Wall clock time and date at job start Fri Apr 10 2020 17:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.53002 * 109.47408 * 164.99913 * 18 17 14 20 20 C 1.53002 * 109.62881 * 180.30302 * 19 18 17 21 21 O 1.43751 * 109.63294 * 60.06291 * 19 18 17 22 22 C 1.44781 * 104.81591 * 215.81019 * 21 19 18 23 23 C 1.54913 * 101.72348 * 36.10369 * 22 21 19 24 24 O 1.43368 * 109.62964 * 300.69852 * 19 18 17 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 30 30 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 31 31 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 32 32 H 0.97000 * 120.00897 * 245.00185 * 17 14 12 33 33 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 34 34 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 35 35 H 1.09006 * 109.46489 * 60.00397 * 20 19 18 36 36 H 1.08997 * 109.46828 * 179.97438 * 20 19 18 37 37 H 1.08994 * 109.47459 * 300.00147 * 20 19 18 38 38 H 1.09002 * 110.97679 * 277.99271 * 22 21 19 39 39 H 1.09003 * 111.01021 * 154.22517 * 22 21 19 40 40 H 1.08994 * 110.69453 * 206.04667 * 23 22 21 41 41 H 1.08995 * 110.69433 * 82.83324 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6085 0.8078 5.4378 20 6 -0.2316 -0.0723 6.3654 21 8 -0.2058 1.8726 4.9187 22 6 0.0462 2.9942 5.7988 23 6 1.5505 2.8104 6.1200 24 8 1.7002 1.3772 6.1722 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.7088 1.1611 -3.4845 29 1 2.4158 -2.7376 0.9718 30 1 1.6238 -2.2851 2.5003 31 1 0.6905 -2.3002 0.9847 32 1 1.9052 1.7752 3.4681 33 1 0.3187 -0.4565 3.7178 34 1 1.7669 -0.8422 4.6782 35 1 0.3880 -0.8761 6.7631 36 1 -0.6163 0.5305 7.1881 37 1 -1.0646 -0.4983 5.8062 38 1 -0.5575 2.9236 6.7036 39 1 -0.1308 3.9401 5.2869 40 1 1.7964 3.2587 7.0826 41 1 2.1680 3.2336 5.3277 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800925504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:48 Heat of formation + Delta-G solvation = -186.357239 kcal Electronic energy + Delta-G solvation = -25516.510709 eV Core-core repulsion = 21750.776446 eV Total energy + Delta-G solvation = -3765.734263 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.128 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.61160 -38.35222 -37.90355 -36.90793 -36.17807 -36.00710 -34.51995 -32.70782 -30.90925 -29.43580 -27.28256 -27.06614 -26.73252 -24.17053 -22.65814 -22.28169 -20.29587 -18.92411 -18.64139 -18.48358 -18.12165 -17.72004 -17.09379 -16.70222 -16.43894 -16.03671 -15.24706 -15.11672 -14.88009 -14.82201 -14.52212 -14.29287 -13.93897 -13.75158 -13.73474 -13.43474 -13.39774 -13.18639 -13.14415 -13.10405 -12.98606 -12.78665 -12.76787 -12.58838 -12.26769 -12.21803 -12.14270 -11.88290 -11.15488 -11.11750 -10.82233 -10.50773 -10.42458 -9.67171 -8.10618 -6.24345 -0.34852 1.43696 1.45828 1.52842 2.01492 2.42411 2.43990 2.59446 2.86808 3.17533 3.40220 3.60341 3.73348 3.93917 4.05781 4.11799 4.20631 4.34182 4.46131 4.58371 4.65603 4.68822 4.77978 4.80251 4.84213 4.87380 4.99241 5.01807 5.05365 5.16091 5.20015 5.22387 5.62095 5.69685 5.87926 5.98500 6.10069 6.17272 6.31237 6.82922 7.44469 8.93460 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.023961 B = 0.004318 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.275892 B = 6482.212892 C = 6720.282241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.273 3.727 3 H 0.022 0.978 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.956 3.044 9 H -0.281 1.281 10 H -0.280 1.280 11 H -0.266 1.266 12 N -0.996 5.996 13 C 0.101 3.899 14 S 2.798 3.202 15 O -1.007 7.007 16 O -1.018 7.018 17 N -1.112 6.112 18 C 0.109 3.891 19 C 0.247 3.753 20 C -0.166 4.166 21 O -0.385 6.385 22 C 0.012 3.988 23 C 0.008 3.992 24 O -0.390 6.390 25 H 0.066 0.934 26 H 0.045 0.955 27 H 0.033 0.967 28 H 0.264 0.736 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.416 0.584 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.911 1.087 19.454 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.040 0.960 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.782 3.218 9 H -0.207 1.207 10 H -0.206 1.206 11 H -0.190 1.190 12 N -0.838 5.838 13 C -0.045 4.045 14 S 2.807 3.193 15 O -0.990 6.990 16 O -1.002 7.002 17 N -0.874 5.874 18 C -0.018 4.018 19 C 0.169 3.831 20 C -0.224 4.224 21 O -0.306 6.306 22 C -0.064 4.064 23 C -0.068 4.068 24 O -0.312 6.312 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.250 0.750 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.003 0.896 19.228 19.888 hybrid contribution 0.052 0.384 -1.073 1.141 sum -4.951 1.280 18.155 18.861 Atomic orbital electron populations 1.21895 0.96729 1.00285 1.00400 1.18398 0.92308 0.91245 0.81147 0.95977 1.21623 1.31724 1.13073 0.91464 0.92529 1.25646 0.95193 0.95715 1.01666 1.69976 1.37242 1.23695 1.24398 0.85645 0.78404 0.79066 0.78707 1.20666 1.20555 1.19036 1.57562 1.69969 1.21087 1.35151 1.21399 1.01887 0.80253 1.00934 1.01186 0.73566 0.72339 0.72233 1.93511 1.69756 1.61182 1.74572 1.93544 1.75884 1.57473 1.73289 1.55573 1.62110 1.17734 1.52006 1.21920 0.95777 0.93362 0.90738 1.23659 0.81921 0.88627 0.88887 1.22329 1.00325 1.00168 0.99533 1.89310 1.65413 1.22676 1.53185 1.24641 0.94752 0.91253 0.95735 1.24478 0.96803 0.80772 1.04711 1.88921 1.48209 1.20086 1.73964 0.91552 0.93605 0.94784 0.92636 0.93932 0.90098 0.90114 0.74984 0.88924 0.88430 0.89609 0.90295 0.89265 0.88564 0.85747 0.85562 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.06 8.95 71.98 0.64 -5.42 16 2 C 0.27 13.69 2.62 44.24 0.12 13.80 16 3 H 0.02 1.27 6.91 -2.38 -0.02 1.26 16 4 C -0.54 -29.61 8.37 25.60 0.21 -29.40 16 5 H 0.06 3.08 7.65 -2.91 -0.02 3.06 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.91 -51.88 11.32 21.45 0.24 -51.64 16 8 Si 0.96 43.68 29.54 68.60 2.03 45.70 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 12 N -1.00 -41.57 3.12 -520.46 -1.62 -43.19 16 13 C 0.10 3.45 9.53 127.77 1.22 4.67 16 14 S 2.80 113.26 6.09 -56.49 -0.34 112.91 16 15 O -1.01 -42.33 16.68 -128.00 -2.14 -44.47 16 16 O -1.02 -50.04 16.70 -128.00 -2.14 -52.18 16 17 N -1.11 -34.86 5.86 -187.47 -1.10 -35.96 16 18 C 0.11 2.74 5.66 86.38 0.49 3.23 16 19 C 0.25 5.33 1.05 30.60 0.03 5.36 16 20 C -0.17 -2.54 9.19 71.98 0.66 -1.88 16 21 O -0.38 -8.53 10.59 -126.22 -1.34 -9.87 16 22 C 0.01 0.17 7.91 72.64 0.57 0.75 16 23 C 0.01 0.13 7.94 72.64 0.58 0.71 16 24 O -0.39 -8.83 10.72 -126.22 -1.35 -10.18 16 25 H 0.07 3.39 6.07 -2.39 -0.01 3.37 16 26 H 0.04 1.92 6.66 -2.39 -0.02 1.90 16 27 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 2.20 7.79 -2.38 -0.02 2.18 16 31 H 0.08 2.62 6.43 -2.39 -0.02 2.60 16 32 H 0.42 12.40 8.13 -96.74 -0.79 11.61 16 33 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.10 2.37 7.75 -2.38 -0.02 2.35 16 35 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 39 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 1.23 8.06 -2.39 -0.02 1.21 16 Total: -1.00 -72.91 345.50 -2.54 -75.44 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.25 Total: 20.19 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 4.97 Total: -6.76 kcal Atomic # 7 Polarization: -128.31 SS G_CDS: -2.48 Total: -130.79 kcal Atomic # 8 Polarization: -109.74 SS G_CDS: -6.96 Total: -116.70 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 113.26 SS G_CDS: -0.34 Total: 112.91 kcal Total: -72.91 -2.54 -75.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800925504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.915 kcal (2) G-P(sol) polarization free energy of solvation -72.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds