Wall clock time and date at job start Fri Apr 10 2020 17:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86807 * 119.99693 * 2 1 4 4 H 1.48501 * 109.46873 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47010 * 300.00515 * 3 2 1 6 6 H 1.48504 * 109.46948 * 60.00694 * 3 2 1 7 7 C 1.38942 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00008 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00355 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00167 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00100 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00177 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47361 * 180.02562 * 12 10 9 14 14 C 1.48728 * 111.01444 * 54.49261 * 13 12 10 15 15 C 1.54378 * 104.51686 * 158.96396 * 14 13 12 16 16 C 1.54257 * 105.15061 * 336.27373 * 15 14 13 17 17 O 1.42895 * 110.33091 * 118.84632 * 16 15 14 18 18 C 1.50701 * 110.31963 * 240.94838 * 16 15 14 19 19 C 1.38249 * 119.97738 * 233.62268 * 18 16 15 20 20 C 1.38193 * 120.03015 * 179.76846 * 19 18 16 21 21 C 1.38466 * 119.97263 * 0.50643 * 20 19 18 22 22 F 1.35093 * 120.02834 * 179.76625 * 21 20 19 23 23 C 1.38457 * 119.94736 * 359.75123 * 21 20 19 24 24 C 1.38205 * 119.97779 * 359.97438 * 23 21 20 25 25 C 1.48562 * 111.00074 * 170.00081 * 13 12 10 26 26 H 0.96998 * 120.00272 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99568 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.47179 * 59.99956 * 12 10 9 29 29 H 1.09005 * 109.47280 * 300.00668 * 12 10 9 30 30 H 1.09002 * 110.38576 * 40.24145 * 14 13 12 31 31 H 1.08994 * 110.50376 * 277.75010 * 14 13 12 32 32 H 1.09001 * 110.32377 * 217.31656 * 15 14 13 33 33 H 1.09006 * 110.32329 * 95.21545 * 15 14 13 34 34 H 0.96696 * 113.99985 * 61.44385 * 17 16 15 35 35 H 1.08004 * 119.98345 * 0.02562 * 19 18 16 36 36 H 1.07993 * 120.01766 * 180.25323 * 20 19 18 37 37 H 1.08005 * 120.01632 * 179.97438 * 23 21 20 38 38 H 1.07995 * 119.98943 * 180.02562 * 24 23 21 39 39 H 1.08996 * 110.41335 * 82.18428 * 25 13 12 40 40 H 1.09002 * 110.40801 * 319.73732 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8892 2.3966 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 7 2.1986 -5.9794 -0.0027 14 6 3.1580 -5.8613 1.1276 15 6 3.7011 -7.2928 1.3254 16 6 2.6164 -8.2200 0.7397 17 8 3.1476 -8.9815 -0.3465 18 6 2.0800 -9.1378 1.8079 19 6 2.0709 -10.5050 1.6033 20 6 1.5837 -11.3479 2.5840 21 6 1.0948 -10.8220 3.7679 22 9 0.6139 -11.6446 4.7255 23 6 1.0994 -9.4522 3.9697 24 6 1.5924 -8.6115 2.9897 25 6 1.5064 -7.2718 0.2376 26 1 -0.4850 0.8400 0.0004 27 1 0.3535 -2.3906 -0.0005 28 1 0.6169 -4.9201 -0.8919 29 1 0.6175 -4.9213 0.8880 30 1 2.6449 -5.5216 2.0273 31 1 3.9685 -5.1793 0.8706 32 1 3.8444 -7.5002 2.3858 33 1 4.6395 -7.4197 0.7853 34 1 3.8794 -9.5628 -0.0985 35 1 2.4486 -10.9148 0.6781 36 1 1.5805 -12.4162 2.4256 37 1 0.7179 -9.0407 4.8925 38 1 1.5965 -7.5431 3.1471 39 1 1.0742 -7.6496 -0.6890 40 1 0.7344 -7.1539 0.9980 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777731354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:24 Heat of formation + Delta-G solvation = -89.600258 kcal Electronic energy + Delta-G solvation = -24924.196740 eV Core-core repulsion = 21039.587012 eV Total energy + Delta-G solvation = -3884.609727 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.17184 -40.52152 -38.71630 -37.62086 -35.75915 -33.91627 -32.11302 -31.32831 -31.24450 -30.13075 -28.16651 -26.32199 -24.27701 -23.37462 -22.66005 -21.30885 -20.39501 -19.21036 -18.31987 -17.86281 -17.42717 -16.58402 -15.97347 -15.86723 -15.85207 -15.15373 -14.81952 -14.57794 -14.45033 -14.04897 -13.90576 -13.84708 -13.58027 -13.35477 -13.08880 -12.76772 -12.54624 -12.29279 -11.86250 -11.56205 -11.53073 -11.32496 -11.28891 -11.14066 -11.00529 -10.77046 -10.36747 -10.25839 -10.18444 -9.52243 -9.43600 -8.85853 -8.43639 -8.04632 -7.93444 -6.44189 -3.85098 0.77895 0.90322 3.14637 3.21231 3.25610 3.32585 3.85813 3.91183 3.96706 4.02414 4.18626 4.40459 4.50813 4.57158 4.67968 4.72847 4.96211 5.03146 5.11488 5.22492 5.33106 5.48240 5.55884 5.62146 5.68862 5.76758 5.78392 5.81157 5.82814 5.92100 5.95882 6.16724 6.20573 6.24044 6.54545 6.58973 7.12922 7.21113 7.51050 7.53300 8.03579 8.58687 9.15460 9.51090 10.02455 10.73537 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.026605 B = 0.002727 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.193432 B =10266.310663 C =10788.113997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.562 5.562 10 C 0.443 3.557 11 O -0.580 6.580 12 C 0.033 3.967 13 N -0.482 5.482 14 C 0.037 3.963 15 C -0.149 4.149 16 C 0.173 3.827 17 O -0.540 6.540 18 C -0.115 4.115 19 C -0.082 4.082 20 C -0.152 4.152 21 C 0.094 3.906 22 F -0.142 7.142 23 C -0.150 4.150 24 C -0.080 4.080 25 C 0.047 3.953 26 H 0.271 0.729 27 H 0.392 0.608 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.374 0.626 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.963 -20.753 5.979 21.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.198 5.198 10 C 0.228 3.772 11 O -0.465 6.465 12 C -0.099 4.099 13 N -0.206 5.206 14 C -0.090 4.090 15 C -0.188 4.188 16 C 0.131 3.869 17 O -0.346 6.346 18 C -0.115 4.115 19 C -0.100 4.100 20 C -0.171 4.171 21 C 0.074 3.926 22 F -0.120 7.120 23 C -0.169 4.169 24 C -0.098 4.098 25 C -0.081 4.081 26 H 0.081 0.919 27 H 0.226 0.774 28 H 0.110 0.890 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.137 0.863 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.221 0.779 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.111 0.889 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.426 -20.254 5.156 20.948 hybrid contribution -0.545 0.405 1.360 1.520 sum 0.881 -19.849 6.516 20.910 Atomic orbital electron populations 1.69620 1.05954 1.28107 1.50545 1.25271 0.95634 0.99757 0.97283 0.85802 0.79714 0.81118 0.77722 1.19198 1.20713 1.20771 1.19749 0.93391 0.82146 1.47511 0.87816 1.41858 1.09225 1.04578 1.64141 1.19667 0.88336 0.84595 0.84571 1.90450 1.13690 1.86761 1.55595 1.22113 0.94641 0.91343 1.01786 1.65291 1.13471 0.99736 1.42121 1.23338 0.98350 0.95736 0.91619 1.23216 0.98872 0.95760 1.00903 1.20653 0.93529 0.88705 0.84011 1.86637 1.53601 1.59572 1.34742 1.20607 1.00373 0.94677 0.95889 1.20894 0.97992 0.92317 0.98753 1.21142 1.01863 1.01111 0.93007 1.17766 0.99488 0.88129 0.87176 1.91497 1.85874 1.72078 1.62579 1.21153 1.02956 0.91569 1.01244 1.20888 0.96442 1.00314 0.92160 1.23177 0.93877 0.89747 1.01296 0.91887 0.77436 0.88962 0.93292 0.94550 0.86306 0.90940 0.89768 0.77899 0.84274 0.84679 0.84553 0.84818 0.88926 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.33 13.05 55.50 0.72 -23.60 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.21 9.68 -14.94 -0.14 -8.36 16 8 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 9 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 10 C 0.44 10.28 7.50 -10.99 -0.08 10.20 16 11 O -0.58 -15.17 13.24 5.54 0.07 -15.10 16 12 C 0.03 0.59 5.55 -4.98 -0.03 0.56 16 13 N -0.48 -8.12 5.33 -231.26 -1.23 -9.35 16 14 C 0.04 0.60 5.32 -2.09 -0.01 0.58 16 15 C -0.15 -1.82 6.10 -25.35 -0.15 -1.97 16 16 C 0.17 1.98 1.27 -90.39 -0.11 1.86 16 17 O -0.54 -6.00 11.87 -35.23 -0.42 -6.42 16 18 C -0.11 -1.14 4.76 -104.61 -0.50 -1.63 16 19 C -0.08 -0.70 9.25 -39.59 -0.37 -1.07 16 20 C -0.15 -1.31 10.03 -39.51 -0.40 -1.71 16 21 C 0.09 0.92 7.30 -39.42 -0.29 0.63 16 22 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 23 C -0.15 -1.41 10.03 -39.51 -0.40 -1.81 16 24 C -0.08 -0.78 8.02 -39.59 -0.32 -1.10 16 25 C 0.05 0.63 5.71 -2.18 -0.01 0.62 16 26 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 27 H 0.39 9.42 7.90 -40.82 -0.32 9.09 16 28 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 29 H 0.05 0.78 7.88 -51.93 -0.41 0.37 16 30 H 0.04 0.57 8.00 -51.93 -0.42 0.16 16 31 H 0.12 2.33 6.06 -51.93 -0.31 2.01 16 32 H 0.07 0.77 7.16 -51.93 -0.37 0.40 16 33 H 0.08 1.01 7.98 -51.93 -0.41 0.60 16 34 H 0.37 2.62 8.41 45.56 0.38 3.00 16 35 H 0.14 0.97 6.79 -52.48 -0.36 0.61 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.13 1.27 7.87 -52.49 -0.41 0.85 16 39 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 40 H 0.06 0.68 6.90 -51.93 -0.36 0.32 16 LS Contribution 335.68 15.07 5.06 5.06 Total: -1.00 -31.49 335.68 -7.93 -39.42 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -4.19 Total: 12.43 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -2.91 Total: -2.71 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.57 Total: -47.07 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.34 Total: -21.52 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.49 -7.93 -39.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777731354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.175 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds