Wall clock time and date at job start Fri Apr 10 2020 17:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46490 * 109.47515 * 2 1 4 4 C 1.46501 * 120.00296 * 270.00279 * 3 2 1 5 5 C 1.50705 * 109.47019 * 269.99862 * 4 3 2 6 6 H 1.07997 * 119.99476 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99820 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00455 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99565 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47473 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47134 * 120.00463 * 9 7 5 12 12 H 1.48505 * 109.47093 * 239.99786 * 9 7 5 13 13 C 1.34779 * 120.00055 * 89.99752 * 3 2 1 14 14 O 1.21288 * 119.99989 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00119 * 0.02562 * 13 3 2 16 16 O 1.45193 * 109.47069 * 180.02562 * 15 13 3 17 17 C 1.34670 * 116.99834 * 180.02562 * 16 15 13 18 18 O 1.21426 * 120.00155 * 359.97438 * 17 16 15 19 19 C 1.48061 * 119.99994 * 179.97438 * 17 16 15 20 20 C 1.40011 * 120.89853 * 359.97438 * 19 17 16 21 21 C 1.37978 * 119.12957 * 180.02562 * 20 19 17 22 22 N 1.31905 * 120.98322 * 0.02562 * 21 20 19 23 23 C 1.32177 * 121.98182 * 359.97438 * 22 21 20 24 24 O 1.35688 * 119.61624 * 180.28333 * 23 22 21 25 25 C 1.38895 * 120.75723 * 359.97438 * 23 22 21 26 26 H 1.08998 * 109.47192 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46664 * 300.00107 * 1 2 3 28 28 H 1.08999 * 109.46699 * 60.00124 * 1 2 3 29 29 H 1.08998 * 109.47102 * 239.99728 * 2 1 3 30 30 H 1.09004 * 109.47134 * 120.00036 * 2 1 3 31 31 H 1.08998 * 109.46912 * 29.99356 * 4 3 2 32 32 H 1.09001 * 109.47483 * 149.99551 * 4 3 2 33 33 H 0.96996 * 120.00468 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.46926 * 59.99499 * 15 13 3 35 35 H 1.08996 * 109.46712 * 299.99966 * 15 13 3 36 36 H 1.08001 * 120.43284 * 359.97438 * 20 19 17 37 37 H 1.07997 * 119.50761 * 179.97438 * 21 20 19 38 38 H 0.96704 * 113.99257 * 269.72070 * 24 23 22 39 39 H 1.07998 * 120.52608 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0958 7 6 4.1492 2.3895 -2.8779 8 7 3.3490 3.1249 -3.6185 9 14 5.9137 2.0965 -3.4168 10 1 6.6016 1.2423 -2.4157 11 1 5.9216 1.4170 -4.7372 12 1 6.6206 3.3979 -3.5256 13 6 2.2431 2.0165 1.1672 14 8 2.6470 3.1601 1.1672 15 6 1.9924 1.3059 2.4724 16 8 2.3062 2.1957 3.5759 17 6 2.1354 1.7102 4.8204 18 8 1.7350 0.5750 4.9795 19 6 2.4360 2.5606 5.9945 20 6 2.8992 3.8719 5.8329 21 6 3.1684 4.6320 6.9525 22 7 2.9961 4.1405 8.1644 23 6 2.5610 2.9086 8.3649 24 8 2.3955 2.4539 9.6326 25 6 2.2652 2.0764 7.2929 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.5818 1.6877 -2.0283 32 1 2.0957 3.1410 -1.1384 33 1 3.6751 3.5154 -4.4444 34 1 2.6228 0.4186 2.5299 35 1 0.9445 1.0115 2.5302 36 1 3.0446 4.2828 4.8447 37 1 3.5264 5.6441 6.8349 38 1 3.1795 2.0246 10.0018 39 1 1.9096 1.0707 7.4610 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762849691.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:18 Heat of formation + Delta-G solvation = -114.511094 kcal Electronic energy + Delta-G solvation = -24515.322232 eV Core-core repulsion = 20617.259500 eV Total energy + Delta-G solvation = -3898.062732 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.125 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.21724 -40.25609 -39.00986 -37.44480 -36.59582 -35.38935 -33.23097 -32.88378 -30.73457 -30.24559 -29.31603 -26.81893 -25.29936 -23.81350 -23.14624 -22.70662 -21.53414 -19.43518 -18.74114 -18.00456 -17.18682 -16.86002 -16.75838 -16.42972 -16.22922 -16.02947 -15.61484 -15.26956 -14.65757 -14.55000 -14.25760 -13.69601 -13.54553 -13.31229 -13.06094 -12.75481 -12.45442 -12.22968 -12.14711 -12.12151 -11.70395 -11.30062 -11.08378 -11.01777 -10.93644 -10.71388 -10.60763 -10.42300 -10.19939 -9.96176 -9.69991 -9.40143 -9.09948 -8.49937 -7.82905 -6.10805 -4.15893 0.13099 0.54873 2.10471 2.20060 3.08645 3.15210 3.26110 3.34166 3.37311 3.38082 3.70621 4.20039 4.34242 4.40882 4.51347 4.55139 4.75510 4.93898 5.04761 5.09530 5.20683 5.24083 5.27997 5.33451 5.52014 5.63051 5.66730 5.92684 5.98768 6.07905 6.13560 6.38960 6.92236 7.01171 7.32946 7.36641 7.41605 7.44000 7.85015 8.14559 8.21439 8.76666 8.92314 9.49465 10.97420 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.019489 B = 0.002896 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.395094 B = 9665.327895 C =10541.177539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.050 3.950 16 O -0.319 6.319 17 C 0.509 3.491 18 O -0.497 6.497 19 C -0.058 4.058 20 C -0.122 4.122 21 C 0.119 3.881 22 N -0.482 5.482 23 C 0.303 3.697 24 O -0.477 6.477 25 C -0.125 4.125 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.045 0.955 33 H 0.264 0.736 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.163 0.837 37 H 0.174 0.826 38 H 0.403 0.597 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.116 -4.389 19.407 20.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.324 5.324 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.292 3.708 14 O -0.394 6.394 15 C -0.027 4.027 16 O -0.234 6.234 17 C 0.352 3.648 18 O -0.386 6.386 19 C -0.067 4.067 20 C -0.142 4.142 21 C -0.037 4.037 22 N -0.202 5.202 23 C 0.124 3.876 24 O -0.284 6.284 25 C -0.146 4.146 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.181 0.819 37 H 0.191 0.809 38 H 0.261 0.739 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.426 -3.331 19.903 20.468 hybrid contribution 1.116 -1.134 -1.058 1.911 sum -2.311 -4.465 18.844 19.504 Atomic orbital electron populations 1.22236 0.96461 1.01766 1.02446 1.21526 0.93802 0.83895 1.03097 1.48213 1.63662 1.13431 1.07101 1.19356 0.96556 0.93722 0.77484 1.21451 0.96806 1.32128 1.06364 0.92333 1.24932 0.97945 0.94837 0.96337 1.69932 1.35640 1.33351 1.14323 0.86429 0.84486 0.78101 0.78324 1.19793 1.20935 1.20820 1.19645 0.79831 0.87158 0.84208 1.90719 1.44576 1.17432 1.86705 1.23074 1.03015 0.92585 0.84055 1.86576 1.78284 1.44702 1.13801 1.20995 0.74810 0.85426 0.83575 1.90843 1.41923 1.18970 1.86830 1.19345 1.01864 0.94449 0.91049 1.22734 0.95844 0.93007 1.02614 1.22652 0.95297 1.00336 0.85432 1.67065 1.11817 1.14187 1.27103 1.18922 0.95473 0.88213 0.84986 1.84820 1.40613 1.77537 1.25471 1.22240 0.99769 1.02027 0.90570 0.91835 0.93138 0.91733 0.89322 0.91745 0.94562 0.93649 0.92675 0.88327 0.88412 0.81907 0.80928 0.73935 0.82636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.16 0.38 -1.77 16 2 C 0.10 1.51 5.93 -4.04 -0.02 1.49 16 3 N -0.59 -11.88 2.46 -175.06 -0.43 -12.31 16 4 C 0.25 6.21 5.16 -5.19 -0.03 6.18 16 5 C -0.53 -14.53 9.39 -34.44 -0.32 -14.86 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.94 13.29 55.43 0.74 -25.21 16 9 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.51 10.20 7.75 -10.98 -0.09 10.12 16 14 O -0.52 -12.70 16.08 -14.11 -0.23 -12.93 16 15 C 0.05 0.76 4.50 36.01 0.16 0.92 16 16 O -0.32 -4.93 9.11 -47.09 -0.43 -5.36 16 17 C 0.51 6.91 7.92 34.76 0.28 7.18 16 18 O -0.50 -7.33 16.23 -19.21 -0.31 -7.64 16 19 C -0.06 -0.66 5.91 -104.69 -0.62 -1.27 16 20 C -0.12 -1.22 9.70 -39.01 -0.38 -1.60 16 21 C 0.12 1.07 11.17 -17.62 -0.20 0.87 16 22 N -0.48 -5.10 10.36 -13.38 -0.14 -5.24 16 23 C 0.30 3.01 7.74 -17.16 -0.13 2.88 16 24 O -0.48 -3.91 13.56 -18.77 -0.25 -4.16 16 25 C -0.12 -1.25 9.61 -38.82 -0.37 -1.62 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.61 7.22 -51.93 -0.38 0.23 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 31 H 0.04 0.91 8.07 -51.93 -0.42 0.50 16 32 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.10 1.34 7.40 -51.93 -0.38 0.95 16 35 H 0.10 1.28 7.18 -51.93 -0.37 0.91 16 36 H 0.16 1.59 7.71 -52.49 -0.40 1.19 16 37 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.40 1.19 9.06 45.56 0.41 1.60 16 39 H 0.16 1.41 7.74 -52.49 -0.41 1.00 16 LS Contribution 349.19 15.07 5.26 5.26 Total: -1.00 -35.39 349.19 -6.15 -41.54 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -3.90 Total: -0.46 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -1.44 Total: 10.14 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.17 Total: -42.76 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -1.22 Total: -30.09 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.39 -6.15 -41.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762849691.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.974 kcal (2) G-P(sol) polarization free energy of solvation -35.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds