Wall clock time and date at job start Fri Apr 10 2020 17:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 119.99745 * 2 1 4 4 C 1.50697 * 109.47213 * 275.00368 * 3 2 1 5 5 H 1.08001 * 120.00302 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99971 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99835 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 119.99984 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.47113 * 90.00157 * 8 6 4 10 10 H 1.48500 * 109.47211 * 210.00456 * 8 6 4 11 11 H 1.48500 * 109.47341 * 330.00644 * 8 6 4 12 12 S 1.65597 * 119.99853 * 180.02562 * 2 1 3 13 13 O 1.42102 * 106.40294 * 156.45821 * 12 2 1 14 14 O 1.42096 * 106.40233 * 23.53477 * 12 2 1 15 15 N 1.65605 * 107.21742 * 269.99594 * 12 2 1 16 16 C 1.46494 * 119.99722 * 65.00207 * 15 12 2 17 17 C 1.53266 * 109.57182 * 214.99880 * 16 15 12 18 18 O 1.43095 * 108.94092 * 185.66785 * 17 16 15 19 19 C 1.42967 * 113.77014 * 57.97057 * 18 17 16 20 20 C 1.52997 * 109.46882 * 61.20565 * 19 18 17 21 21 C 1.52999 * 109.46879 * 181.20342 * 19 18 17 22 22 O 1.42958 * 109.47031 * 301.20439 * 19 18 17 23 23 C 1.43097 * 113.77145 * 58.79568 * 22 19 18 24 24 H 1.09004 * 109.46945 * 270.00091 * 1 2 3 25 25 H 1.08998 * 109.47396 * 29.99445 * 1 2 3 26 26 H 1.08990 * 109.47465 * 149.99831 * 1 2 3 27 27 H 1.08998 * 109.47432 * 35.00721 * 3 2 1 28 28 H 1.09002 * 109.46725 * 155.00175 * 3 2 1 29 29 H 0.96999 * 119.99791 * 180.02562 * 7 6 4 30 30 H 0.97000 * 119.99628 * 245.00658 * 15 12 2 31 31 H 1.08997 * 109.68514 * 335.31508 * 16 15 12 32 32 H 1.08999 * 109.55953 * 65.83339 * 17 16 15 33 33 H 1.08999 * 109.64920 * 305.55868 * 17 16 15 34 34 H 1.08998 * 109.47729 * 59.99807 * 20 19 18 35 35 H 1.09002 * 109.47504 * 180.02562 * 20 19 18 36 36 H 1.09003 * 109.47441 * 299.99612 * 20 19 18 37 37 H 1.08995 * 109.47553 * 60.00128 * 21 19 18 38 38 H 1.09007 * 109.46866 * 180.02562 * 21 19 18 39 39 H 1.09001 * 109.47462 * 299.99673 * 21 19 18 40 40 H 1.09001 * 109.55706 * 182.19084 * 23 22 19 41 41 H 1.08996 * 109.55877 * 61.86492 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3413 1.7658 -1.4154 5 1 1.9281 1.1940 -2.2331 6 6 3.0005 2.9505 -1.6664 7 7 3.1255 3.3845 -2.9015 8 14 3.7146 3.9398 -0.2520 9 1 5.1115 3.5043 0.0011 10 1 3.7016 5.3831 -0.6012 11 1 2.8984 3.7185 0.9687 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1566 -0.5450 14 8 1.4112 -2.4062 -0.5454 15 7 2.5381 -1.8593 1.5810 16 6 1.3947 -2.1788 2.4392 17 6 1.6739 -1.6966 3.8670 18 8 0.6105 -2.1312 4.7203 19 6 0.4235 -3.5485 4.7317 20 6 1.6941 -4.2264 5.2483 21 6 -0.7507 -3.9006 5.6473 22 8 0.1463 -4.0033 3.4051 23 6 1.1782 -3.6958 2.4625 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6502 2.0043 0.5895 28 1 3.1857 1.1177 0.4343 29 1 3.5896 4.2178 -3.0781 30 1 3.4388 -1.8967 1.9391 31 1 0.4999 -1.6880 2.0565 32 1 1.7305 -0.6082 3.8801 33 1 2.6172 -2.1154 4.2175 34 1 1.9054 -3.8796 6.2598 35 1 1.5517 -5.3071 5.2567 36 1 2.5306 -3.9756 4.5961 37 1 -1.6559 -3.4176 5.2794 38 1 -0.8930 -4.9813 5.6564 39 1 -0.5394 -3.5538 6.6589 40 1 0.8804 -4.0372 1.4711 41 1 2.1025 -4.1918 2.7586 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758629014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:56 Heat of formation + Delta-G solvation = -188.932929 kcal Electronic energy + Delta-G solvation = -25327.552364 eV Core-core repulsion = 21561.706411 eV Total energy + Delta-G solvation = -3765.845953 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.128 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.49958 -38.39598 -37.36633 -36.94271 -36.87700 -36.76958 -34.51555 -33.08483 -30.30779 -30.06836 -28.23130 -27.13314 -26.82838 -23.87547 -23.61740 -21.24846 -20.56110 -19.21032 -18.90122 -18.55800 -18.32024 -17.92268 -17.13804 -16.67552 -16.48989 -16.12114 -16.05552 -15.41647 -14.75747 -14.68269 -14.49450 -14.47831 -14.16514 -14.05555 -13.61377 -13.44543 -13.28263 -13.19612 -13.14636 -13.07065 -13.04947 -13.00541 -12.69839 -12.44284 -12.34862 -12.22618 -12.08151 -12.00298 -11.75788 -11.69675 -10.78230 -10.59054 -10.40725 -9.82760 -8.28857 -6.35384 -0.46587 1.37977 1.41911 1.50433 1.86016 2.36061 2.46408 2.53338 2.74104 3.05023 3.33504 3.46479 3.58036 3.74827 3.84712 3.91154 3.95831 4.24254 4.30464 4.50300 4.59260 4.62330 4.68749 4.69734 4.74824 4.76347 4.84454 4.85748 4.88026 5.04111 5.16824 5.24576 5.31562 5.47066 5.64395 5.80379 6.01752 6.17123 6.29963 6.68053 7.27800 8.88805 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.023891 B = 0.004204 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.688218 B = 6659.257779 C = 7093.525654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.998 5.998 3 C 0.234 3.766 4 C -0.547 4.547 5 H 0.026 0.974 6 C 0.005 3.995 7 N -0.950 5.950 8 Si 0.946 3.054 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.226 1.226 12 S 2.797 3.203 13 O -1.003 7.003 14 O -1.004 7.004 15 N -1.101 6.101 16 C 0.088 3.912 17 C 0.052 3.948 18 O -0.391 6.391 19 C 0.245 3.755 20 C -0.204 4.204 21 C -0.128 4.128 22 O -0.395 6.395 23 C 0.037 3.963 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.268 0.732 30 H 0.428 0.572 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.295 -13.640 22.590 26.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.839 5.839 3 C 0.109 3.891 4 C -0.586 4.586 5 H 0.045 0.955 6 C -0.192 4.192 7 N -0.590 5.590 8 Si 0.767 3.233 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.149 1.149 12 S 2.805 3.195 13 O -0.987 6.987 14 O -0.987 6.987 15 N -0.866 5.866 16 C -0.020 4.020 17 C -0.026 4.026 18 O -0.311 6.311 19 C 0.169 3.831 20 C -0.261 4.261 21 C -0.185 4.185 22 O -0.315 6.315 23 C -0.041 4.041 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.265 0.735 31 H 0.113 0.887 32 H 0.134 0.866 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.469 -13.984 21.743 26.235 hybrid contribution 1.060 0.836 -0.327 1.389 sum -3.408 -13.147 21.416 25.360 Atomic orbital electron populations 1.21645 0.77961 1.03757 1.02649 1.57295 1.15725 1.21582 1.89306 1.19249 0.92088 0.82347 0.95398 1.21729 1.36440 1.06929 0.93483 0.95518 1.25978 0.95773 0.98627 0.98848 1.70079 1.44026 1.22928 1.21927 0.85754 0.79885 0.77496 0.80128 1.19244 1.20655 1.14894 1.01319 0.72196 0.72598 0.73405 1.93600 1.42744 1.85325 1.77048 1.93525 1.67634 1.60062 1.77510 1.55696 1.15287 1.84962 1.30692 1.22019 0.89119 0.97295 0.93605 1.23042 0.91099 1.02216 0.86223 1.88180 1.54192 1.23948 1.64824 1.23293 0.97307 0.79201 0.83315 1.22836 0.97092 1.02815 1.03390 1.21678 0.95242 1.03347 0.98209 1.88179 1.45100 1.78583 1.19620 1.23269 0.92665 0.94026 0.94176 0.90274 0.90983 0.91052 0.92422 0.94311 0.92344 0.73495 0.88670 0.86573 0.89726 0.89083 0.89528 0.91501 0.91736 0.89006 0.88677 0.88445 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.72 10.10 127.77 1.29 4.01 16 2 N -1.00 -38.24 3.23 -543.24 -1.75 -39.99 16 3 C 0.23 10.40 4.15 85.63 0.36 10.76 16 4 C -0.55 -31.51 9.94 25.60 0.25 -31.26 16 5 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 6 C 0.01 0.31 5.47 84.66 0.46 0.78 16 7 N -0.95 -59.98 13.96 21.45 0.30 -59.69 16 8 Si 0.95 41.92 27.47 68.60 1.88 43.80 16 9 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.23 -8.58 6.54 99.48 0.65 -7.93 16 12 S 2.80 102.38 6.01 -56.49 -0.34 102.04 16 13 O -1.00 -45.77 17.11 -128.00 -2.19 -47.96 16 14 O -1.00 -39.54 16.19 -128.00 -2.07 -41.62 16 15 N -1.10 -26.50 5.54 -168.67 -0.93 -27.44 16 16 C 0.09 1.92 3.09 45.17 0.14 2.06 16 17 C 0.05 0.91 6.13 72.07 0.44 1.35 16 18 O -0.39 -7.78 10.35 -126.22 -1.31 -9.09 16 19 C 0.24 4.29 1.50 30.59 0.05 4.34 16 20 C -0.20 -2.52 8.11 71.98 0.58 -1.94 16 21 C -0.13 -1.71 9.21 71.98 0.66 -1.04 16 22 O -0.39 -8.81 10.35 -126.22 -1.31 -10.12 16 23 C 0.04 0.80 6.21 72.07 0.45 1.25 16 24 H 0.08 1.92 7.42 -2.38 -0.02 1.90 16 25 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 26 H 0.07 2.25 7.02 -2.39 -0.02 2.23 16 27 H 0.06 2.32 7.17 -2.39 -0.02 2.30 16 28 H 0.04 1.67 7.04 -2.39 -0.02 1.65 16 29 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 30 H 0.43 7.96 8.84 -96.74 -0.86 7.10 16 31 H 0.10 2.24 6.63 -2.39 -0.02 2.22 16 32 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 1.11 6.53 -2.39 -0.02 1.10 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.81 5.12 -2.39 -0.01 0.80 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.10 2.44 7.83 -2.39 -0.02 2.42 16 41 H 0.08 1.40 6.53 -2.39 -0.02 1.39 16 Total: -1.00 -78.59 338.28 -2.90 -81.49 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.13 Total: 18.27 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 4.68 Total: -9.70 kcal Atomic # 7 Polarization: -124.73 SS G_CDS: -2.39 Total: -127.12 kcal Atomic # 8 Polarization: -101.91 SS G_CDS: -6.88 Total: -108.79 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.88 Total: 43.80 kcal Atomic # 16 Polarization: 102.38 SS G_CDS: -0.34 Total: 102.04 kcal Total: -78.59 -2.90 -81.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758629014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.439 kcal (2) G-P(sol) polarization free energy of solvation -78.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds