Wall clock time and date at job start Fri Apr 10 2020 17:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35423 * 116.99500 * 2 1 4 4 N 1.32225 * 119.80416 * 359.97438 * 3 2 1 5 5 C 1.31886 * 121.80216 * 180.02562 * 4 3 2 6 6 C 1.50703 * 119.39892 * 180.02562 * 5 4 3 7 7 C 1.38373 * 121.20062 * 0.28236 * 5 4 3 8 8 C 1.38314 * 119.45854 * 359.42672 * 7 5 4 9 9 C 1.40048 * 118.35076 * 0.55370 * 8 7 5 10 10 C 1.47388 * 120.60725 * 179.70887 * 9 8 7 11 11 O 1.21509 * 120.00458 * 180.02562 * 10 9 8 12 12 O 1.34753 * 119.99676 * 0.02562 * 10 9 8 13 13 C 1.45206 * 116.99804 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.47049 * 180.02562 * 13 12 10 15 15 O 1.21285 * 120.00091 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00015 * 180.02562 * 14 13 12 17 17 C 1.46498 * 120.00217 * 180.02562 * 16 14 13 18 18 C 1.50704 * 109.47264 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00208 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99848 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00115 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99864 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47150 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47214 * 119.99887 * 22 20 18 25 25 H 1.48498 * 109.47400 * 240.00201 * 22 20 18 26 26 H 1.08994 * 109.47317 * 60.00534 * 1 2 3 27 27 H 1.09007 * 109.46761 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46889 * 300.00254 * 1 2 3 29 29 H 1.09002 * 109.47152 * 90.00220 * 6 5 4 30 30 H 1.09001 * 109.46980 * 330.00321 * 6 5 4 31 31 H 1.09004 * 109.47113 * 210.00302 * 6 5 4 32 32 H 1.07998 * 120.26614 * 179.72042 * 7 5 4 33 33 H 1.08007 * 120.82295 * 180.28402 * 8 7 5 34 34 H 1.09001 * 109.46632 * 299.99923 * 13 12 10 35 35 H 1.08996 * 109.46967 * 59.99890 * 13 12 10 36 36 H 0.97005 * 120.00319 * 359.97438 * 16 14 13 37 37 H 1.09008 * 109.47034 * 299.99586 * 17 16 14 38 38 H 1.08998 * 109.47365 * 59.99162 * 17 16 14 39 39 H 0.96998 * 120.00290 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2067 0.0000 4 7 1.3197 2.3131 -0.0005 5 6 1.8770 3.5084 -0.0010 6 6 0.9996 4.7337 -0.0010 7 6 3.2526 3.6579 -0.0069 8 6 4.0590 2.5342 -0.0003 9 6 3.4454 1.2753 0.0003 10 6 4.2569 0.0450 0.0008 11 8 3.7131 -1.0416 0.0009 12 8 5.6021 0.1252 0.0012 13 6 6.3371 -1.1271 0.0011 14 6 7.8166 -0.8412 0.0022 15 8 8.2127 0.3052 0.0025 16 7 8.6997 -1.8593 0.0018 17 6 10.1381 -1.5813 0.0034 18 6 10.9009 -2.8810 0.0032 19 1 10.3677 -3.8202 0.0024 20 6 12.2797 -2.8711 0.0041 21 7 12.9291 -1.7275 0.0046 22 14 13.2252 -4.4821 0.0045 23 1 12.2683 -5.6177 0.0044 24 1 14.0802 -4.5546 -1.2075 25 1 14.0788 -4.5549 1.2175 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7885 5.0294 1.0267 30 1 0.0643 4.5108 -0.5144 31 1 1.5115 5.5471 -0.5153 32 1 3.6929 4.6441 -0.0118 33 1 5.1352 2.6254 0.0000 34 1 6.0775 -1.7007 0.8909 35 1 6.0780 -1.7003 -0.8890 36 1 8.3830 -2.7761 0.0012 37 1 10.3982 -1.0068 -0.8857 38 1 10.3966 -1.0088 0.8942 39 1 13.8991 -1.7205 0.0055 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777228918.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:21 Heat of formation + Delta-G solvation = -123.521195 kcal Electronic energy + Delta-G solvation = -24100.033930 eV Core-core repulsion = 20201.580491 eV Total energy + Delta-G solvation = -3898.453439 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.30330 -40.05280 -38.61964 -38.38602 -36.19501 -34.24583 -33.60901 -32.40881 -32.14788 -29.45449 -28.74194 -27.40150 -26.49623 -23.82008 -23.17315 -22.58666 -21.29989 -19.93017 -18.60560 -18.01863 -17.63458 -16.88492 -16.73032 -16.35509 -16.19699 -15.54728 -15.12705 -14.84075 -14.61238 -14.56437 -14.41258 -14.34561 -13.73588 -13.10049 -13.09027 -12.90445 -12.67671 -12.63623 -12.39519 -12.04730 -11.99010 -11.75976 -11.38868 -10.99086 -10.94331 -10.67144 -10.64548 -10.34832 -10.25245 -10.10902 -9.42501 -9.17421 -8.85678 -8.78961 -7.98910 -6.20109 -4.27262 0.24214 0.92400 2.36221 2.40489 2.71506 3.18235 3.22355 3.29629 3.32715 3.40632 3.68617 4.00216 4.32799 4.34265 4.47822 4.65304 4.86981 4.96483 4.99366 5.02303 5.12323 5.15319 5.16238 5.20606 5.27393 5.33570 5.35699 5.51297 5.58735 5.70056 6.03611 6.32650 6.85692 7.22448 7.30984 7.36960 7.45494 7.60044 7.74341 7.91598 8.50131 8.71090 8.96405 9.39165 10.90086 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.031043 B = 0.002315 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.762853 B =12089.984349 C =12960.694940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.274 6.274 3 C 0.383 3.617 4 N -0.549 5.549 5 C 0.200 3.800 6 C -0.110 4.110 7 C -0.225 4.225 8 C 0.024 3.976 9 C -0.205 4.205 10 C 0.512 3.488 11 O -0.489 6.489 12 O -0.328 6.328 13 C 0.051 3.949 14 C 0.501 3.499 15 O -0.536 6.536 16 N -0.706 5.706 17 C 0.251 3.749 18 C -0.544 4.544 19 H 0.065 0.935 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.060 0.940 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.148 0.852 33 H 0.163 0.837 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.393 0.607 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.564 9.560 0.005 27.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.178 6.178 3 C 0.203 3.797 4 N -0.274 5.274 5 C 0.063 3.937 6 C -0.167 4.167 7 C -0.245 4.245 8 C -0.001 4.001 9 C -0.209 4.209 10 C 0.356 3.644 11 O -0.378 6.378 12 O -0.244 6.244 13 C -0.026 4.026 14 C 0.284 3.716 15 O -0.413 6.413 16 N -0.357 5.357 17 C 0.131 3.869 18 C -0.583 4.583 19 H 0.083 0.917 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.079 0.921 27 H 0.118 0.882 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.166 0.834 33 H 0.181 0.819 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.226 0.774 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -25.995 9.742 0.003 27.761 hybrid contribution 1.117 -1.315 0.013 1.725 sum -24.879 8.426 0.016 26.267 Atomic orbital electron populations 1.22978 0.77183 1.03443 1.02410 1.86517 1.22707 1.22978 1.85548 1.19737 0.87607 0.85213 0.87132 1.67330 1.39816 0.98093 1.22189 1.21286 0.92341 0.91944 0.88140 1.20855 0.99374 0.92711 1.03742 1.21845 0.93599 1.00371 1.08662 1.21985 1.02078 0.89695 0.86354 1.19057 0.90123 0.93190 1.18544 1.20601 0.81177 0.88877 0.73766 1.90884 1.72830 1.28998 1.45045 1.86572 1.18467 1.35270 1.84043 1.22859 0.90663 0.84391 1.04707 1.19880 0.86578 0.86499 0.78686 1.90696 1.80066 1.20849 1.49694 1.46362 1.09045 1.07846 1.72402 1.19182 0.72474 0.97252 0.98027 1.21252 0.91608 0.92065 1.53333 0.91695 1.24958 0.97510 0.96944 0.94629 1.69979 1.08356 1.25055 1.48815 0.86334 0.79788 0.82866 0.77766 1.19597 1.20771 1.20777 0.92120 0.88217 0.92124 0.89557 0.90085 0.89821 0.83436 0.81921 0.88429 0.88420 0.77383 0.95238 0.95251 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.35 16 2 O -0.27 -3.57 8.58 -39.74 -0.34 -3.91 16 3 C 0.38 4.92 7.51 -16.59 -0.12 4.79 16 4 N -0.55 -6.00 9.11 -9.19 -0.08 -6.08 16 5 C 0.20 1.73 6.78 -82.52 -0.56 1.17 16 6 C -0.11 -0.54 10.16 36.01 0.37 -0.17 16 7 C -0.22 -1.88 9.71 -39.50 -0.38 -2.26 16 8 C 0.02 0.26 9.73 -38.88 -0.38 -0.12 16 9 C -0.20 -2.72 5.90 -104.70 -0.62 -3.34 16 10 C 0.51 7.93 7.90 34.45 0.27 8.21 16 11 O -0.49 -8.36 14.98 -26.56 -0.40 -8.76 16 12 O -0.33 -5.37 9.08 -47.32 -0.43 -5.79 16 13 C 0.05 0.80 5.95 36.00 0.21 1.02 16 14 C 0.50 10.03 7.91 -10.99 -0.09 9.94 16 15 O -0.54 -12.91 16.50 -14.11 -0.23 -13.14 16 16 N -0.71 -14.62 5.55 -61.47 -0.34 -14.96 16 17 C 0.25 6.54 5.43 -5.19 -0.03 6.52 16 18 C -0.54 -14.57 9.28 -34.44 -0.32 -14.89 16 19 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.88 -25.79 13.29 55.43 0.74 -25.05 16 22 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 26 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 27 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.26 8.07 -51.93 -0.42 -0.16 16 32 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.16 1.69 7.70 -52.48 -0.40 1.28 16 34 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.39 6.86 8.32 -40.82 -0.34 6.52 16 37 H 0.03 0.85 8.14 -51.92 -0.42 0.43 16 38 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 351.29 15.07 5.29 5.29 Total: -1.00 -35.00 351.29 -6.43 -41.43 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -4.92 Total: 1.45 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: -0.69 Total: 13.86 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.31 Total: -46.09 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -1.40 Total: -31.61 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.00 -6.43 -41.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777228918.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.089 kcal (2) G-P(sol) polarization free energy of solvation -35.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds