Wall clock time and date at job start Fri Apr 10 2020 17:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47102 * 2 1 4 4 C 1.50701 * 109.47030 * 119.99734 * 2 1 3 5 5 C 1.38011 * 119.51113 * 274.99796 * 4 2 1 6 6 C 1.39977 * 119.12661 * 180.02562 * 5 4 2 7 7 C 1.48061 * 120.89744 * 180.02562 * 6 5 4 8 8 O 1.21427 * 119.99725 * 359.97438 * 7 6 5 9 9 O 1.34671 * 119.99727 * 179.97438 * 7 6 5 10 10 C 1.45203 * 116.99648 * 179.97438 * 9 7 6 11 11 C 1.50692 * 109.46913 * 180.02562 * 10 9 7 12 12 O 1.21290 * 120.00235 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99949 * 180.02562 * 11 10 9 14 14 C 1.37104 * 119.99883 * 179.97438 * 13 11 10 15 15 H 1.07992 * 119.99850 * 0.02562 * 14 13 11 16 16 C 1.38944 * 119.99559 * 180.02562 * 14 13 11 17 17 N 1.31412 * 120.00426 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00022 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46843 * 89.99765 * 18 16 14 20 20 H 1.48496 * 109.47454 * 209.99964 * 18 16 14 21 21 H 1.48499 * 109.46818 * 330.00139 * 18 16 14 22 22 C 1.39657 * 118.20467 * 0.02562 * 6 5 4 23 23 C 1.38854 * 118.94338 * 0.27282 * 22 6 5 24 24 O 1.35682 * 119.61902 * 179.70066 * 23 22 6 25 25 N 1.31883 * 119.50839 * 95.02279 * 4 2 1 26 26 H 1.09008 * 109.47279 * 300.00331 * 1 2 3 27 27 H 1.09003 * 109.46806 * 59.99935 * 1 2 3 28 28 H 1.09000 * 109.47282 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47403 * 239.99903 * 2 1 3 30 30 H 1.08993 * 109.47316 * 299.99719 * 3 2 1 31 31 H 1.09002 * 109.46805 * 60.00154 * 3 2 1 32 32 H 1.09003 * 109.46851 * 179.97438 * 3 2 1 33 33 H 1.07997 * 120.44252 * 0.02562 * 5 4 2 34 34 H 1.08997 * 109.47564 * 300.00343 * 10 9 7 35 35 H 1.09002 * 109.47114 * 60.00009 * 10 9 7 36 36 H 0.97001 * 119.99768 * 0.02562 * 13 11 10 37 37 H 0.97001 * 120.00463 * 180.02562 * 17 16 14 38 38 H 1.08002 * 120.52494 * 179.97438 * 22 6 5 39 39 H 0.96698 * 114.00037 * 90.00237 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1602 -0.0120 2.4140 6 6 2.6281 -0.6797 3.5519 7 6 2.7799 0.0311 4.8418 8 8 2.4975 1.2094 4.9226 9 8 3.2312 -0.6291 5.9254 10 6 3.3555 0.1313 7.1561 11 6 3.8714 -0.7663 8.2511 12 8 4.1112 -1.9320 8.0172 13 7 4.0663 -0.2738 9.4905 14 6 4.5353 -1.0906 10.4868 15 1 4.7488 -2.1284 10.2784 16 6 4.7357 -0.5828 11.7645 17 7 4.4754 0.6800 12.0182 18 14 5.3753 -1.6954 13.1220 19 1 6.8595 -1.6507 13.1405 20 1 4.8497 -1.2316 14.4311 21 1 4.9251 -3.0885 12.8734 22 6 2.9478 -2.0343 3.4376 23 6 2.7954 -2.6592 2.2070 24 8 3.1078 -3.9734 2.0790 25 7 2.3436 -1.9900 1.1603 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.9028 1.0357 2.4617 34 1 4.0516 0.9563 7.0049 35 1 2.3798 0.5264 7.4392 36 1 3.8742 0.6584 9.6776 37 1 4.6156 1.0346 12.9101 38 1 3.3124 -2.5859 4.2916 39 1 2.3692 -4.5722 2.2551 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775056097.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:02 Heat of formation + Delta-G solvation = -131.682173 kcal Electronic energy + Delta-G solvation = -24249.344692 eV Core-core repulsion = 20350.537367 eV Total energy + Delta-G solvation = -3898.807326 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.20799 -40.08716 -38.21295 -37.78802 -36.25771 -35.39734 -34.05455 -33.00282 -31.42917 -29.82855 -28.60192 -27.53398 -25.43587 -24.58947 -24.15512 -21.83002 -20.50679 -19.66625 -18.74099 -18.15560 -17.67702 -17.38976 -16.50076 -16.39896 -16.02305 -15.74939 -15.30955 -14.82861 -14.69004 -14.53026 -14.18784 -14.01122 -13.82016 -13.12716 -12.93702 -12.77635 -12.40958 -12.31756 -12.18866 -12.03395 -11.76923 -11.65788 -11.52030 -11.22298 -11.16777 -10.86334 -10.55630 -10.47079 -10.33610 -10.22033 -9.79363 -9.64845 -9.13624 -8.58964 -8.12946 -6.54017 -3.96298 0.27861 0.65133 2.35812 2.41608 3.10438 3.14285 3.21275 3.27068 3.41490 3.68052 4.00461 4.05858 4.33450 4.58899 4.62943 4.66507 4.78723 4.89993 4.93421 5.06037 5.10452 5.27718 5.29292 5.31202 5.47423 5.48987 5.53128 5.60731 5.66818 5.80206 5.87943 5.94260 5.98182 6.09500 6.38913 7.19523 7.44062 7.55154 7.61428 7.89599 8.43255 9.02686 9.34157 9.83548 10.63083 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.026831 B = 0.002562 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.315461 B =10928.319193 C =11800.544580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.045 4.045 3 C -0.152 4.152 4 C 0.152 3.848 5 C -0.121 4.121 6 C -0.053 4.053 7 C 0.506 3.494 8 O -0.499 6.499 9 O -0.317 6.317 10 C 0.061 3.939 11 C 0.437 3.563 12 O -0.576 6.576 13 N -0.551 5.551 14 C -0.303 4.303 15 H 0.107 0.893 16 C 0.025 3.975 17 N -0.896 5.896 18 Si 0.934 3.066 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.268 1.268 22 C -0.131 4.131 23 C 0.309 3.691 24 O -0.476 6.476 25 N -0.482 5.482 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.156 0.844 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.395 0.605 37 H 0.274 0.726 38 H 0.164 0.836 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.712 0.744 -21.109 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.064 4.064 3 C -0.210 4.210 4 C 0.014 3.986 5 C -0.141 4.141 6 C -0.062 4.062 7 C 0.349 3.651 8 O -0.387 6.387 9 O -0.231 6.231 10 C -0.016 4.016 11 C 0.222 3.778 12 O -0.460 6.460 13 N -0.188 5.188 14 C -0.432 4.432 15 H 0.124 0.876 16 C -0.177 4.177 17 N -0.537 5.537 18 Si 0.761 3.239 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.193 1.193 22 C -0.152 4.152 23 C 0.130 3.870 24 O -0.283 6.283 25 N -0.202 5.202 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.173 0.827 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.229 0.771 37 H 0.084 0.916 38 H 0.182 0.818 39 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -7.119 0.120 -21.875 23.004 hybrid contribution -0.075 0.389 1.899 1.940 sum -7.194 0.509 -19.976 21.238 Atomic orbital electron populations 1.21832 0.93259 1.02475 1.02507 1.20096 0.96436 0.95508 0.94353 1.21981 1.01665 0.94518 1.02798 1.20890 0.94821 0.88224 0.94687 1.22134 0.98298 1.02344 0.91284 1.19384 1.01435 0.93650 0.91708 1.20988 0.74413 0.85180 0.84535 1.90830 1.46403 1.16177 1.85326 1.86579 1.75732 1.42568 1.18178 1.22847 1.03004 0.94287 0.81505 1.19254 0.86359 0.88638 0.83554 1.90565 1.56263 1.17305 1.81842 1.41700 1.57066 1.13057 1.06978 1.19727 1.40365 0.95278 0.87825 0.87567 1.25321 0.97270 0.96493 0.98634 1.69610 1.47880 1.13105 1.23091 0.85791 0.78932 0.79912 0.79287 1.20215 1.20780 1.19250 1.22646 0.98829 0.94710 0.99053 1.18965 0.94323 0.86256 0.87437 1.84820 1.39084 1.11985 1.92402 1.66809 1.10791 1.09698 1.32859 0.92203 0.91567 0.92211 0.88794 0.91436 0.91742 0.92092 0.82688 0.89208 0.89206 0.77123 0.91568 0.81846 0.73895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.17 37.16 0.34 -0.60 16 2 C -0.04 -0.35 3.23 -91.77 -0.30 -0.64 16 3 C -0.15 -0.99 8.62 37.16 0.32 -0.67 16 4 C 0.15 1.60 5.79 -82.65 -0.48 1.12 16 5 C -0.12 -1.36 8.74 -39.01 -0.34 -1.70 16 6 C -0.05 -0.70 5.91 -104.69 -0.62 -1.32 16 7 C 0.51 8.00 7.92 34.76 0.28 8.28 16 8 O -0.50 -8.39 16.23 -19.21 -0.31 -8.71 16 9 O -0.32 -5.75 9.11 -47.09 -0.43 -6.17 16 10 C 0.06 1.12 5.95 36.00 0.21 1.34 16 11 C 0.44 10.30 7.86 -10.99 -0.09 10.22 16 12 O -0.58 -15.64 16.08 -14.11 -0.23 -15.87 16 13 N -0.55 -13.67 5.29 -10.97 -0.06 -13.73 16 14 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 15 H 0.11 3.02 7.16 -52.49 -0.38 2.64 16 16 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 17 N -0.90 -23.75 13.05 55.50 0.72 -23.03 16 18 Si 0.93 20.47 29.55 -169.99 -5.02 15.45 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 C -0.13 -1.67 9.64 -38.82 -0.37 -2.05 16 23 C 0.31 3.73 7.74 -17.17 -0.13 3.59 16 24 O -0.48 -5.00 13.56 -18.75 -0.25 -5.26 16 25 N -0.48 -5.80 10.27 -9.60 -0.10 -5.90 16 26 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.41 6.48 -51.93 -0.34 0.08 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.16 1.55 5.98 -52.49 -0.31 1.24 16 34 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 35 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.40 9.27 7.90 -40.82 -0.32 8.95 16 37 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 38 H 0.16 2.15 7.71 -52.49 -0.40 1.74 16 39 H 0.40 2.15 9.06 45.56 0.41 2.57 16 LS Contribution 347.92 15.07 5.24 5.24 Total: -1.00 -33.23 347.92 -5.71 -38.93 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -3.86 Total: 9.28 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -1.42 Total: 9.76 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.57 Total: -42.65 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -1.22 Total: -36.01 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.23 -5.71 -38.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775056097.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.748 kcal (2) G-P(sol) polarization free energy of solvation -33.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds