6739 -1.6966 3.8670 18 8 0.6105 -2.1312 4.7203 19 6 0.4235 -3.5485 4.7317 20 6 1.6941 -4.2264 5.2483 21 6 -0.7507 -3.9006 5.6473 22 8 0.1463 -4.0033 3.4051 23 6 1.1782 -3.6958 2.4625 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6502 2.0043 0.5895 28 1 3.1857 1.1177 0.4343 29 1 3.5896 4.2178 -3.0781 30 1 3.4388 -1.8967 1.9391 31 1 0.4999 -1.6880 2.0565 32 1 1.7305 -0.6082 3.8801 33 1 2.6172 -2.1154 4.2175 34 1 1.9054 -3.8796 6.2598 35 1 1.5517 -5.3071 5.2567 36 1 2.5306 -3.9756 4.5961 37 1 -1.6559 -3.4176 5.2794 38 1 -0.8930 -4.9813 5.6564 39 1 -0.5394 -3.5538 6.6589 40 1 0.8804 -4.0372 1.4711 41 1 2.1025 -4.1918 2.7586 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758629014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:58 Heat of formation + Delta-G solvation = -159.511971 kcal Electronic energy + Delta-G solvation = -25326.276576 eV Core-core repulsion = 21561.706411 eV Total energy + Delta-G solvation = -3764.570165 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.128 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.69008 -36.82576 -35.96033 -35.91982 -35.65518 -35.32301 -32.42132 -32.32464 -29.19450 -28.44731 -27.58137 -26.29249 -25.22127 -22.80150 -21.98069 -20.37299 -19.22059 -17.96538 -17.44204 -17.08002 -16.94697 -16.60389 -16.08759 -15.71116 -15.22799 -15.21419 -14.28247 -13.91491 -13.71501 -13.60796 -13.33706 -13.09459 -13.02783 -12.62397 -12.53734 -12.51981 -12.41126 -12.04413 -11.97178 -11.79205 -11.58991 -11.42360 -11.38327 -11.28600 -11.19648 -10.93223 -10.70853 -10.49013 -10.26491 -9.80343 -9.59543 -9.40252 -8.62547 -8.19926 -6.11128 -4.10948 1.00476 3.11923 3.25021 3.29506 3.29999 3.32181 3.52023 3.95717 4.29762 4.35248 4.40029 4.47250 4.54106 4.71341 4.83119 5.03754 5.16722 5.18910 5.23413 5.29222 5.31538 5.37552 5.41883 5.49626 5.57967 5.71333 5.83089 5.86113 5.89165 6.16302 6.41584 6.59099 6.65688 6.85850 6.94286 7.04518 7.32665 7.53950 8.45452 8.93561 9.47448 11.02413 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.023891 B = 0.004204 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.688218 B = 6659.257779 C = 7093.525654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.989 5.989 3 C 0.227 3.773 4 C -0.534 4.534 5 H 0.078 0.922 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.873 3.127 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.265 1.265 12 S 2.781 3.219 13 O -0.957 6.957 14 O -0.988 6.988 15 N -1.124 6.124 16 C 0.092 3.908 17 C 0.051 3.949 18 O -0.380 6.380 19 C 0.259 3.741 20 C -0.207 4.207 21 C -0.127 4.127 22 O -0.379 6.379 23 C 0.038 3.962 24 H 0.040 0.960 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.029 0.971 29 H 0.265 0.735 30 H 0.413 0.587 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.567 -13.447 18.760 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.831 5.831 3 C 0.104 3.896 4 C -0.573 4.573 5 H 0.096 0.904 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.190 1.190 12 S 2.788 3.212 13 O -0.941 6.941 14 O -0.971 6.971 15 N -0.884 5.884 16 C -0.017 4.017 17 C -0.027 4.027 18 O -0.300 6.300 19 C 0.182 3.818 20 C -0.265 4.265 21 C -0.184 4.184 22 O -0.299 6.299 23 C -0.040 4.040 24 H 0.059 0.941 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.246 0.754 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.133 0.867 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.716 -13.760 17.898 23.063 hybrid contribution 1.241 0.906 0.904 1.783 sum -3.475 -12.854 18.802 23.039 Atomic orbital electron populations 1.21459 0.79551 1.04221 1.00316 1.57352 1.14556 1.22492 1.88706 1.19451 0.90789 0.80659 0.98701 1.21373 1.36970 1.07141 0.91827 0.90389 1.24876 0.95357 0.97175 0.95564 1.69895 1.42412 1.22018 1.18884 0.86912 0.80345 0.79781 0.83007 1.19810 1.20911 1.18952 1.02087 0.73518 0.73028 0.72595 1.93665 1.40595 1.84742 1.75103 1.93548 1.67411 1.59804 1.76339 1.56350 1.13875 1.85751 1.32405 1.21866 0.90121 0.96930 0.92766 1.22986 0.90298 1.01638 0.87742 1.88184 1.53739 1.23076 1.64961 1.22846 0.95397 0.79557 0.83968 1.22854 0.98407 1.02437 1.02777 1.21599 0.96404 1.02541 0.97897 1.88189 1.44703 1.78403 1.18588 1.23324 0.91821 0.94198 0.94630 0.94111 0.89895 0.91095 0.94765 0.95325 0.92474 0.75352 0.87864 0.87294 0.91919 0.90442 0.90391 0.91567 0.90703 0.90232 0.90286 0.86714 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.49 10.10 59.85 0.60 2.10 16 2 N -0.99 -19.34 3.23 -123.06 -0.40 -19.73 16 3 C 0.23 5.21 4.15 -5.19 -0.02 5.19 16 4 C -0.53 -15.07 9.94 -34.44 -0.34 -15.41 16 5 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 7 N -0.89 -27.34 13.96 55.43 0.77 -26.56 16 8 Si 0.87 20.78 27.47 -169.99 -4.67 16.11 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 12 S 2.78 51.51 6.01 -107.50 -0.65 50.86 16 13 O -0.96 -21.69 17.11 -57.17 -0.98 -22.67 16 14 O -0.99 -19.41 16.19 -57.17 -0.93 -20.33 16 15 N -1.12 -14.68 5.54 -4.66 -0.03 -14.71 16 16 C 0.09 1.11 3.09 -67.66 -0.21 0.90 16 17 C 0.05 0.53 6.13 37.29 0.23 0.76 16 18 O -0.38 -4.33 10.35 -59.04 -0.61 -4.94 16 19 C 0.26 2.61 1.50 -26.73 -0.04 2.57 16 20 C -0.21 -1.63 8.11 37.16 0.30 -1.32 16 21 C -0.13 -1.00 9.21 37.16 0.34 -0.66 16 22 O -0.38 -4.58 10.35 -59.04 -0.61 -5.19 16 23 C 0.04 0.45 6.21 37.29 0.23 0.68 16 24 H 0.04 0.54 7.42 -51.93 -0.39 0.16 16 25 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 26 H 0.07 1.12 7.02 -51.93 -0.36 0.76 16 27 H 0.03 0.75 7.17 -51.93 -0.37 0.37 16 28 H 0.03 0.65 7.04 -51.93 -0.37 0.28 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 30 H 0.41 4.39 8.84 -34.47 -0.30 4.08 16 31 H 0.10 1.32 6.63 -51.93 -0.34 0.98 16 32 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.54 6.53 -51.93 -0.34 0.20 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.52 5.12 -51.93 -0.27 0.25 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.11 1.47 7.83 -51.93 -0.41 1.07 16 41 H 0.06 0.61 6.53 -51.93 -0.34 0.27 16 LS Contribution 338.28 15.07 5.10 5.10 Total: -1.00 -35.07 338.28 -8.03 -43.10 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.03 Total: 2.13 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 1.00 Total: -3.18 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.35 Total: -61.00 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -3.13 Total: -53.13 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Atomic # 16 Polarization: 51.51 SS G_CDS: -0.65 Total: 50.86 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.07 -8.03 -43.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758629014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.411 kcal (2) G-P(sol) polarization free energy of solvation -35.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds