Wall clock time and date at job start Fri Apr 10 2020 17:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47393 * 2 1 4 4 C 1.50701 * 109.47119 * 119.99803 * 2 1 3 5 5 H 1.08007 * 120.00097 * 119.99762 * 4 2 1 6 6 C 1.37881 * 119.99952 * 300.00414 * 4 2 1 7 7 N 1.31516 * 119.99676 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99979 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.46911 * 90.00147 * 8 6 4 10 10 H 1.48501 * 109.47236 * 210.00094 * 8 6 4 11 11 H 1.48495 * 109.47048 * 330.00297 * 8 6 4 12 12 N 1.46502 * 109.47542 * 239.99737 * 2 1 3 13 13 C 1.34773 * 119.99471 * 85.00134 * 12 2 1 14 14 O 1.21277 * 120.00494 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99719 * 180.02562 * 13 12 2 16 16 H 1.09007 * 110.41201 * 320.83802 * 15 13 12 17 17 C 1.55133 * 110.34707 * 83.28182 * 15 13 12 18 18 C 1.55154 * 101.48505 * 156.05899 * 17 15 13 19 19 C 1.54317 * 102.94548 * 324.33356 * 18 17 15 20 20 N 1.47022 * 107.27172 * 22.19419 * 19 18 17 21 21 C 1.34775 * 125.65111 * 181.02090 * 20 19 18 22 22 O 1.21279 * 120.00300 * 180.02562 * 21 20 19 23 23 C 1.50703 * 119.99773 * 0.02634 * 21 20 19 24 24 F 1.39905 * 109.47157 * 179.97438 * 23 21 20 25 25 F 1.39900 * 109.47159 * 60.00021 * 23 21 20 26 26 F 1.39897 * 109.47274 * 299.99712 * 23 21 20 27 27 H 1.08997 * 109.46911 * 300.00226 * 1 2 3 28 28 H 1.09003 * 109.46667 * 60.00425 * 1 2 3 29 29 H 1.08993 * 109.47035 * 179.97438 * 1 2 3 30 30 H 0.97005 * 119.99792 * 179.97438 * 7 6 4 31 31 H 0.96996 * 120.00076 * 265.00111 * 12 2 1 32 32 H 1.08998 * 111.18846 * 37.95699 * 17 15 13 33 33 H 1.09000 * 110.93914 * 274.05599 * 17 15 13 34 34 H 1.08998 * 110.71915 * 205.96828 * 18 17 15 35 35 H 1.09000 * 110.71875 * 82.69995 * 18 17 15 36 36 H 1.08993 * 109.88435 * 262.77654 * 19 18 17 37 37 H 1.09001 * 109.88232 * 141.60710 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8596 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8022 0.8744 2.6992 10 1 0.9770 1.9954 3.9070 11 1 0.8490 2.1772 1.4922 12 7 2.0184 -0.6907 -1.1961 13 6 2.1472 -0.0183 -2.3570 14 8 1.8583 1.1583 -2.4117 15 6 2.6491 -0.7288 -3.5876 16 1 3.4467 -1.4244 -3.3263 17 6 1.4857 -1.4758 -4.2913 18 6 2.0161 -1.5729 -5.7462 19 6 2.7755 -0.2417 -5.9268 20 7 3.1255 0.2468 -4.5850 21 6 3.7789 1.3936 -4.3121 22 8 4.0158 1.6977 -3.1623 23 6 4.2150 2.2979 -5.4360 24 9 4.8674 3.4171 -4.9075 25 9 3.0939 2.7124 -6.1629 26 9 5.0882 1.6043 -6.2807 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.9031 -0.5280 4.4376 31 1 2.2492 -1.6318 -1.1525 32 1 0.5633 -0.8967 -4.2496 33 1 1.3423 -2.4669 -3.8608 34 1 1.1901 -1.6448 -6.4537 35 1 2.6927 -2.4206 -5.8542 36 1 2.1370 0.4840 -6.4305 37 1 3.6820 -0.4080 -6.5088 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776345312.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:08 Heat of formation + Delta-G solvation = -202.672953 kcal Electronic energy + Delta-G solvation = -26897.933331 eV Core-core repulsion = 22454.190874 eV Total energy + Delta-G solvation = -4443.742457 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.45246 -47.98489 -47.91900 -40.73616 -38.52303 -37.50481 -34.94689 -32.54013 -32.13649 -30.63570 -29.08424 -27.77435 -25.19253 -24.17825 -22.33173 -21.70876 -20.48474 -19.69995 -18.94208 -18.91194 -18.32013 -17.38689 -16.78632 -16.24152 -15.47856 -15.30052 -15.02081 -14.74743 -14.69270 -14.40403 -14.36515 -14.10931 -14.06667 -14.03190 -13.93126 -13.51516 -13.31929 -12.96695 -12.90799 -12.48132 -12.19842 -12.09138 -11.77803 -11.61590 -11.24721 -11.13832 -10.80546 -10.28870 -10.17325 -9.71916 -9.40692 -9.21984 -8.85725 -8.72962 -8.13955 -6.19492 -4.21644 1.69534 1.87760 2.77130 3.14304 3.24544 3.37443 3.38685 3.43405 3.77058 3.93526 4.04219 4.15117 4.30161 4.33806 4.58372 4.90815 4.96284 5.15810 5.18086 5.29295 5.38685 5.47623 5.56622 5.75846 5.85878 6.31172 6.36470 6.55560 6.85188 6.87218 7.17772 7.29430 7.47899 7.53770 8.14422 8.51461 8.76675 8.91761 9.41583 10.92711 Molecular weight = 308.11amu Principal moments of inertia in cm(-1) A = 0.020120 B = 0.004329 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.324752 B = 6466.157909 C = 7189.756011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.238 3.762 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.893 5.893 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.697 5.697 13 C 0.501 3.499 14 O -0.530 6.530 15 C 0.116 3.884 16 H 0.105 0.895 17 C -0.120 4.120 18 C -0.125 4.125 19 C 0.085 3.915 20 N -0.587 5.587 21 C 0.497 3.503 22 O -0.438 6.438 23 C 0.456 3.544 24 F -0.153 7.153 25 F -0.168 7.168 26 F -0.171 7.171 27 H 0.047 0.953 28 H 0.034 0.966 29 H 0.053 0.947 30 H 0.267 0.733 31 H 0.394 0.606 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.776 -2.377 -22.965 23.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.135 3.865 3 H 0.067 0.933 4 C -0.571 4.571 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.714 3.286 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.345 5.345 13 C 0.284 3.716 14 O -0.406 6.406 15 C 0.010 3.990 16 H 0.123 0.877 17 C -0.158 4.158 18 C -0.163 4.163 19 C -0.037 4.037 20 N -0.324 5.324 21 C 0.275 3.725 22 O -0.306 6.306 23 C 0.398 3.602 24 F -0.134 7.134 25 F -0.150 7.150 26 F -0.153 7.153 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.227 0.773 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.767 -1.233 -22.118 22.166 hybrid contribution -0.355 0.512 0.028 0.624 sum 0.413 -0.721 -22.090 22.106 Atomic orbital electron populations 1.22439 0.99332 1.00743 0.99261 1.19100 0.90003 0.94799 0.82585 0.93300 1.21023 1.33212 1.14377 0.88510 0.90202 1.24818 0.95516 0.96633 0.95524 1.69868 1.44960 1.40120 0.98029 0.86885 0.80416 0.83727 0.77537 1.20330 1.22118 1.18656 1.46059 1.65397 1.13644 1.09448 1.20122 0.79396 0.87603 0.84502 1.90693 1.49945 1.15390 1.84589 1.22137 0.97883 0.89934 0.89031 0.87703 1.22817 0.97053 1.01357 0.94616 1.22621 1.00388 0.96150 0.97166 1.22398 1.00637 0.97296 0.83391 1.47970 1.55873 1.19925 1.08630 1.19676 0.81632 0.82008 0.89138 1.90992 1.51113 1.69914 1.18546 1.20261 0.76041 0.81162 0.82738 1.93266 1.81217 1.52751 1.86172 1.93234 1.51708 1.91047 1.78971 1.93220 1.70341 1.78863 1.72875 0.93466 0.94695 0.92814 0.92301 0.77277 0.89498 0.88251 0.89089 0.89688 0.90206 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 8.96 37.16 0.33 -3.23 16 2 C 0.24 5.79 2.15 -69.08 -0.15 5.64 16 3 H 0.05 1.35 6.63 -51.93 -0.34 1.01 16 4 C -0.53 -14.56 9.31 -34.44 -0.32 -14.88 16 5 H 0.08 2.27 7.98 -52.48 -0.42 1.86 16 6 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16 7 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 8 Si 0.88 22.25 24.37 -169.99 -4.14 18.11 16 9 H -0.28 -6.66 6.87 56.52 0.39 -6.27 16 10 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.26 -6.66 6.53 56.52 0.37 -6.29 16 12 N -0.70 -13.72 5.07 -54.93 -0.28 -14.00 16 13 C 0.50 9.45 6.11 -10.99 -0.07 9.38 16 14 O -0.53 -12.30 13.68 -18.14 -0.25 -12.55 16 15 C 0.12 1.51 3.57 -67.45 -0.24 1.26 16 16 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 17 C -0.12 -1.05 6.50 -24.46 -0.16 -1.21 16 18 C -0.13 -0.74 6.95 -24.90 -0.17 -0.92 16 19 C 0.09 0.70 6.05 -3.07 -0.02 0.68 16 20 N -0.59 -7.66 3.13 -164.21 -0.51 -8.18 16 21 C 0.50 7.98 6.66 -10.98 -0.07 7.90 16 22 O -0.44 -9.17 14.10 -18.14 -0.26 -9.42 16 23 C 0.46 6.08 2.94 36.01 0.11 6.18 16 24 F -0.15 -2.27 16.92 2.25 0.04 -2.23 16 25 F -0.17 -2.09 16.21 2.25 0.04 -2.05 16 26 F -0.17 -1.90 16.27 2.25 0.04 -1.87 16 27 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.39 6.59 8.54 -40.82 -0.35 6.24 16 32 H 0.09 0.88 8.06 -51.93 -0.42 0.46 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.63 7.37 -51.93 -0.38 0.25 16 37 H 0.08 0.54 7.48 -51.93 -0.39 0.15 16 LS Contribution 315.36 15.07 4.75 4.75 Total: -1.00 -35.11 315.36 -4.85 -39.96 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -4.19 Total: 0.44 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: -0.86 Total: 12.95 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.02 Total: -48.09 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.50 Total: -21.97 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.11 Total: -6.14 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.14 Total: 18.11 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.11 -4.85 -39.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776345312.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.715 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds