Wall clock time and date at job start Fri Apr 10 2020 17:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.53002 * 109.47408 * 164.99913 * 18 17 14 20 20 C 1.53002 * 109.62881 * 180.30302 * 19 18 17 21 21 O 1.43751 * 109.63294 * 60.06291 * 19 18 17 22 22 C 1.44781 * 104.81591 * 215.81019 * 21 19 18 23 23 C 1.54913 * 101.72348 * 36.10369 * 22 21 19 24 24 O 1.43368 * 109.62964 * 300.69852 * 19 18 17 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 30 30 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 31 31 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 32 32 H 0.97000 * 120.00897 * 245.00185 * 17 14 12 33 33 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 34 34 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 35 35 H 1.09006 * 109.46489 * 60.00397 * 20 19 18 36 36 H 1.08997 * 109.46828 * 179.97438 * 20 19 18 37 37 H 1.08994 * 109.47459 * 300.00147 * 20 19 18 38 38 H 1.09002 * 110.97679 * 277.99271 * 22 21 19 39 39 H 1.09003 * 111.01021 * 154.22517 * 22 21 19 40 40 H 1.08994 * 110.69453 * 206.04667 * 23 22 21 41 41 H 1.08995 * 110.69433 * 82.83324 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6085 0.8078 5.4378 20 6 -0.2316 -0.0723 6.3654 21 8 -0.2058 1.8726 4.9187 22 6 0.0462 2.9942 5.7988 23 6 1.5505 2.8104 6.1200 24 8 1.7002 1.3772 6.1722 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.7088 1.1611 -3.4845 29 1 2.4158 -2.7376 0.9718 30 1 1.6238 -2.2851 2.5003 31 1 0.6905 -2.3002 0.9847 32 1 1.9052 1.7752 3.4681 33 1 0.3187 -0.4565 3.7178 34 1 1.7669 -0.8422 4.6782 35 1 0.3880 -0.8761 6.7631 36 1 -0.6163 0.5305 7.1881 37 1 -1.0646 -0.4983 5.8062 38 1 -0.5575 2.9236 6.7036 39 1 -0.1308 3.9401 5.2869 40 1 1.7964 3.2587 7.0826 41 1 2.1680 3.2336 5.3277 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800925504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:49 Heat of formation + Delta-G solvation = -159.351269 kcal Electronic energy + Delta-G solvation = -25515.339642 eV Core-core repulsion = 21750.776446 eV Total energy + Delta-G solvation = -3764.563196 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.128 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.80901 -36.62547 -36.13497 -35.19794 -35.16670 -35.00807 -32.54376 -31.83258 -29.05650 -28.73348 -25.84849 -25.51279 -25.08194 -23.48328 -21.48072 -20.71981 -18.75569 -17.71444 -17.24557 -17.07907 -16.71327 -16.23774 -15.75323 -15.56328 -15.07255 -14.47649 -14.19248 -13.92644 -13.56055 -13.39968 -13.16913 -13.06331 -12.89633 -12.71835 -12.52209 -12.39562 -11.97542 -11.70578 -11.60109 -11.48210 -11.40488 -11.29978 -11.19713 -10.93146 -10.76543 -10.45523 -10.40210 -10.24071 -9.98624 -9.89327 -9.27589 -9.18087 -8.41799 -7.93740 -6.03616 -4.10042 1.25814 3.15285 3.32892 3.36960 3.40307 3.52508 3.66837 4.17252 4.31242 4.43462 4.48100 4.62265 4.80394 4.90372 5.08318 5.11350 5.27656 5.30391 5.36777 5.39008 5.48251 5.58065 5.61874 5.68519 5.80042 6.05260 6.15979 6.39634 6.66214 6.83005 6.84047 6.87940 7.06790 7.19060 7.53331 7.67777 7.83280 8.08560 8.31870 8.91898 9.55425 11.02044 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.023961 B = 0.004318 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.275892 B = 6482.212892 C = 6720.282241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.269 3.731 3 H 0.059 0.941 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.990 5.990 13 C 0.109 3.891 14 S 2.781 3.219 15 O -0.996 6.996 16 O -0.974 6.974 17 N -1.124 6.124 18 C 0.122 3.878 19 C 0.249 3.751 20 C -0.170 4.170 21 O -0.362 6.362 22 C 0.014 3.986 23 C 0.017 3.983 24 O -0.370 6.370 25 H 0.092 0.908 26 H 0.033 0.967 27 H 0.012 0.988 28 H 0.263 0.737 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.411 0.589 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.913 1.766 18.139 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.833 5.833 13 C -0.038 4.038 14 S 2.790 3.210 15 O -0.979 6.979 16 O -0.958 6.958 17 N -0.883 5.883 18 C -0.005 4.005 19 C 0.171 3.829 20 C -0.228 4.228 21 O -0.282 6.282 22 C -0.063 4.063 23 C -0.060 4.060 24 O -0.291 6.291 25 H 0.111 0.889 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.244 0.756 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.129 0.871 40 H 0.118 0.882 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.003 1.589 17.898 18.409 hybrid contribution -0.270 0.125 -0.763 0.819 sum -4.272 1.714 17.135 17.743 Atomic orbital electron populations 1.22112 0.98253 0.99644 1.00715 1.18721 0.91295 0.92977 0.80429 0.92381 1.21305 1.31561 1.12979 0.90073 0.92020 1.24908 0.94986 0.95020 0.98974 1.69856 1.36548 1.22731 1.23816 0.86554 0.79344 0.79558 0.81908 1.21254 1.20178 1.20262 1.57698 1.70029 1.19746 1.35812 1.21165 1.01782 0.82222 0.98626 1.01911 0.73603 0.73175 0.72351 1.93534 1.69073 1.60759 1.74524 1.93609 1.74331 1.56019 1.71863 1.55991 1.62274 1.17273 1.52746 1.21556 0.95730 0.93060 0.90198 1.23586 0.81661 0.88390 0.89267 1.22343 1.00471 1.00320 0.99706 1.89343 1.65400 1.21624 1.51855 1.24404 0.95026 0.91681 0.95157 1.24252 0.96280 0.82029 1.03410 1.88942 1.47649 1.18483 1.74060 0.88941 0.94833 0.96874 0.92694 0.93226 0.93468 0.90930 0.75629 0.90019 0.88837 0.90260 0.91504 0.90062 0.90688 0.87134 0.88201 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.95 37.16 0.33 -3.05 16 2 C 0.27 6.66 2.62 -69.09 -0.18 6.48 16 3 H 0.06 1.60 6.91 -51.92 -0.36 1.24 16 4 C -0.52 -14.16 8.37 -34.44 -0.29 -14.44 16 5 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.99 -20.83 3.12 -115.86 -0.36 -21.20 16 13 C 0.11 1.94 9.53 59.85 0.57 2.51 16 14 S 2.78 56.27 6.09 -107.50 -0.66 55.62 16 15 O -1.00 -21.22 16.68 -57.17 -0.95 -22.18 16 16 O -0.97 -23.32 16.70 -57.17 -0.95 -24.28 16 17 N -1.12 -18.00 5.86 -10.61 -0.06 -18.06 16 18 C 0.12 1.65 5.66 -4.04 -0.02 1.62 16 19 C 0.25 2.93 1.05 -26.73 -0.03 2.90 16 20 C -0.17 -1.53 9.19 37.16 0.34 -1.19 16 21 O -0.36 -4.35 10.59 -59.04 -0.63 -4.98 16 22 C 0.01 0.12 7.91 38.17 0.30 0.42 16 23 C 0.02 0.15 7.94 38.17 0.30 0.45 16 24 O -0.37 -4.50 10.72 -59.04 -0.63 -5.14 16 25 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 26 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.69 7.79 -51.93 -0.40 0.29 16 31 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 32 H 0.41 6.18 8.13 -34.47 -0.28 5.90 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.22 7.75 -51.93 -0.40 0.82 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.71 8.06 -51.93 -0.42 0.29 16 LS Contribution 345.50 15.07 5.21 5.21 Total: -1.00 -33.95 345.50 -8.40 -42.35 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.20 Total: 3.40 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 1.23 Total: -2.66 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: 0.20 Total: -63.65 kcal Atomic # 8 Polarization: -53.40 SS G_CDS: -3.17 Total: -56.57 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 56.27 SS G_CDS: -0.66 Total: 55.62 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.95 -8.40 -42.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800925504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.003 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds