Wall clock time and date at job start Fri Apr 10 2020 17:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47393 * 2 1 4 4 C 1.50701 * 109.47119 * 119.99803 * 2 1 3 5 5 H 1.08007 * 120.00097 * 119.99762 * 4 2 1 6 6 C 1.37881 * 119.99952 * 300.00414 * 4 2 1 7 7 N 1.31516 * 119.99676 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99979 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.46911 * 90.00147 * 8 6 4 10 10 H 1.48501 * 109.47236 * 210.00094 * 8 6 4 11 11 H 1.48495 * 109.47048 * 330.00297 * 8 6 4 12 12 N 1.46502 * 109.47542 * 239.99737 * 2 1 3 13 13 C 1.34773 * 119.99471 * 85.00134 * 12 2 1 14 14 O 1.21277 * 120.00494 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99719 * 180.02562 * 13 12 2 16 16 H 1.09007 * 110.41201 * 320.83802 * 15 13 12 17 17 C 1.55133 * 110.34707 * 83.28182 * 15 13 12 18 18 C 1.55154 * 101.48505 * 156.05899 * 17 15 13 19 19 C 1.54317 * 102.94548 * 324.33356 * 18 17 15 20 20 N 1.47022 * 107.27172 * 22.19419 * 19 18 17 21 21 C 1.34775 * 125.65111 * 181.02090 * 20 19 18 22 22 O 1.21279 * 120.00300 * 180.02562 * 21 20 19 23 23 C 1.50703 * 119.99773 * 0.02634 * 21 20 19 24 24 F 1.39905 * 109.47157 * 179.97438 * 23 21 20 25 25 F 1.39900 * 109.47159 * 60.00021 * 23 21 20 26 26 F 1.39897 * 109.47274 * 299.99712 * 23 21 20 27 27 H 1.08997 * 109.46911 * 300.00226 * 1 2 3 28 28 H 1.09003 * 109.46667 * 60.00425 * 1 2 3 29 29 H 1.08993 * 109.47035 * 179.97438 * 1 2 3 30 30 H 0.97005 * 119.99792 * 179.97438 * 7 6 4 31 31 H 0.96996 * 120.00076 * 265.00111 * 12 2 1 32 32 H 1.08998 * 111.18846 * 37.95699 * 17 15 13 33 33 H 1.09000 * 110.93914 * 274.05599 * 17 15 13 34 34 H 1.08998 * 110.71915 * 205.96828 * 18 17 15 35 35 H 1.09000 * 110.71875 * 82.69995 * 18 17 15 36 36 H 1.08993 * 109.88435 * 262.77654 * 19 18 17 37 37 H 1.09001 * 109.88232 * 141.60710 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8596 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8022 0.8744 2.6992 10 1 0.9770 1.9954 3.9070 11 1 0.8490 2.1772 1.4922 12 7 2.0184 -0.6907 -1.1961 13 6 2.1472 -0.0183 -2.3570 14 8 1.8583 1.1583 -2.4117 15 6 2.6491 -0.7288 -3.5876 16 1 3.4467 -1.4244 -3.3263 17 6 1.4857 -1.4758 -4.2913 18 6 2.0161 -1.5729 -5.7462 19 6 2.7755 -0.2417 -5.9268 20 7 3.1255 0.2468 -4.5850 21 6 3.7789 1.3936 -4.3121 22 8 4.0158 1.6977 -3.1623 23 6 4.2150 2.2979 -5.4360 24 9 4.8674 3.4171 -4.9075 25 9 3.0939 2.7124 -6.1629 26 9 5.0882 1.6043 -6.2807 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.9031 -0.5280 4.4376 31 1 2.2492 -1.6318 -1.1525 32 1 0.5633 -0.8967 -4.2496 33 1 1.3423 -2.4669 -3.8608 34 1 1.1901 -1.6448 -6.4537 35 1 2.6927 -2.4206 -5.8542 36 1 2.1370 0.4840 -6.4305 37 1 3.6820 -0.4080 -6.5088 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776345312.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:07 Heat of formation + Delta-G solvation = -228.789978 kcal Electronic energy + Delta-G solvation = -26899.065850 eV Core-core repulsion = 22454.190874 eV Total energy + Delta-G solvation = -4444.874976 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.113 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.50824 -49.01983 -48.98593 -41.90546 -40.00350 -38.59674 -36.77560 -34.44783 -33.23027 -32.12785 -30.31349 -28.81145 -27.24083 -25.21372 -23.70311 -22.49646 -21.94491 -21.17751 -20.16222 -19.95756 -19.48830 -18.77473 -18.12405 -17.81056 -17.20519 -16.60366 -16.14869 -15.96810 -15.79940 -15.64358 -15.49547 -15.40928 -15.14598 -15.10744 -15.06418 -14.96940 -14.59399 -14.29890 -14.25044 -14.13294 -13.73296 -13.37563 -13.22512 -12.82210 -12.71797 -12.30583 -12.16387 -11.74105 -11.64984 -11.52884 -11.30345 -10.89587 -10.80120 -10.06371 -9.83867 -8.40764 -6.45674 0.57755 0.71905 1.22343 1.32300 1.41739 1.65212 1.82213 2.23297 2.25479 2.49331 2.84233 2.95641 2.98104 3.44635 3.46774 3.82626 4.05680 4.12107 4.37252 4.43831 4.53499 4.62987 4.68783 4.72271 4.79076 4.98190 5.01778 5.13902 5.28503 5.30883 5.42437 5.62802 5.82095 6.11454 6.34652 6.55383 6.84596 7.17602 7.44996 8.74475 Molecular weight = 308.11amu Principal moments of inertia in cm(-1) A = 0.020120 B = 0.004329 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.324752 B = 6466.157909 C = 7189.756011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.244 3.756 3 H 0.008 0.992 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.031 3.969 7 N -0.931 5.931 8 Si 0.936 3.064 9 H -0.254 1.254 10 H -0.292 1.292 11 H -0.273 1.273 12 N -0.696 5.696 13 C 0.495 3.505 14 O -0.577 6.577 15 C 0.115 3.885 16 H 0.130 0.870 17 C -0.114 4.114 18 C -0.109 4.109 19 C 0.071 3.929 20 N -0.583 5.583 21 C 0.485 3.515 22 O -0.504 6.504 23 C 0.469 3.531 24 F -0.164 7.164 25 F -0.160 7.160 26 F -0.154 7.154 27 H 0.037 0.963 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.270 0.730 31 H 0.409 0.591 32 H 0.071 0.929 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.220 -3.933 -25.749 26.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.139 3.861 3 H 0.026 0.974 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.169 4.169 7 N -0.570 5.570 8 Si 0.764 3.236 9 H -0.179 1.179 10 H -0.219 1.219 11 H -0.198 1.198 12 N -0.346 5.346 13 C 0.281 3.719 14 O -0.456 6.456 15 C 0.009 3.991 16 H 0.147 0.853 17 C -0.153 4.153 18 C -0.146 4.146 19 C -0.049 4.049 20 N -0.317 5.317 21 C 0.265 3.735 22 O -0.377 6.377 23 C 0.411 3.589 24 F -0.146 7.146 25 F -0.142 7.142 26 F -0.135 7.135 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.245 0.755 32 H 0.090 0.910 33 H 0.145 0.855 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.249 -2.858 -24.977 25.141 hybrid contribution 0.015 0.942 0.807 1.241 sum -0.234 -1.916 -24.169 24.246 Atomic orbital electron populations 1.22291 0.97407 1.01958 0.99177 1.18693 0.91407 0.92625 0.83350 0.97383 1.21246 1.32286 1.13555 0.89800 0.92191 1.25500 0.96860 0.99055 0.95443 1.69965 1.46654 1.41812 0.98606 0.86056 0.80215 0.80514 0.76840 1.17888 1.21949 1.19835 1.45862 1.65732 1.14281 1.08739 1.21144 0.77994 0.87194 0.85612 1.90668 1.51704 1.17698 1.85514 1.22378 1.00286 0.89683 0.86747 0.85300 1.22914 0.94493 1.01606 0.96239 1.22688 1.01267 0.95352 0.95301 1.22859 1.02287 0.98764 0.80994 1.48265 1.53835 1.18872 1.10750 1.20160 0.81476 0.82878 0.88963 1.90959 1.54017 1.71688 1.21006 1.19783 0.76300 0.80461 0.82331 1.93243 1.81464 1.53355 1.86493 1.93250 1.51411 1.90927 1.78579 1.93254 1.69739 1.78414 1.72091 0.94421 0.93814 0.90865 0.92023 0.75523 0.90994 0.85480 0.86489 0.87059 0.89741 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.59 8.96 71.98 0.65 -5.94 16 2 C 0.24 12.01 2.15 44.25 0.10 12.10 16 3 H 0.01 0.48 6.63 -2.38 -0.02 0.46 16 4 C -0.53 -29.49 9.31 25.60 0.24 -29.25 16 5 H 0.06 3.49 7.98 -2.91 -0.02 3.47 16 6 C 0.03 1.81 5.45 84.66 0.46 2.27 16 7 N -0.93 -56.53 13.96 21.45 0.30 -56.23 16 8 Si 0.94 46.36 24.37 68.60 1.67 48.03 16 9 H -0.25 -11.55 6.87 99.48 0.68 -10.87 16 10 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 11 H -0.27 -13.93 6.53 99.48 0.65 -13.28 16 12 N -0.70 -27.35 5.07 -446.09 -2.26 -29.62 16 13 C 0.49 18.61 6.11 87.66 0.54 19.15 16 14 O -0.58 -27.47 13.68 19.63 0.27 -27.21 16 15 C 0.11 2.74 3.57 44.80 0.16 2.90 16 16 H 0.13 2.49 8.14 -2.38 -0.02 2.47 16 17 C -0.11 -1.57 6.50 32.06 0.21 -1.36 16 18 C -0.11 -0.72 6.95 31.78 0.22 -0.50 16 19 C 0.07 0.91 6.05 86.73 0.52 1.43 16 20 N -0.58 -14.16 3.13 -791.84 -2.48 -16.64 16 21 C 0.49 15.54 6.66 87.66 0.58 16.12 16 22 O -0.50 -21.94 14.10 19.63 0.28 -21.67 16 23 C 0.47 12.16 2.94 71.24 0.21 12.37 16 24 F -0.16 -4.92 16.92 44.97 0.76 -4.16 16 25 F -0.16 -3.77 16.21 44.97 0.73 -3.04 16 26 F -0.15 -3.11 16.27 44.97 0.73 -2.37 16 27 H 0.04 1.71 3.27 -2.39 -0.01 1.70 16 28 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 31 H 0.41 13.35 8.54 -92.71 -0.79 12.56 16 32 H 0.07 1.25 8.06 -2.39 -0.02 1.23 16 33 H 0.13 1.09 8.14 -2.39 -0.02 1.08 16 34 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.08 1.05 7.37 -2.39 -0.02 1.03 16 37 H 0.10 0.92 7.48 -2.39 -0.02 0.90 16 Total: -1.00 -80.75 315.36 4.14 -76.61 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 0.26 Total: 7.01 kcal Atomic # 6 Polarization: 25.40 SS G_CDS: 3.88 Total: 29.28 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -4.44 Total: -102.48 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: 0.55 Total: -48.87 kcal Atomic # 9 Polarization: -11.80 SS G_CDS: 2.22 Total: -9.57 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.67 Total: 48.03 kcal Total: -80.75 4.14 -76.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776345312.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.177 kcal (2) G-P(sol) polarization free energy of solvation -80.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds