Wall clock time and date at job start Fri Apr 10 2020 17:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35423 * 116.99500 * 2 1 4 4 N 1.32225 * 119.80416 * 359.97438 * 3 2 1 5 5 C 1.31886 * 121.80216 * 180.02562 * 4 3 2 6 6 C 1.50703 * 119.39892 * 180.02562 * 5 4 3 7 7 C 1.38373 * 121.20062 * 0.28236 * 5 4 3 8 8 C 1.38314 * 119.45854 * 359.42672 * 7 5 4 9 9 C 1.40048 * 118.35076 * 0.55370 * 8 7 5 10 10 C 1.47388 * 120.60725 * 179.70887 * 9 8 7 11 11 O 1.21509 * 120.00458 * 180.02562 * 10 9 8 12 12 O 1.34753 * 119.99676 * 0.02562 * 10 9 8 13 13 C 1.45206 * 116.99804 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.47049 * 180.02562 * 13 12 10 15 15 O 1.21285 * 120.00091 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00015 * 180.02562 * 14 13 12 17 17 C 1.46498 * 120.00217 * 180.02562 * 16 14 13 18 18 C 1.50704 * 109.47264 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00208 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99848 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00115 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99864 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47150 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47214 * 119.99887 * 22 20 18 25 25 H 1.48498 * 109.47400 * 240.00201 * 22 20 18 26 26 H 1.08994 * 109.47317 * 60.00534 * 1 2 3 27 27 H 1.09007 * 109.46761 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46889 * 300.00254 * 1 2 3 29 29 H 1.09002 * 109.47152 * 90.00220 * 6 5 4 30 30 H 1.09001 * 109.46980 * 330.00321 * 6 5 4 31 31 H 1.09004 * 109.47113 * 210.00302 * 6 5 4 32 32 H 1.07998 * 120.26614 * 179.72042 * 7 5 4 33 33 H 1.08007 * 120.82295 * 180.28402 * 8 7 5 34 34 H 1.09001 * 109.46632 * 299.99923 * 13 12 10 35 35 H 1.08996 * 109.46967 * 59.99890 * 13 12 10 36 36 H 0.97005 * 120.00319 * 359.97438 * 16 14 13 37 37 H 1.09008 * 109.47034 * 299.99586 * 17 16 14 38 38 H 1.08998 * 109.47365 * 59.99162 * 17 16 14 39 39 H 0.96998 * 120.00290 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2067 0.0000 4 7 1.3197 2.3131 -0.0005 5 6 1.8770 3.5084 -0.0010 6 6 0.9996 4.7337 -0.0010 7 6 3.2526 3.6579 -0.0069 8 6 4.0590 2.5342 -0.0003 9 6 3.4454 1.2753 0.0003 10 6 4.2569 0.0450 0.0008 11 8 3.7131 -1.0416 0.0009 12 8 5.6021 0.1252 0.0012 13 6 6.3371 -1.1271 0.0011 14 6 7.8166 -0.8412 0.0022 15 8 8.2127 0.3052 0.0025 16 7 8.6997 -1.8593 0.0018 17 6 10.1381 -1.5813 0.0034 18 6 10.9009 -2.8810 0.0032 19 1 10.3677 -3.8202 0.0024 20 6 12.2797 -2.8711 0.0041 21 7 12.9291 -1.7275 0.0046 22 14 13.2252 -4.4821 0.0045 23 1 12.2683 -5.6177 0.0044 24 1 14.0802 -4.5546 -1.2075 25 1 14.0788 -4.5549 1.2175 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7885 5.0294 1.0267 30 1 0.0643 4.5108 -0.5144 31 1 1.5115 5.5471 -0.5153 32 1 3.6929 4.6441 -0.0118 33 1 5.1352 2.6254 0.0000 34 1 6.0775 -1.7007 0.8909 35 1 6.0780 -1.7003 -0.8890 36 1 8.3830 -2.7761 0.0012 37 1 10.3982 -1.0068 -0.8857 38 1 10.3966 -1.0088 0.8942 39 1 13.8991 -1.7205 0.0055 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777228918.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:20 Heat of formation + Delta-G solvation = -148.724146 kcal Electronic energy + Delta-G solvation = -24101.126812 eV Core-core repulsion = 20201.580491 eV Total energy + Delta-G solvation = -3899.546321 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.22243 -41.24880 -40.24679 -39.19182 -37.47053 -36.18055 -34.45537 -34.37154 -32.86230 -30.90637 -29.56386 -28.67613 -27.78105 -24.96036 -24.29610 -23.93279 -22.38279 -21.64786 -19.59684 -19.24085 -18.86890 -18.27979 -17.89721 -17.50191 -17.24852 -17.14117 -16.87699 -16.13278 -16.08011 -15.53495 -15.29185 -15.08607 -14.91130 -14.50262 -14.48427 -14.05669 -13.76657 -13.69479 -13.50688 -13.31696 -13.04895 -12.91560 -12.75804 -12.73642 -12.22776 -12.09000 -11.91989 -11.80735 -11.47011 -11.07894 -10.99756 -10.84490 -10.83151 -9.93243 -9.65087 -8.29884 -6.46097 -0.61883 0.13135 1.14261 1.34662 1.44670 1.44870 1.54599 1.58669 1.92381 2.32923 2.53859 2.56694 3.02982 3.05450 3.54815 3.65252 3.71066 3.78301 4.02075 4.04642 4.15476 4.26543 4.37421 4.38673 4.69484 4.71489 4.80771 4.88858 4.91590 5.06346 5.14250 5.15881 5.22206 5.41247 5.41773 5.62792 5.82093 6.06764 6.52625 6.60595 6.63106 6.77602 7.19947 7.34753 8.82428 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.031043 B = 0.002315 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.762853 B =12089.984349 C =12960.694940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.300 6.300 3 C 0.372 3.628 4 N -0.555 5.555 5 C 0.201 3.799 6 C -0.107 4.107 7 C -0.214 4.214 8 C 0.018 3.982 9 C -0.235 4.235 10 C 0.515 3.485 11 O -0.512 6.512 12 O -0.342 6.342 13 C 0.062 3.938 14 C 0.502 3.498 15 O -0.581 6.581 16 N -0.699 5.699 17 C 0.266 3.734 18 C -0.556 4.556 19 H 0.085 0.915 20 C 0.004 3.996 21 N -0.929 5.929 22 Si 0.985 3.015 23 H -0.254 1.254 24 H -0.279 1.279 25 H -0.279 1.279 26 H 0.065 0.935 27 H 0.117 0.883 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.183 0.817 33 H 0.161 0.839 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.412 0.588 37 H -0.006 1.006 38 H -0.006 1.006 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.151 9.323 0.011 28.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.204 6.204 3 C 0.193 3.807 4 N -0.281 5.281 5 C 0.064 3.936 6 C -0.164 4.164 7 C -0.234 4.234 8 C -0.007 4.007 9 C -0.240 4.240 10 C 0.360 3.640 11 O -0.402 6.402 12 O -0.258 6.258 13 C -0.015 4.015 14 C 0.288 3.712 15 O -0.461 6.461 16 N -0.350 5.350 17 C 0.144 3.856 18 C -0.594 4.594 19 H 0.103 0.897 20 C -0.196 4.196 21 N -0.568 5.568 22 Si 0.808 3.192 23 H -0.177 1.177 24 H -0.205 1.205 25 H -0.205 1.205 26 H 0.084 0.916 27 H 0.136 0.864 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.101 0.899 31 H 0.127 0.873 32 H 0.200 0.800 33 H 0.179 0.821 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.249 0.751 37 H 0.012 0.988 38 H 0.012 0.988 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -27.634 9.479 0.009 29.215 hybrid contribution 1.500 -1.082 0.013 1.849 sum -26.135 8.397 0.022 27.451 Atomic orbital electron populations 1.23193 0.75346 1.04837 1.02899 1.86471 1.24727 1.23628 1.85600 1.19863 0.87577 0.85784 0.87518 1.67446 1.39687 0.98375 1.22590 1.22056 0.93245 0.92382 0.85915 1.21010 0.98950 0.91387 1.05034 1.22227 0.93363 1.01025 1.06747 1.22083 1.02316 0.89742 0.86561 1.19111 0.90366 0.93096 1.21406 1.20975 0.80548 0.89541 0.72914 1.90854 1.72900 1.29902 1.46495 1.86565 1.19281 1.35551 1.84355 1.22747 0.87021 0.84640 1.07113 1.20585 0.88415 0.85412 0.76811 1.90673 1.81254 1.22736 1.51438 1.46042 1.07192 1.09268 1.72513 1.18645 0.75616 0.96648 0.94684 1.21641 0.92150 0.92679 1.52909 0.89659 1.26046 0.98759 1.00880 0.93882 1.70131 1.08864 1.27885 1.49908 0.85106 0.78203 0.78225 0.77651 1.17726 1.20482 1.20493 0.91585 0.86448 0.91589 0.88014 0.89900 0.87321 0.79983 0.82145 0.85917 0.85905 0.75137 0.98839 0.98847 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.38 113.37 1.18 1.70 16 2 O -0.30 -7.84 8.58 -66.36 -0.57 -8.41 16 3 C 0.37 9.50 7.51 85.15 0.64 10.14 16 4 N -0.55 -11.47 9.11 -296.01 -2.70 -14.17 16 5 C 0.20 3.03 6.78 42.58 0.29 3.31 16 6 C -0.11 -0.68 10.16 71.24 0.72 0.04 16 7 C -0.21 -3.11 9.71 22.32 0.22 -2.90 16 8 C 0.02 0.38 9.73 22.73 0.22 0.60 16 9 C -0.24 -6.30 5.90 -19.92 -0.12 -6.42 16 10 C 0.51 16.11 7.90 70.23 0.55 16.66 16 11 O -0.51 -17.54 14.98 26.78 0.40 -17.14 16 12 O -0.34 -11.24 9.08 -50.25 -0.46 -11.70 16 13 C 0.06 1.88 5.95 71.23 0.42 2.31 16 14 C 0.50 20.37 7.91 87.66 0.69 21.06 16 15 O -0.58 -29.02 16.50 15.75 0.26 -28.76 16 16 N -0.70 -29.12 5.55 -466.79 -2.59 -31.71 16 17 C 0.27 14.39 5.43 85.63 0.46 14.86 16 18 C -0.56 -29.82 9.28 25.60 0.24 -29.58 16 19 H 0.09 4.13 7.60 -2.91 -0.02 4.11 16 20 C 0.00 0.23 5.46 84.66 0.46 0.69 16 21 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 22 Si 0.98 42.02 29.54 68.60 2.03 44.05 16 23 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 24 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 26 H 0.07 0.99 8.10 -2.39 -0.02 0.97 16 27 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.07 0.99 8.10 -2.39 -0.02 0.97 16 29 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.54 16 31 H 0.11 0.20 8.07 -2.38 -0.02 0.18 16 32 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.16 3.37 7.70 -2.91 -0.02 3.35 16 34 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 35 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 36 H 0.41 13.94 8.32 -92.70 -0.77 13.17 16 37 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 38 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -78.76 351.29 2.96 -75.79 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.32 Total: 14.72 kcal Atomic # 6 Polarization: 26.49 SS G_CDS: 5.99 Total: 32.48 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -5.00 Total: -101.03 kcal Atomic # 8 Polarization: -65.65 SS G_CDS: -0.36 Total: -66.01 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -78.76 2.96 -75.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777228918.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.931 kcal (2) G-P(sol) polarization free energy of solvation -78.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds