Wall clock time and date at job start Fri Apr 10 2020 17:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86807 * 119.99693 * 2 1 4 4 H 1.48501 * 109.46873 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47010 * 300.00515 * 3 2 1 6 6 H 1.48504 * 109.46948 * 60.00694 * 3 2 1 7 7 C 1.38942 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00008 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00355 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00167 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00100 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00177 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47361 * 180.02562 * 12 10 9 14 14 C 1.48728 * 111.01444 * 54.49261 * 13 12 10 15 15 C 1.54378 * 104.51686 * 158.96396 * 14 13 12 16 16 C 1.54257 * 105.15061 * 336.27373 * 15 14 13 17 17 O 1.42895 * 110.33091 * 118.84632 * 16 15 14 18 18 C 1.50701 * 110.31963 * 240.94838 * 16 15 14 19 19 C 1.38249 * 119.97738 * 233.62268 * 18 16 15 20 20 C 1.38193 * 120.03015 * 179.76846 * 19 18 16 21 21 C 1.38466 * 119.97263 * 0.50643 * 20 19 18 22 22 F 1.35093 * 120.02834 * 179.76625 * 21 20 19 23 23 C 1.38457 * 119.94736 * 359.75123 * 21 20 19 24 24 C 1.38205 * 119.97779 * 359.97438 * 23 21 20 25 25 C 1.48562 * 111.00074 * 170.00081 * 13 12 10 26 26 H 0.96998 * 120.00272 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99568 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.47179 * 59.99956 * 12 10 9 29 29 H 1.09005 * 109.47280 * 300.00668 * 12 10 9 30 30 H 1.09002 * 110.38576 * 40.24145 * 14 13 12 31 31 H 1.08994 * 110.50376 * 277.75010 * 14 13 12 32 32 H 1.09001 * 110.32377 * 217.31656 * 15 14 13 33 33 H 1.09006 * 110.32329 * 95.21545 * 15 14 13 34 34 H 0.96696 * 113.99985 * 61.44385 * 17 16 15 35 35 H 1.08004 * 119.98345 * 0.02562 * 19 18 16 36 36 H 1.07993 * 120.01766 * 180.25323 * 20 19 18 37 37 H 1.08005 * 120.01632 * 179.97438 * 23 21 20 38 38 H 1.07995 * 119.98943 * 180.02562 * 24 23 21 39 39 H 1.08996 * 110.41335 * 82.18428 * 25 13 12 40 40 H 1.09002 * 110.40801 * 319.73732 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8892 2.3966 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 7 2.1986 -5.9794 -0.0027 14 6 3.1580 -5.8613 1.1276 15 6 3.7011 -7.2928 1.3254 16 6 2.6164 -8.2200 0.7397 17 8 3.1476 -8.9815 -0.3465 18 6 2.0800 -9.1378 1.8079 19 6 2.0709 -10.5050 1.6033 20 6 1.5837 -11.3479 2.5840 21 6 1.0948 -10.8220 3.7679 22 9 0.6139 -11.6446 4.7255 23 6 1.0994 -9.4522 3.9697 24 6 1.5924 -8.6115 2.9897 25 6 1.5064 -7.2718 0.2376 26 1 -0.4850 0.8400 0.0004 27 1 0.3535 -2.3906 -0.0005 28 1 0.6169 -4.9201 -0.8919 29 1 0.6175 -4.9213 0.8880 30 1 2.6449 -5.5216 2.0273 31 1 3.9685 -5.1793 0.8706 32 1 3.8444 -7.5002 2.3858 33 1 4.6395 -7.4197 0.7853 34 1 3.8794 -9.5628 -0.0985 35 1 2.4486 -10.9148 0.6781 36 1 1.5805 -12.4162 2.4256 37 1 0.7179 -9.0407 4.8925 38 1 1.5965 -7.5431 3.1471 39 1 1.0742 -7.6496 -0.6890 40 1 0.7344 -7.1539 0.9980 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777731354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:23 Heat of formation + Delta-G solvation = -113.237226 kcal Electronic energy + Delta-G solvation = -24925.221716 eV Core-core repulsion = 21039.587012 eV Total energy + Delta-G solvation = -3885.634703 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.92312 -41.47447 -40.20545 -38.79106 -36.88052 -35.86234 -33.39892 -32.97444 -31.98981 -31.17658 -29.33476 -27.78439 -25.98382 -24.08453 -23.48893 -22.61124 -21.34977 -20.95221 -19.85966 -19.05451 -18.23687 -17.71767 -17.37602 -16.92927 -16.64668 -16.60999 -16.24895 -15.78961 -15.64584 -15.56046 -15.11455 -14.84526 -14.53175 -14.48466 -14.16174 -14.00906 -13.54686 -13.39717 -13.34190 -13.12606 -13.00000 -12.69085 -12.44794 -12.37253 -12.17824 -12.11095 -12.00754 -11.79442 -11.49436 -11.09395 -10.21876 -10.10357 -10.01124 -9.62361 -9.33859 -8.47102 -5.95622 0.05211 0.23603 1.36200 1.41845 1.55844 2.03144 2.27864 2.49706 2.79111 3.14725 3.20046 3.26231 3.34066 3.55005 3.63089 3.79648 3.82098 3.94776 4.21960 4.25246 4.30400 4.36679 4.41240 4.51125 4.59131 4.70397 4.79729 4.81818 4.92490 4.95111 5.07870 5.13131 5.23198 5.25335 5.41379 5.47348 5.82440 5.85858 5.90640 6.07180 6.59889 6.85037 7.12542 7.54893 8.10507 8.70594 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.026605 B = 0.002727 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.193432 B =10266.310663 C =10788.113997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.330 4.330 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.441 3.559 11 O -0.613 6.613 12 C 0.044 3.956 13 N -0.503 5.503 14 C 0.037 3.963 15 C -0.139 4.139 16 C 0.185 3.815 17 O -0.552 6.552 18 C -0.118 4.118 19 C -0.076 4.076 20 C -0.150 4.150 21 C 0.080 3.920 22 F -0.149 7.149 23 C -0.154 4.154 24 C -0.086 4.086 25 C 0.046 3.954 26 H 0.277 0.723 27 H 0.396 0.604 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.392 0.608 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.134 0.866 39 H 0.093 0.907 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.555 -22.164 6.230 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.460 4.460 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.228 3.772 11 O -0.499 6.499 12 C -0.088 4.088 13 N -0.228 5.228 14 C -0.090 4.090 15 C -0.177 4.177 16 C 0.143 3.857 17 O -0.360 6.360 18 C -0.119 4.119 19 C -0.094 4.094 20 C -0.168 4.168 21 C 0.061 3.939 22 F -0.127 7.127 23 C -0.173 4.173 24 C -0.104 4.104 25 C -0.082 4.082 26 H 0.087 0.913 27 H 0.230 0.770 28 H 0.126 0.874 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.243 0.757 35 H 0.176 0.824 36 H 0.173 0.827 37 H 0.165 0.835 38 H 0.152 0.848 39 H 0.111 0.889 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.008 -21.695 5.411 22.382 hybrid contribution -0.395 0.760 1.273 1.535 sum 0.613 -20.934 6.684 21.984 Atomic orbital electron populations 1.69679 1.06838 1.29232 1.50435 1.26035 0.96530 1.02404 0.96324 0.84878 0.78058 0.77146 0.78301 1.19757 1.19702 1.19576 1.19687 0.92680 0.83890 1.49714 0.90241 1.41925 1.09322 1.04680 1.65049 1.20645 0.88270 0.85885 0.82383 1.90448 1.15512 1.87605 1.56378 1.21999 0.94394 0.88752 1.03618 1.65239 1.13986 1.00701 1.42875 1.23161 0.97166 0.97476 0.91246 1.23140 0.99017 0.93348 1.02224 1.20381 0.92439 0.88612 0.84279 1.86595 1.54598 1.59951 1.34863 1.20463 1.01082 0.94985 0.95411 1.21083 0.97286 0.91674 0.99369 1.21381 1.00887 1.02251 0.92308 1.18003 1.00011 0.88313 0.87596 1.91481 1.86058 1.72250 1.62943 1.21284 1.02820 0.91561 1.01650 1.20927 0.96736 1.00428 0.92335 1.23246 0.94736 0.88276 1.01913 0.91311 0.77020 0.87353 0.90954 0.94680 0.90461 0.89114 0.89746 0.75738 0.82388 0.82684 0.83538 0.84828 0.88906 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.60 13.05 21.66 0.28 -49.31 16 2 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 3 Si 0.99 42.83 29.55 68.60 2.03 44.86 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.33 -18.67 9.68 84.04 0.81 -17.85 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.57 -29.32 5.29 -306.98 -1.62 -30.94 16 10 C 0.44 20.91 7.50 87.66 0.66 21.57 16 11 O -0.61 -33.31 13.24 -3.08 -0.04 -33.35 16 12 C 0.04 1.54 5.55 85.56 0.47 2.01 16 13 N -0.50 -16.66 5.33 -885.58 -4.72 -21.38 16 14 C 0.04 1.21 5.32 86.42 0.46 1.67 16 15 C -0.14 -3.22 6.10 31.49 0.19 -3.03 16 16 C 0.18 3.83 1.27 -10.65 -0.01 3.82 16 17 O -0.55 -10.86 11.87 -148.98 -1.77 -12.63 16 18 C -0.12 -2.05 4.76 -19.86 -0.09 -2.14 16 19 C -0.08 -1.08 9.25 22.26 0.21 -0.87 16 20 C -0.15 -2.15 10.03 22.31 0.22 -1.93 16 21 C 0.08 1.40 7.30 22.38 0.16 1.56 16 22 F -0.15 -2.89 17.27 44.97 0.78 -2.11 16 23 C -0.15 -2.61 10.03 22.31 0.22 -2.39 16 24 C -0.09 -1.51 8.02 22.26 0.18 -1.33 16 25 C 0.05 1.14 5.71 86.45 0.49 1.64 16 26 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 27 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 28 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 29 H 0.07 2.21 7.88 -2.38 -0.02 2.19 16 30 H 0.03 1.11 8.00 -2.39 -0.02 1.10 16 31 H 0.08 3.17 6.06 -2.39 -0.01 3.16 16 32 H 0.09 1.76 7.16 -2.39 -0.02 1.75 16 33 H 0.08 1.95 7.98 -2.38 -0.02 1.93 16 34 H 0.39 4.35 8.41 -74.06 -0.62 3.72 16 35 H 0.16 1.60 6.79 -2.91 -0.02 1.58 16 36 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 37 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 38 H 0.13 2.31 7.87 -2.91 -0.02 2.28 16 39 H 0.09 2.33 8.08 -2.39 -0.02 2.31 16 40 H 0.07 1.54 6.90 -2.39 -0.02 1.52 16 Total: -1.00 -68.63 335.68 -0.88 -69.52 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: -0.26 Total: 32.88 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 4.45 Total: 2.48 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -6.06 Total: -101.64 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -1.81 Total: -45.98 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.78 Total: -2.11 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -68.63 -0.88 -69.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777731354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.721 kcal (2) G-P(sol) polarization free energy of solvation -68.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds